Catabolic profiles of soil fungal communities along a geographic climatic gradient in Israel

The great distances that typically separate different climatic zones have previously restricted the investigation of climatic controls over soil microbial function to only short-scale gradients, or alternatively, to the investigation of extreme instead of real gradients. In this study, we comparatively assessed sole carbon source utilization profiles and resultant catabolic diversity levels of soil fungal communities along a geographically continuous steep climatic gradient, stretching from the Upper Galilee in the north of Israel to the Negev Desert in the south. Four sites along the gradient were studied, representing humid-Mediterranean, Mediterranean, semi-arid and arid climate types, and they were characterized by a mean annual rainfall of 780, 537, 300, and 90 mm, respectively.The relationships between abiotic soil characteristics and fungal activity parameters (basal respiration, biomass, and the metabolic quotient qCO₂) as well as fungal substrate utilization profiles and functional diversity were explored in the context of climate and seasonality (rainy versus dry seasons).To make an ecologically relevant assessment of fungal activity in soil, a MicroResp? microrespiratory system capable of analyzing whole-soil samples was modified to allow, for the first time, the testing of fungal utilization of low-solubility carbon substrates, alongside other major plant-derived substrates, reflective of the soil environment.The accurate profiling of substrate utilization in the calcareous soils comprising this Mediterranean gradient could not have been accomplished without the correction of measured CO₂ evolution data, which were biased due to CaCO₃–CO₂–H₂O equilibria reactions. The correction of the data was conducted according to a protocol presented in the preceding article of this series.The utilization potential of all 14 substrates tested was higher during the dry than during the rainy season, particularly in the Mediterranean sites, with polymeric substrates being utilized preferentially in the arid sites in comparison with the Mediterranean sites.The distinctive approach exercised in this study enabled us to make a relevant ecological interpretation, particularly in face of the prospect of fungi being responsible for the bulk of recalcitrant organic matter decomposition in soil.     

Scytalidium Wilt of Citrus

In July 1998, a sudden wilt of Star Ruby grapefruit (Citrus paradisi Macf.) occurred in Israel in a region with a warm Mediterranean climate. The wilt of the middle and upper canopy of main limbs was accompanied by gum oozing from the affected branches. The bark of these branches attained a dark colour and the epidermis sloughed off easily revealing a mass of black powder, resulting from copious sporulation of dark conidia. Both the bark and the xylem were intensively colonized with mycelium. The fungus was identified as Scytalidium lignicola Pesante, based on the characteristic mixture of some colourless and dark conidia, produced in branched chains by conversion of the vegetative hyphae. Artificial inoculations induced typical disease symptoms and the fungus was reisolated, thus confirming Koch's postulates. Similar symptoms appeared in Star Ruby interim segments which had been cut and top grafted with various citrus cultivars. This is the first detailed report of pathogenicity of S. lignicola to citrus trees. It is postulated that the disease developed after predisposition of Star Ruby grapefruit trees by comprehensive pruning followed by extremely hot conditions.     

Laboratory and field evaluation of fungicides to control anthracnose stain of citrus fruit

Anthracnose stain on Clementine tangerine and grapefruit, caused byColletotrichum gloeosporioides, is described. Among the fungicides bioassayed against this organism Bordeaux mixture was the most effective copper compound; potent organic compounds were captafol, captan, chlorothalonil, maneb and mancozeb. Bioassay evaluation of fruit treated in the grove revealed that the protection and lasting effect of captafol and Bordeaux mixture were superior to those of chlorothalonil and maneb. Effective field control was achieved even with one prophylactic treatment in July with copper-containing fungicides.     

Canopy conductance of Pinus taeda,Liquidambar styraciflua and Quercus phellos under varying atmospheric and soil water conditions

Sap flow, and atmospheric and soil water data were collected in closed-top chambers under conditions of high soil water potential for saplings of Liquidambar styraciflua L., Quercus phellos L. and Pinus taeda L., three co-occurring species in the southeastern USA. Responses of canopy stomatal conductance (g(t)) to water stress induced by high atmospheric water vapor demand or transpiration rate were evaluated at two temporal scales. On a diurnal scale, the ratio of canopy stomatal conductance to maximum conductance (g(t)/g(t,max)) was related to vapor pressure deficit (D), and transpiration rate per unit leaf area (E(l)). High D or E(l) caused large reductions in g(t)/g(t,max) in L. styraciflua and P. taeda. The response of g(t)/g(t,max) to E(l) was light dependent in L. styraciflua, with higher g(t)/g(t,max) on sunny days than on cloudy days. In both L. styraciflua and Q. phellos, g(t)/g(t,max) decreased linearly with increasing D (indicative of a feed-forward mechanism of stomatal control), whereas g(t)/g(t,max) of P. taeda declined linearly with increasing E(l) (indicative of a feedback mechanism of stomatal control). Longer-term responses to depletion of soil water were observed as reductions in mean midday g(t)/g(t,max), but the reductions did not differ significantly between species. Thus, species that employ contrasting methods of stomatal control may show similar responses to soil water depletion in the long term.     

