Application of MS-Based Metabolomic Approaches in Analysis of Starfish and Sea Cucumber Bioactive Compounds

Today, marine natural products are considered one of the main sources of compounds for drug development. Starfish and sea cucumbers are potential sources of natural products of pharmaceutical interest. Among their metabolites, polar steroids, triterpene glycosides, and polar lipids have attracted a great deal of attention; however, studying these compounds by conventional methods is challenging. The application of modern MS-based approaches can help to obtain valuable information about such compounds. This review provides an up-to-date overview of MS-based applications for starfish and sea cucumber bioactive compounds analysis. While describing most characteristic features of MS-based approaches in the context of starfish and sea cucumber metabolites, including sample preparation and MS analysis steps, the present paper mainly focuses on the application of MS-based metabolic profiling of polar steroid compounds, triterpene glycosides, and lipids. The application of MS in metabolomics studies is also outlined.     

Local variability of stand structural features in beech dominated natural forests of Central Europe: Implications for sampling

Current knowledge of the within-site variability of major stand structural features in beech dominated natural forests is limited. Numerous studies have used just several small plots for characterizations of natural stands, but this may lead to generalizations based on unreliable results. This study shows how major stand structural features vary at the local scale, and how suitable sampling may reflect this variability. Stem position maps of three natural forests in the Czech Republic (Zofin 71 ha, Salajka 19 ha and Zakova hora 17 ha) were used. Each vector stem position map representing all live and dead trees with DBH ≥ 10 cm was intensively analyzed using square sample plots of different sizes (10 × 10 m; 20 × 20 m; 30 × 30 m; 50 × 50 m; 100 × 100 m; 140 × 140 m and 200 × 200 m). Basic statistics (mean, standard deviation, coefficient of variation, min., and max.) were calculated for every plot size and each of six major stand features: density, basal area and volume of living trees, volume of course woody debris, total volume and proportion of course woody debris in total volume.     

Phytochemical and antimicrobial characterization of Macleaya cordata herb

Macleaya cordata (plume poppy) is a source of bioactive compounds, mainly isoquinoline alkaloids which are used in phytopreparations with anti-inflammatory and antimicrobial activities. In this study, the alkaloids sanguinarine, chelerythrine, their dihydro derivatives, protopine and allocryptopine and phenolics, gallic, protocatechuic, p-hydroxybenzoic, m-hydroxybenzoic, gentisic, p-coumaric, caffeic, ferulic and sinapic acids were determined in extracts prepared from M. cordata aerial part, seeds, and seed capsules using HPLC with UV detection and/or LC/MS with electrospray ionization. The highest content of sanguinarine and chelerythrine was found in capsules. Protopine and allocryptopine were major alkaloids in leaves including footstalks. The seed oil contained dihydrosanguinarine, dihydrochelerythrine and twelve fatty acids of which linoleic, oleic, palmitic and stearic acids predominated. In addition, sanguinarine reductase, a key enzyme in sanguinarine/dihydrosanguinarine equilibrium in plants, was found for the first time, in the soluble proteins of leaves. Finally, extracts were tested for antimicrobial activity using the microdilution method on standard reference bacterial strains.     

Frequency of a mutant allele of cytochrome b conferring resistance to Ool fungicides in the Czech population of Ramularia collo-cygni

Journal of Plant Diseases and Protection - Ramularia collo-cygni (RCC) is a fungal pathogen infecting both spring and winter barley and causing Ramularia leaf spot (RLS). Fungicides based on...     

Dynamics of windthrow events in a natural fir-beech forest in the Carpathian mountains

The age of single windthrows (single uprooted trees and/or pit/mound microtopographical pairs) in a natural fir-beech forest was assessed in the flysch zone of the Outer Western Carpathians. The following characteristics were evaluated for all 1562 single windthrows occurring in a 10.8 ha area: dimensions; thickness of organic and upper mineral soil horizons both on mounds and in pits; and the presence of new trees taking root on the windthrows. For more recent windthrows, selected quantitative and qualitative characteristics of the uprooted trees were evaluated. A suppositional gradient of age (SGA) was constructed based on the windthrow characteristics using principal component analysis. A representative sample of windthrows was dated along the SGA with the use of dendroecological techniques and historic records from 1972 and 1995. For European beech (Fagus sylvatica L.) we were able to measure the actual threshold of release value – at 12% of growth change. The age of windthrows was determined in 37 of a total of 51 cases. The development of windthrow properties over time was studied. Age explained 33.7% of the variability in the measured windthrow characteristics (F = 19.31, p = 0.0002, measured characteristics see above). A multiple regression model (R² = 0.844, F = 65.62, p < 1 × 10⁻⁶) was constructed to evaluate the age of undated windthrows. The best predictors of age were: ordinal classification of trunk disintegration and thickness of F and A horizons on the mound.     

