Insight into the origin of common bean (<Emphasis Type="Italic">Phaseolus vulgaris</Emphasis> L.) grown in the state of Jammu and Kashmir of north-western Himalayas

Common bean (Phaseolus vulgaris L.) is considered as one of the principal grain legume crops grown in north-western Himalayan state of Jammu and Kashmir (J&K), India. Huge diversity has been observed for this crop in state Jammu and Kashmir. The hilly regions of the state J&K are famous for producing high quality, tasty and highly flavoured beans. In order to characterise this huge diversity and trace the origin of common bean, systematic efforts have been made for the first time in collection, evaluation and characterization of bean collection from Jammu & Kashmir. A set of 428 common bean lines were initially collected/procured and based on cluster analysis using few qualitative traits/site of collection, a diverse set of 96 lines was selected. The PCR assay for phaseolin locus led to the characterization of 96 lines into Meso-american and Andean types. Out of 96 lines tested, 45 possessed “S” type phaseolin and 51 possess “T” type phaseolin. The ITS region of selected local and exotic lines was Sanger sequenced and the sequence analysis of ~ 800 bp long region revealed the presence of 12 SNPs including one promising SNPs showing significant association with phaseolin patterns. The clustering based on ITS sequence data led to the clear cut separation of common bean lines into two distinct clusters based on their phaseolin types. The results of the present study helped to gain insights into the origin of common bean landraces grown in state of J&K, India.     

Cyanobacteria in alkaline soil and the effect of cyanobacteria inoculation with pyrite amendments on their reclamation

The succession of cyanobacteria was studied in a usar (alfisol, solonetz, alkaline) soil, located in a tropical region of upper Gangetic plain, following the first rainfall for a period of 10 months (i.e., July–April). A dozen cyanobacteria were identified to grow on the soil surface and their appearance was in the following order: Microcoleus sp., Calothrix brevissima, Scytonema sp., Cylindrosprmum licheniformae, Cylindrosprmum fertilissima, Nostoc calcicola, Nostoc punctiformae, Aphanothece parietina, Nostoc commune, Aulosira fertilissima, Phormidium sp., and Oscillatoria sp. Among these cyanobacteria, N. calcicola was the dominant species. N. calcicola was inoculated on the alkaline soil and incubated under ambient conditions in the light for 2 years in the laboratory. Changes in soil properties were more rapid after the incorporation of pyrite (FeS₂). Recovery was monitored by using a filamentous heterocystous cyanobacterium N. calcicola and its bicarbonate-resistant (HCO₃^–R) mutant. The mutant strain showed better response to modification of soil pH following growth in soil.     

On the occurrence,distribution and taxonomy of <Emphasis Type="Italic">Momordica subangulata</Emphasis> Blume subsp. <Emphasis Type="Italic">renigera</Emphasis> (G. Don) de Wilde in India

Different authors in India and South East Asia treat dioecious species in the genus Momordica differently. The cultivated ‘bhat karela’ of East and North East India is referred to as Momordica dioica Roxb. by botanists and herbarium curators whereas agricultural scientists, in general, designate it as Momordica cochinchinensis Spreng. A critical study of 266 herbarium sheets housed at CAL and BSISH and in situ field studies at specific pockets in the North East India followed by preliminary characterization revealed its correct identity as Momordica subangulata Blume subsp. renigera (G. Don) de Wilde. First hand information on its occurrence, taxonomy and distribution in India is given. The species was found in wild as well as in homestead cultivation in North Eastern India and exemplify direct utilization of biodiversity by indigenous people.

Cyamopsis tetragonoloba L Taub inoculated with arbuscular mycorrhiza and Pseudomonas fluorescens and treated with mustard oil cake overcome Macrophomina root-rot losses

The effects of inoculation of three arbuscular mycorrhizal (AM) fungi namely, Glomus mosseae, Glomus sinuosum, and Scutellospora erythropa in addition to Pseudomonas fluorescens and treatment with mustard oil cake on root-rot disease of Cyamopsis tetragonoloba L plants caused by Macrophomina phaseolina were evaluated under polyhouse conditions for 2 years. Inoculations of an arbuscular mycorrhizal fungi (AMF) in combination with P. fluorescens and mustard oil cake showed best supporting biocontrol system against the root-rot disease besides increasing the plant height, weight, and yield. The biocontrolling efficiency of dual inoculation (AMF + P. fluorescens) was the second best combination followed by AM plus mustard oil cake. Among the three AM fungi, G. mosseae inoculations showed the best results. Different combined AMF inoculations also altered the concentrations of total soluble sugars, orthodihydric phenols, flavonols, and epicuticular wax contents in host plants.     

Enzymatic treatment and use of starters for the nutrient enhancement in fermented flour of red and white varieties of finger millet (Eleusine coracana).