Variability in net ecosystem exchange from hourly to inter-annual time scales at adjacent pine and hardwood forests: a wavelet analysis

Orthonormal wavelet transformation (OWT) is a computationally efficient technique for quantifying underlying frequencies in nonstationary and gap-infested time series, such as eddy-covariance-measured net ecosystem exchange of CO2 (NEE). We employed OWT to analyze the frequency characteristics of synchronously measured and modeled NEE at adjacent pine (PP) and hardwood (HW) ecosystems. Wavelet cospectral analysis showed that NEE at PP was more correlated to light and vapor pressure deficit at the daily time scale, and NEE at HW was more correlated to leaf area index (LAI) and temperature, especially soil temperature, at seasonal time scales. Models were required to disentangle the impacts of environmental drivers on the components of NEE, ecosystem carbon assimilation (Ac) and ecosystem respiration (RE). Sensitivity analyses revealed that using air temperature rather than soil temperature in RE models improved the modeled wavelet spectral frequency response on time scales longer than 1 day at both ecosystems. Including LAI improved RE model fit on seasonal time scales at HW, and incorporating parameter variability improved the RE model response at annual time scales at both ecosystems. Resolving variability in canopy conductance, rather than leaf-internal CO2, was more important for modeling Ac at both ecosystems. The PP ecosystem was more sensitive to hydrologic variables that regulate canopy conductance: vapor pressure deficit on weekly time scales and soil moisture on seasonal to interannual time scales. The HW ecosystem was sensitive to water limitation on weekly time scales. A combination of intrinsic drought sensitivity and non-conservative water use at PP was the basis for this response. At both ecosystems, incorporating variability in LAI was required for an accurate spectral representation of modeled NEE. However, nonlinearities imposed by canopy light attenuation were of little importance to spectral fit. The OWT revealed similarities and differences in the scale-wise control of NEE by vegetation with implications for model simplification and improvement.     

Sap-flux-scaled transpiration responses to light,vapor pressure deficit,and leaf area reduction in a flooded Taxodium distichum forest

We used 20-mm-long, Granier-type sensors to quantify the effects of tree size, azimuth and radial position in the xylem on the spatial variability in xylem sap flux in 64-year-old trees of Taxodium distichum L. Rich. growing in a flooded forest. This information was used to scale flux to the stand level to investigate variations in half-hourly and daily (24-hour) sums of sap flow, transpiration per unit of leaf area, and stand transpiration in relation to vapor pressure deficit (D) and photosynthetically active radiation (Q(o)). Measurements of xylem sap flux density (J(s)) indicated that: (1) J(s) in small diameter trees was 0.70 of that in medium and large diameter trees, but the relationship between stem diameter as a continuous variable and J(s) was not significant; (2) J(s) at 20-40 mm depth in the xylem was 0.40 of that at 0-20 mm depth; and (3) J(s) on the north side of trees was 0.64 of that in directions 120 degrees from the north. Daily transpiration was linearly related to daily daytime mean D, and reached a modest value of 1.3 mm day(-1), reflecting the low leaf area index (LAI = 2.2) of the stand. Because there was no soil water limitation, half-hourly water uptake was nearly linearly related to D at D < 0.6 kPa during both night and day, increasing to saturation during daytime at higher values of D. The positive effect of Q(o) on J(s) was significant, but relatively minor. Thus, a second-order polynomial with D explained 94% of the variation in J(s) and transpiration. An approximately 40% reduction in LAI by a hurricane resulted in decreases of about 18% in J(s) and stand transpiration, indicating partial stomatal compensation.     

Magnetic resonance imaging findings of spinal intramedullary spirocercosis

Spirocerca lupi is a nematode infecting dogs in tropical and subtropical areas. Aberrant S. lupi migration to different body organs, including the spinal cord, has been documented. To date, the diagnosis of aberrant spinal cord migration was made at post-mortem examination or as an incidental finding, during spinal surgery. We describe two dogs with acute asymmetric paraparesis that were subsequently diagnosed with spinal cord spirocercosis. In magnetic resonance (MR) images of the spine, T2 hyperintense lesions were seen in the spinal cord of both dogs. The lesions appeared isointense on T1-weighted images and focal enhancement was detected after gadolinium administration. The MR imaging findings were compatible with focal inflammation, presumably along the parasite migration tract. Gross and microscopic pathologic findings confirmed the diagnosis of aberrant spinal intramedullary migration of S. lupi in one dog, and in the other dog, the clinical and imaging findings were supportive of this diagnosis.     

Actual and potential transpiration and carbon assimilation in an irrigated poplar plantation

We examined the tradeoffs between stand-level water use and carbon uptake that result when biomass production of trees in plantations is maximized by removing nutrient and water limitations. A Populus trichocarpa Torr. x P. deltoides Bartr. & Marsh. plantation was irrigated and received frequent additions of nutrients to optimize biomass production. Sap flux density was measured continuously over four of the six growing-season months, supplemented with periodic measurements of leaf gas exchange and water potential. Measurements of tree diameter and height were used to estimate leaf area and biomass production based on allometric relationships. Sap flux was converted to canopy conductance and analyzed with an empirical model to isolate the effects of water limitation. Actual and soil-water-unlimited potential CO(2) uptakes were estimated with a canopy conductance constrained carbon assimilation (4C-A) scheme, which couples actual or potential canopy conductance with vertical gradients of light distribution, leaf-level conductance, maximum Rubisco capacity and maximum electron transport. Net primary production (NPP) was about 43% of gross primary production (GPP); when estimated for individual trees, this ratio was independent of tree size. Based on the NPP/GPP ratio, we found that current irrigation reduced growth by about 18% compared with growth with no water limitation. To achieve maximum growth, however, would require 70% more water for transpiration, and would reduce water-use efficiency by 27%, from 1.57 to 1.15 g stem wood C kg(-1) water. Given the economic and social values of water, plantation managers appear to have optimized water use.