Phytoextraction of Pb and Cd from a contaminated agricultural soil using different EDTA application regimes: Laboratory versus field scale measures of efficiency

Enhanced phytoextraction of heavy metals using chelating agents and agricultural crops is widely discussed as a remediation technique for agricultural soils contaminated with low mobile heavy metals. In this study, phytoextraction efficiency of Zea mays after single and split applications of EDTA was tested on the laboratory and the field scale. EDTA effectively increased the mobility of target heavy metals (Pb and Cd) in the soil solution. Split applications provided generally lower water-soluble levels of Pb and Cd both in the pot and the field experiment. Therefore, the risk of groundwater contamination may be reduced after split applications. Higher Pb and Cd mobilisation after single applications increased plant stress, phytotoxicity and reduced plant dry above-ground biomass production compared to corresponding split doses. Single doses enhanced plant uptake of Pb and Cd and the phytoremediation efficiency compared to corresponding split doses. Results of plant dry above-ground biomass and heavy metal uptake obtained from the pot experiment could be to some extent verified in the field experiment. Plant uptake of Pb and Cd was lower and biomass production dropped after EDTA additions in the field experiment. Remediation factors in the field experiment were in general significantly lower than in the pot experiment mainly due to the much higher mass of soil per plant under field conditions. This highlights the limitations when going from the lab to the field scale. The low phytoremediation efficiency in the field and the mobilisation of high amounts of Pb and Cd down the soil profile may make the use of EDTA and Z. mays not suitable for the remediation of severely heavy metal contaminated soils in a reasonable time frame and may result in substantial groundwater pollution under used crop management.     

Are species genetically more sensitive to habitat fragmentation on the periphery of their range compared to the core? A case study on the sand lizard (<Emphasis Type="Italic">Lacerta agilis</Emphasis>)

Context

Species show different sensitivity to habitat loss and fragmentation depending on their specialization. Populations of a species at the range margin are generally assumed to be more stenoecious than populations at the core of the distribution and should therefore be more sensitive to habitat fragmentation.

Objectives

We evaluated the hypothesis that fragmentation effects species more strongly at the range periphery of their range compared to the core, resulting in lower genetic variability in comparable patch sizes and lower gene flow among populations.

Methods

We compared the genetic diversity and structure of five sand lizard (Lacerta agilis) populations at the margin of its range in Bulgaria and of 11 populations at the core of its distribution in Germany. We based the analysis on microsatellites, comprising 15 loci in Bulgaria and 12 in Germany.

Results

All diversity indices declined with patch size. For medium-sized patches all diversity indices were lower at the range periphery compared to the core, with two of them being significant. AIC_c based model selection showed strong support for core/periphery and patch size effects for observed and expected heterozygosity but only a patch size effect for allelic richness. There was no isolation-by-distance and each sampled population was allocated to a separate cluster with high probability for both countries, indicating that all populations are (almost) completely isolated.

Conclusion

Our study indicates an increased sensitivity of a species to fragmentation at the periphery compared to the core of its distribution. This differential sensitivity should be accounted for when prioritizing species based on their fragmentation sensitivity in landscape management.

     

Deep-Sea Anemones Are Prospective Source of New Antimicrobial and Cytotoxic Compounds

The peculiarities of the survival and adaptation of deep-sea organisms raise interest in the study of their metabolites as promising drugs. In this work, the hemolytic, cytotoxic, antimicrobial, and enzyme-inhibitory activities of tentacle extracts from five species of sea anemones (Cnidaria, orders Actiniaria and Corallimorpharia) collected near the Kuril and Commander Islands of the Far East of Russia were evaluated for the first time. The extracts of Liponema brevicorne and Actinostola callosa demonstrated maximal hemolytic activity, while high cytotoxic activity against murine splenocytes and Ehrlich carcinoma cells was found in the extract of Actinostola faeculenta. The extracts of Corallimorphus cf. pilatus demonstrated the greatest activity against Ehrlich carcinoma cells but were not toxic to mouse spleen cells. Sea anemones C. cf. pilatus and Stomphia coccinea are promising sources of antimicrobial and antifungal compounds, being active against Gram-positive bacteria Bacillus subtilis, Staphylococcus aureus, and yeast Candida albicans. Moreover, all sea anemones contain α-galactosidase inhibitors. Peptide mass fingerprinting of L. brevicorne and C. cf. pilatus extracts provided a wide range of peptides, predominantly with molecular masses of 4000–5900 Da, which may belong to a known or new structural class of toxins. The obtained data allow concluding that deep-sea anemones are a promising source of compounds for drug discovery.     

Antiviral Potential of Sea Urchin Aminated Spinochromes against Herpes Simplex Virus Type 1

Herpes simplex virus type 1 (HSV-1) is one of the most prevalent pathogens worldwide requiring the search for new candidates for the creation of antiherpetic drugs. The ability of sea urchin spinochromes—echinochrome A (EchA) and its aminated analogues, echinamines A (EamA) and B (EamB)—to inhibit different stages of HSV-1 infection in Vero cells and to reduce the virus-induced production of reactive oxygen species (ROS) was studied. We found that spinochromes exhibited maximum antiviral activity when HSV-1 was pretreated with these compounds, which indicated the direct effect of spinochromes on HSV-1 particles. EamB and EamA both showed the highest virucidal activity by inhibiting the HSV-1 plaque formation, with a selectivity index (SI) of 80.6 and 50.3, respectively, and a reduction in HSV-1 attachment to cells (SI of 8.5 and 5.8, respectively). EamA and EamB considerably suppressed the early induction of ROS due to the virus infection. The ability of the tested compounds to directly bind to the surface glycoprotein, gD, of HSV-1 was established in silico. The dock score of EchA, EamA, and EamB was −4.75, −5.09, and −5.19 kcal/mol, respectively, which correlated with the SI of the virucidal action of these compounds and explained their ability to suppress the attachment and penetration of the virus into the cells.