Two varieties of finger millet (Eleusine coracana)-a tannin-containing red variety, CO13, and nontannin white variety, CO9-processed by treatment with enzymes (cellulase and hemicellulase) and fermentation with starters (from previously fermented finger millet batter), achieved the desirable goals of reduced fermentation time (12 h), increased acidity (2.2 to 2.4%), enhanced in vitro protein digestibility (IVPD) (14 to 26%), and mineral availability compared to 48 h uncontrolled natural fermentation (Usha Antony and Chandra, 1998). Fermentation with starters alone increased titratable acidity (1.02 to 1.88%), IVPD (5. 5 to 22%) and mineral availability, and decreased phytate (23 to 26%) and tannin (10.8 to 40.5%) in the millets. Enzymatic treatment (3 h, 50 degrees C) did not significantly alter the pH, phytate, tannins, IVPD, or HCl-mineral extractability but enhanced fermentative changes. Overall, the changes were marked when the 48 h starter was used and the improvements in nutrient availability was greater in the CO13 variety.     

Cellulose synthase-like CslF genes mediate the synthesis of cell wall (1,3;1,4)-beta-D-glucans

A characteristic feature of grasses and commercially important cereals is the presence of (1,3;1,4)-beta-d-glucans in their cell walls. We have used comparative genomics to link a major quantitative trait locus for (1,3;1,4)-beta-d-glucan content in barley grain to a cluster of cellulose synthase-like CslF genes in rice. After insertion of rice CslF genes into Arabidopsis, we detected (1,3;1,4)-beta-d-glucan in walls of transgenic plants using specific monoclonal antibodies and enzymatic analysis. Because wild-type Arabidopsis does not contain CslF genes or have (1,3;1,4)-beta-d-glucans in its walls, these experiments provide direct, gain-of-function evidence for the participation of rice CslF genes in (1,3;1,4)-beta-d-glucan biosynthesis.     

Olivines: revelation of tracks of charged particles

A one-step, three-component aqueous etchant was developed for revealing the tracks of charged particles in olivine. The etchant reveals tracks of small cone angle, which are equally well developed in all the crystallographic directions. The scope of fossil cosmic-ray track studies in extraterrestrial samples has thus been increased, because olivine is often an abundant constituent and because it has a higher threshold ionization for track registration and has lower uranium, thorium, and trace element concentrations as compared with pyroxenes and feldspars. The etchant does not attack any of the principal rock-forming minerals in normal etching time, which allows a nondestructive study of fossil tracks in thin-section mounts. The study of fossil cosmic-ray tracks in olivine is particularly valuable for investigations of very, very heavy cosmic-ray nuclei and for highly irradiated samples such as those found in the lunar regolith.     

Influence of life stress on depression: moderation by a polymorphism in the 5-HTT gene

In a prospective-longitudinal study of a representative birth cohort, we tested why stressful experiences lead to depression in some people but not in others. A functional polymorphism in the promoter region of the serotonin transporter (5-HT T) gene was found to moderate the influence of stressful life events on depression. Individuals with one or two copies of the short allele of the 5-HT T promoter polymorphism exhibited more depressive symptoms, diagnosable depression, and suicidality in relation to stressful life events than individuals homozygous for the long allele. This epidemiological study thus provides evidence of a gene-by-environment interaction, in which an individual's response to environmental insults is moderated by his or her genetic makeup.     

Saturation of the southern ocean CO2 sink due to recent climate change

Based on observed atmospheric carbon dioxide (CO2) concentration and an inverse method, we estimate that the Southern Ocean sink of CO2 has weakened between 1981 and 2004 by 0.08 petagrams of carbon per year per decade relative to the trend expected from the large increase in atmospheric CO2. We attribute this weakening to the observed increase in Southern Ocean winds resulting from human activities, which is projected to continue in the future. Consequences include a reduction of the efficiency of the Southern Ocean sink of CO2 in the short term (about 25 years) and possibly a higher level of stabilization of atmospheric CO2 on a multicentury time scale.     

Direct demonstration of an adaptive constraint

The role of constraint in adaptive evolution is an open question. Directed evolution of an engineered beta-isopropylmalate dehydrogenase (IMDH), with coenzyme specificity switched from nicotinamide adenine dinucleotide (NAD) to nicotinamide adenine dinucleotide phosphate (NADP), always produces mutants with lower affinities for NADP. This result is the correlated response to selection for relief from inhibition by NADPH (the reduced form of NADP) expected of an adaptive landscape subject to three enzymatic constraints: an upper limit to the rate of maximum turnover (kcat), a correlation in NADP and NADPH affinities, and a trade-off between NAD and NADP usage. Two additional constraints, high intracellular NADPH abundance and the cost of compensatory protein synthesis, have ensured the conserved use of NAD by IMDH throughout evolution. Our results show that selective mechanisms and evolutionary constraints are to be understood in terms of underlying adaptive landscapes.