Nitrogen and fine root length dynamics in a tropical agroforestry system with periodically pruned Erythrina poeppigiana

The effect of pruning all branches (complete pruning) or retaining one branch (partial pruning) on the dynamics of nitrogen cycling in aboveground biomass, nitrogen supplying power of an amended Eutric Cambisol, and fine root length, was studied in an Erythrina poeppigiana (Walp.) O.F. Cook—tomato (Lycopersicon esculentum Mill.) alley cropping practice in Turrialba, Costa Rica during 1999–2000. Over the 1 year pruning cycle, in which trees were completely or partially pruned four times, respective aboveground biomass production was 4.4 Mg or 7 Mg ha⁻¹ (2-year-old trees) and 5.5 Mg or 9 Mg ha⁻¹ (8-year-old trees); N cycled in aboveground biomass was 123 kg or 187 kg ha⁻¹ (2-year-old trees) and 160 kg or 256 kg N ha⁻¹ (8-year-old trees); mean fine root length was 489 or 821 m (2-year-old-trees), 184 or 364 m per tree (8-year-old-trees). Pruning intensity did not significantly affect net N mineralisation and net nitrification rates during the tomato-cropping season. For the tomato crop, pre-plant mean net N mineralisation rate of 2.5 mg N kg⁻¹ soil day⁻¹ was significantly lower than 16.7 or 11.6 mg N kg⁻¹ soil day⁻¹ at the end of vegetative development and flowering, respectively. Mean net nitrification rates of 3.5, and 4.3 mg N kg⁻¹ soil day⁻¹, at pre-plant and end of vegetative development, respectively, were significantly higher than 0.3 mg N kg⁻¹ soil day⁻¹ at end of flowering. In humid tropical low-input agroforestry practices that depend on organic inputs from trees for crop nutrition, retention of a branch on the pruned tree stump appears to be a good alternative to removal of all branches for reducing N losses through higher N cycling in aboveground biomass, and for conserving fine root length for higher N uptake, although it might enhance competition for associated crops.     

Methane emissions from upland forest soils and vegetation

Most work on methane (CH(4)) emissions from natural ecosystems has focused on wetlands because they are hotspots of CH(4) production. Less attention has been directed toward upland ecosystems that cover far larger areas, but are assumed to be too dry to emit CH(4). Here we review CH(4) production and emissions in upland ecosystems, with attention to the influence of plant physiology on these processes in forests. Upland ecosystems are normally net sinks for atmospheric CH(4) because rates of CH(4) consumption exceed CH(4) production. Production of CH(4) in upland soils occurs in microsites and may be common in upland forest soils. Some forests switch from being CH(4) sinks to CH(4) sources depending on soil water content. Plant physiology influences CH(4) cycling by modifying the availability of electron donors and acceptors in forest soils. Plants are the ultimate source of organic carbon (electron donor) that microbes process into CH(4). The availability of O(2) (electron acceptor) is sensitive to changes in soil water content, and therefore, to transpiration rates. Recently, abiotic production of CH(4) from aerobic plant tissue was proposed, but has not yet been verified with independent data. If confirmed, this new source is likely to be a minor term in the global CH(4) budget, but important to quantify for purposes of greenhouse gas accounting. A variety of observations suggest that our understanding of CH(4) sources in upland systems is incomplete, particularly in tropical forests which are stronger sources then expected.     

Distance to edges, edge contrast and landscape fragmentation: Interactions affecting farmland birds around forest plantations

Afforestation often causes direct habitat losses for farmland birds of conservation concern, but it is uncertain whether negative effects also extend significantly into adjacent open land. Information is thus required on how these species react to wooded edges, and how their responses are affected by edge and landscape characteristics. These issues were examined in Mediterranean arable farmland, using bird counts at 0, 100, 200, 300 and >300 m from oak, pine and eucalyptus edges, embedded in landscapes with variable amounts and spatial configurations of forest plantations. Bird diversity declined away from edges, including that of woodland, farmland and ground-nesting birds. Positive edge responses were also found for overall and woodland bird abundances, and for five of the nine most widespread and abundant species (Galerida larks, stonechat, linnet, goldfinch and corn bunting). Strong negative edge effects were only recorded for steppe birds, with reduced abundances near edges of calandra larks and short-toed larks, but not of little bustards and tawny pipits. Edge contrast affected the magnitude of edge effects, with a tendency for stronger responses to old and tall eucalyptus plantations (hard edges) than to young and short oak plantations (soft edges). There were also species-specific interactions between edge and fragmentation effects, with positive edge responses tending to be strongest in less fragmented landscapes, whereas steppe birds tended to increase faster away from edges and to reach the highest species richness and abundances in large arable patches. Results suggest that forest plantations may increase overall bird diversity and abundance in adjacent farmland, at the expenses of steppe birds of conservation concern. Clustering forest plantations in a few large patches and thus reducing the density of wooded edges at the landscape-scale might reduce such negative impacts.     

The effects of pH,redox, and salinity on metal release from a contaminated sediment

Levels of total Hg were determined in the muscle tissue of Helicolenus dactylopterus (mean=0.29 ug.g⁻¹ ±0.025 S.E.; range=0.041.10 ug.g⁻¹) and Pontinus kuhlii (mean=0.16 ug.g⁻¹ ±0.092 S.E.; range=0.05-0.50 ug.g⁻¹) caught in the Azores between August 1989 and May 1990. Mercury concentrations were related to sex, length, weight, age, growth and condition of both fish species. There were highly significant positive correlations between Hg levels and these variables. In P. kuhlii a significant sex-related difference in Hg levels was found; the rate of Hg accumulation is significantly faster in females than in males and mean Hg levels were higher in females. Relationships describing Hg vs size and age dependence were determined for both species and sexes and patterns and rates of Hg accumulation were discussed in relation to a number of biological and ecological factors with influence on it. A comparison of Hg content of Azorean and Mediterranean populations of H. dactylopterus was conducted and its suitability as an indicator in pollutant monitoring of benthic compartment of marine ecosystems is discussed.     

