Influence of agricultural soils on the growth and reproduction of the bio-indicator Folsomia candida

Soil organisms have been recommended as bio-indicators of soil quality due to their sensitivity to anthropogenic influences and their high degree of site-specificity. The objectives of this study were to determine if the relationship between the soil Collembola, Folsomia candida, and forest soil could be extended to other soils and, if not, to determine the relationship between its life parameters and soils from the different phases of an agricultural rotation sequence. A comparison of growth, reproduction and survival of 1 day old neonates and 10 day old juveniles subjected to a series of different soils (composted manure, pasture soil, forest soil, sand alone, and sand supplemented with yeast) established that the association between F. candida and forest soil quality cannot be automatically transferred to soils from other ecosystems. The test also showed that neonate (1 d) individuals were more sensitive to the different soil treatments than 10 d old juveniles and should be used in future tests. On this basis, neonate F. candida individuals were used to determine if the species could be employed to characterize the agricultural soils from the different phases of an organic or conventional rotation sequence. Results demonstrated that changes in body growth and reproduction constituted suitable criteria to characterize the soil quality of these different phases. The research required to develop these results as a standard bio-indicator test of agricultural soil quality is discussed.     

Transient receptor proteins illuminated: Current views on TRPs and disease

The transient receptor potential proteins (TRPs) make up a very important family of ion channels responsible for a wide array of cellular functions. Originally identified in the visual system of Drosophila melanogaster, these channels are ubiquitously distributed throughout the mammalian system. The TRP family is divided into seven subfamilies in two groups: the first group comprises TRPC (canonical), TRPV (vanilloid), TRPM (melastatin), TRPN (Drosophila NOMPC) and TRPA (ankyrin). The second group contains TRPML (mucolipin) and TRPP (polycystin).The biophysical characterization of TRPs has revealed significantly different activation mechanisms and selectivity between channels. Functional studies have demonstrated that TRPs are necessary for a number of physiological processes, including sensation (such as taste, smell and temperature), hormone secretion and development. TRPs mediate these effects mainly by controlling the intracellular Ca²⁺ concentration, which acts as a second messenger. Recent research has linked TRPs to different diseases. This review considers the impact of TRPs on cell physiology and the abnormalities observed with channel dysfunction.     

In the eye of the beholder: the effect of rater variability and different rating scales on QTL mapping

The agronomic importance of developing durably resistant cultivars has led to substantial research in the field of quantitative disease resistance (QDR) and, in particular, mapping quantitative trait loci (QTL) for disease resistance. The assessment of QDR is typically conducted by visual estimation of disease severity, which raises concern over the accuracy and precision of visual estimates. Although previous studies have examined the factors affecting the accuracy and precision of visual disease assessment in relation to the true value of disease severity, the impact of this variability on the identification of disease resistance QTL has not been assessed. In this study, the effects of rater variability and rating scales on mapping QTL for northern leaf blight resistance in maize were evaluated in a recombinant inbred line population grown under field conditions. The population of 191 lines was evaluated by 22 different raters using a direct percentage estimate, a 0-to-9 ordinal rating scale, or both. It was found that more experienced raters had higher precision and that using a direct percentage estimation of diseased leaf area produced higher precision than using an ordinal scale. QTL mapping was then conducted using the disease estimates from each rater using stepwise general linear model selection (GLM) and inclusive composite interval mapping (ICIM). For GLM, the same QTL were largely found across raters, though some QTL were only identified by a subset of raters. The magnitudes of estimated allele effects at identified QTL varied drastically, sometimes by as much as threefold. ICIM produced highly consistent results across raters and for the different rating scales in identifying the location of QTL. We conclude that, despite variability between raters, the identification of QTL was largely consistent among raters, particularly when using ICIM. However, care should be taken in estimating QTL allele effects, because this was highly variable and rater dependent.     

Haplotypes of “<Emphasis Type="Italic">Candidatus</Emphasis> Liberibacter solanacearum” suggest long-standing separation

Three haplotypes of the recently discovered bacterium species “Candidatus Liberibacter solanacearum” are described and related to geographic ranges. The first two are associated with Zebra Chip/Psyllid Yellows of potatoes and other solanaceous plants, vectored by the tomato/potato psyllid Bactericera cockerelli in North and Central America and New Zealand. The third is associated with diseased carrots in Finland and vectored by the carrot psyllid Trioza apicalis. The haplotypes are described by SNPs on the 16s rRNA, 16s/23s ISR and 50s rplJ and rplL ribosomal protein genes. These SNPs are inherited as a package across the three genes. Haplotype “a” has been found primarily from Honduras and Guatemala through western Mexico to Arizona and California, and in New Zealand. Haplotype “b” is currently known from eastern Mexico and northwards through Texas to south central Washington. These haplotypes show some range overlap in Texas, Kansas and Nebraska. The haplotypes are not yet known to elicit biological differences in the plant or insect hosts. These apparently stable haplotypes suggest separate bacterial populations of long standing.     