Molecular mimicry regulates ABA signaling by SnRK2 kinases and PP2C phosphatases

Abscisic acid (ABA) is an essential hormone for plants to survive environmental stresses. At the center of the ABA signaling network is a subfamily of type 2C protein phosphatases (PP2Cs), which form exclusive interactions with ABA receptors and subfamily 2 Snfl-related kinase (SnRK2s). Here, we report a SnRK2-PP2C complex structure, which reveals marked similarity in PP2C recognition by SnRK2 and ABA receptors. In the complex, the kinase activation loop docks into the active site of PP2C, while the conserved ABA-sensing tryptophan of PP2C inserts into the kinase catalytic cleft, thus mimicking receptor-PP2C interactions. These structural results provide a simple mechanism that directly couples ABA binding to SnRK2 kinase activation and highlight a new paradigm of kinase-phosphatase regulation through mutual packing of their catalytic sites.     

Structure of an intermediate state in protein folding and aggregation

Protein-folding intermediates have been implicated in amyloid fibril formation involved in neurodegenerative disorders. However, the structural mechanisms by which intermediates initiate fibrillar aggregation have remained largely elusive. To gain insight, we used relaxation dispersion nuclear magnetic resonance spectroscopy to determine the structure of a low-populated, on-pathway folding intermediate of the A39V/N53P/V55L (A, Ala; V, Val; N, Asn; P, Pro; L, Leu) Fyn SH3 domain. The carboxyl terminus remains disordered in this intermediate, thereby exposing the aggregation-prone amino-terminal β strand. Accordingly, mutants lacking the carboxyl terminus and thus mimicking the intermediate fail to safeguard the folding route and spontaneously form fibrillar aggregates. The structure provides a detailed characterization of the non-native interactions stabilizing an aggregation-prone intermediate under native conditions and insight into how such an intermediate can derail folding and initiate fibrillation.     

GFAJ-1 is an arsenate-resistant, phosphate-dependent organism

The bacterial isolate GFAJ-1 has been proposed to substitute arsenic for phosphorus to sustain growth. We have shown that GFAJ-1 is able to grow at low phosphate concentrations (1.7 μM), even in the presence of high concentrations of arsenate (40 mM), but lacks the ability to grow in phosphorus-depleted (<0.3 μM), arsenate-containing medium. High-resolution mass spectrometry analyses revealed that phosphorylated central metabolites and phosphorylated nucleic acids predominated. A few arsenylated compounds, including C6 sugar arsenates, were detected in extracts of GFAJ-1, when GFAJ-1 was incubated with arsenate, but further experiments showed they formed abiotically. Inductively coupled plasma mass spectrometry confirmed the presence of phosphorus in nucleic acid extracts, while arsenic could not be detected and was below 1 per mil relative to phosphorus. Taken together, we conclude that GFAJ-1 is an arsenate-resistant, but still a phosphate-dependent, bacterium.     

Biological effects and metabolism of fenoxycarb after treatment of the fourth and the fifth instars of the tobacco budworm,Heliothis virescens F.

Treatment of 4th and 5th instar larvae of Heliothis virescens with different amounts of fenoxycarb induced an increase in weight of the 5th larval instar, prolongation of the 5th larval instar period, or the formation of dauer larvae. No effects were observed during the 4th instar and the moult to the 5th larval instar. To check whether these effects were due to persistence of fenoxycarb in treated larvae, metabolism of this chemical was analysed. Larvae were fed with radio-labelled fenoxycarb at the first day of the 4th or at the first day of the 5th larval instar. Behaviour of the radio-labelled compounds was followed during each instar. At the time of gut purge, the whole of the radio-labelled material was excreted. The effects observed during the 5th instar of 4th-instar-treated larvae do not appear to be due to the persistence of fenoxycarb. The main metabolites of fenoxycarb were identified using coupled gas chromatography and mass spectrometry.     

The Pelagos Sanctuary for Mediterranean marine mammals

• 1. In February 2002, France, Italy and Monaco agreed to establish an international sanctuary for Mediterranean marine mammals. The resulting Pelagos Sanctuary encompasses over 87500 km² of the north‐western Mediterranean Sea, extending between south‐eastern France, Monaco, north‐western Italy and northern Sardinia, and surrounding Corsica and the Tuscan Archipelago.
• 2. The Pelagos Sanctuary illustrates how the tenets of Marine Protected Area (MPA) design can be reconciled with the dynamic nature of oceanic systems, because its spatial scale was defined by oceanographic and ecological considerations, specifically the location of the Ligurian permanent frontal system.
• 3. By expanding protective measures beyond national waters, the Pelagos Sanctuary also sets a precedent for the implementation of pelagic protected areas in the high seas. The Pelagos Sanctuary will contribute to the conservation of the Mediterranean Sea at two scales: (i) locally, by protecting important cetacean foraging and breeding grounds in the Ligurian Sea, and by providing ‘umbrella’ protection to other marine predators in this area; and (ii) regionally, by empowering other conservation measures, such as the Specially Protected Areas Protocol of the Barcelona Convention and the wider goals of the Agreement on the Conservation of Cetaceans of the Black and Mediterranean Seas (ACCOBAMS).
• 4. However, because few cetacean species are resident within the Sanctuary, their effective long‐term conservation will require large‐scale management and coordinated monitoring throughout the Mediterranean basin.

Copyright © 2007 John Wiley & Sons, Ltd.