Effect of dose and type of fertilizer on flowering and fruiting of vanilla plants

Nutritional status affects the processes of flowering and fruiting of plants. This study was conducted to determine the effects of fertilizer application on flowering, fruiting, and leaf nutrient content of Vanilla planifolia (Jacks. ex Andr). Treatments consisted of the application of grade 10-20-20 nitrogen, phosphorus, and potassium (NPK) fertilizer to the substratum in annual doses of 20, 50, and 100 g/plant plus a monthly application of foliar fertilizer. Two more treatments were foliar fertilization and no fertilization (control). Treatments increased the number of inflorescences and flower buds per plant, as well as the number and weight of fruits per plant, and decreased the abortion of flowers and immature fruits. These effects depended on the type of fertilizer, the amount applied, and the time of evaluation. The best results were obtained with the 100 g/plant/year treatment with an annual production of 1.5 kg of fruits per plant in the second year. Unfertilized plants produced 0.55 kg/plant/year. Differences were also found in foliar content of N, P, K, and copper (Cu) between vegetative and reproductive branches. Application of fertilizer to the substratum appears to improve reproductive parameters of vanilla plants and the production of beans, while foliar fertilization alone was ineffective in increasing crop productivity. Nutrients also seem to translocate from mature leaves to fruit racemes.     

Spatial variation of soil enzyme activities and microbial functional diversity in temperate alley cropping systems

Spatially dependent patterns in microbial properties may exist in temperate alley cropping systems due to differences in litter quality and microclimate in areas under trees compared to those in the alleys. The effect of tree row location was evaluated for its impact on soil enzyme activities and Biolog substrate use patterns. Soils were sampled to a depth of 30 cm at the tree row and at the middle of the alley at two sites: a 21-year-old pecan (Carya illinoinensis)/bluegrass (Poa trivials) intercrop (Pecan site) and a 12-year-old silver maple (Acer saccharinum)/soybean (Glycine max)–maize (Zea mays) rotation (Maple site). Sampling was done in fall 2001 and summer 2002. β-Glucosidase activities, Biolog patterns expressed as average well color (AWC), substrate richness, and Shannon diversity index, and total Kjeldahl nitrogen (TKN) were significantly higher (P<0.05) in the tree row than at the middle of the alley for surface soils at the Pecan site. Fluorescein diacetate (FDA) hydrolytic activity was also higher at the tree row for soils sampled in the fall, but did not differ significantly for soils sampled in the summer. At the Maple site, AWC and substrate richness were significantly higher at the tree row for soils sampled in 2001. Soil volumetric water content and temperature were generally lower in the tree row at the Maple site. The results of this study suggest that functionally different microbial populations may be present under pecan trees compared to cropped alleys which may promote disparities in nutrient availability necessitating differential long-term nutrient management in such alley cropping systems.     

Antimicrobial susceptibility and serotypes of Actinobacillus (Haemophilus) pleuropneumoniae recovered from Missouri swine

The antimicrobial susceptibility of 73 Actinobacillus (Haemophilus) pleuropneumoniae isolates from swine in Missouri was determined with a microdilution minimal inhibitory concentration test system. Serotyping was accomplished by means of co-agglutination. Serotype 1 (39/73) and serotype 5 (30/73) were commonly found, whereas serotype 7 (4/73) was infrequently encountered. Most isolates (MIC90) were found susceptible to ampicillin (amoxicillin), cephalothin, penicillin, erythromycin, gentamicin, and kanamycin. Marked resistance was found with oxytetracycline, tylosin, and sulfadimethoxine. The data indicate that use of ampicillin (amoxicillin) or penicillin may correlate well with the favorable outcome of treatment.     

Fumonisin B1 concentrations in feeds from 45 confirmed equine leukoencephalomalacia cases

During the fall of 1989 and winter of 1990, numerous reports of equine leukoencephalomalacia (ELEM) occurred from many regions of the United States. Typically, horses were consuming feed partially or entirely composed of corn and/or corn screenings. From October 1989 through May 1990, samples from 55 confirmed or suspected ELEM cases were received at the National Veterinary Services Laboratories, Ames, Iowa, for fumonisin B1 analysis. Samples from 9 cases in 1984-1985 were also obtained. Fumonisin B1, a mycotoxin produced by Fusarium moniliforme, causes ELEM, but little is known of naturally occurring toxic or safe levels in feeds. To determine what levels of fumonisin B1 in feeds are associated with ELEM, 45 selected cases were studied. The fumonisin B1 concentrations ranged from less than 1 ppm to 126 ppm, with the majority of the samples above 10 ppm. All types of feeds were included: corn, screenings, sweet feeds, and commercially pelleted rations. The length of exposure varied from 7 to greater than 35 days. Horse feed samples not associated with ELEM were also collected and analyzed. None of the nonproblem feed samples contained fumonisin B1 levels greater than 8 ppm.