Toxoplasma gondii virulence prediction using hierarchical cluster analysis based on coding sequences (CDS) of sag1, gra7 and rop18

Toxoplasma gondii consists of three genotypes, namely genotype I, II and III. Based on its virulence, T. gondii can be divided into virulent and avirulent strains. This study intends to evaluate an alternative method for predicting T. gondii virulence using hierarchical cluster analysis based on complete coding sequences (CDS) of sag1, gra7 and rop18 genes. Dendrogram was constructed using UPGMA with a Kimura 80 nucleotide distance measurement. The results showed that the prediction errors of T. gondii virulence using sag1, gra7 and rop18 were 7.41%, 6.89% and 9.1%, respectively. Analysis based on CDS of gra7 and rop18 was able to differentiate avirulent strains into genotypes II and III, whereas sag1 failed to differentiate.     

Virulence of Verticillium lecanii (Z.) against cereal aphids; does timing of infection affect the performance of parasitoids and predators?

BACKGROUND: Entomopathogenic fungi such as Verticillium lecanii (Z.) (Mycotal^®) are used for pest control as an alternative to chemical control. In this study, the effect of V. lecanii on cereal aphids is assessed. In addition, an investigation is carried out to determine whether the use of V. lecanii affects the performance of two natural enemies of aphids, the predator Harmonia axyridis (P.) and the parasitoid Aphidius colemani (V.), in no‐choice experiments under laboratory conditions. RESULTS: The number of Rhopalosiphum padi (L.) and Sitobion avenae (F.) killed was increased by increasing the concentration of V. lecanii. The timing of application of fungus to aphids affected the efficacy of other biocontrol agents, a parasitoid and a predator. Parasitation by A. colemani (V.) in both cereal aphids (S. avenae and R. padi) was not affected by V. lecanii when aphids were first treated with V. lecanii and then exposed to A. colemani. The emergence of adults from parasitised mummies was, however, lower in infected aphids than in uninfected aphids when the aphids were first exposed to the parasitoids and then treated with fungus. The female sex ratio in the emerging adults was lower in V. lecanii‐treated aphids in both species. When aphids were first treated with V. lecanii, 72 h before predation, fewer aphids of both species were consumed by H. axyridis (P.). CONCLUSION: Use of entomopathogenic fungus as a biological control agent could be a complementary strategy in an integrated pest management programme against cereal aphids, but it can reduce the efficiency of other biocontrol agents (parasitoids and predators) when applied simultaneously. © 2012 Society of Chemical Industry     

Gut microbiota—a positive contributor in the process of intermittent fasting-mediated obesity control

Historically, intermittent fasting (IF) has been considered as an effective strategy for controlling the weight of athletes before competition. Along with excellent insight into its application in various spaces by numerous studies, increasing IF-mediated positive effects have been reported, including anti-aging, neuroprotection, especially obesity control. Recently, the gut microbiota has been considered as an essential manipulator for host energy metabolism and its structure has been reported to be sensitive to dietary structure and habits, indicating that there is a potential and strong association between IF and gut microbiota. In this paper, we focus on the crosstalk between these symbionts and energy metabolism during IF which hold the promise to optimize host energy metabolism at various physical positions, including adipose tissue, liver and intestines, and further improve milieu internal homeostasis. Moreover, this paper also discusses the positive function of a potential recommendatory strain (Akkermansia muciniphila) based on the observational data for IF-mediated alternated pattern of gut microbiota and a hopefully regulatory pathway (circadian rhythm) for gut microbiota in IF-involved improvement on host energy metabolism. Finally, this review addresses the limitation and perspective originating from these studies, such as the association with tissue-specific bio-clock and single strain research, which may continuously reveal novel viewpoints and mechanisms to understand the energy metabolism and develop new strategies for treating obesity, diabetes, and metabolic disorders.     

印度河上游流域冰川度日因子变化及其影响因素

当前,基于正积温的度日模型广泛应用于冰川消融研究中,该模型的核心参数是度日因子。根据印度河上游Sachen、Gharko、Barpu冰川2014—2016年的物质平衡和气温实测资料,计算得到消融期内各冰川研究区的度日因子,并分析了度日因子的时空变化特征及影响因素。研究结果显示：Sachen、Gharko、Barpu冰川度日因子均值分别为2.83 mm?d^-1?℃^-1、3.74 mm?d^-1?℃^-1、3.91 mm?d^-1?℃^-1;各冰川度日因子皆随着海拔升高而递增,海拔递增率分别为0.003 7 mm?d^-1?℃^-1?m^-1、0.007 4 mm?d^-1?℃^-1?m^-1、0.004 1 mm?d^-1?℃^-1?m^-1;对于同一观测点而言,度日因子不是一个常数,会随着时间的变化而改变,冰川度日因子随着年际变化呈增加的趋势;度日因子受表碛影响显著,度日因子整体上随着表碛厚度的增加而递减。然而表碛厚度低于2 cm时,表碛的覆盖作用促进了冰川的消融,表碛覆盖区冰川度日因子大于裸露区冰川;冰川朝向的变化对度日因子产生了一定的影响,面向阳坡的冰川度日因子随海拔递增率大于阴坡。     

Growth,yield and water productivity of dry direct seeded rice and transplanted aromatic rice under different irrigation management regimes

Sustainability of traditionally cultivated rice in the rice-wheat cropping zone (RWCZ) of Pakistan is dwindling due to the high cost of production, declining water resources and escalating labour availability. Thus, farmers and researchers are compelled to find promising alternatives to traditional transplanted rice (TPR). A field study was conducted in Punjab, Pakistan, in 2017 and 2018 to explore the trade-offs between water saving and paddy yield, water productivity and economics of two aromatic rice varieties under dry direct seeded rice (DDSR) and TPR. The experiment was comprised of three irrigation regimes on the basis of soil moisture tension (SMT) viz., continuous flooded (>−10 kPa SMT), alternate wetting and drying (AWD) (−20 kPa SMT) and aerobic rice (−40 kPa SMT), maintained under TPR and DDSR systems. Two aromatic rice verities: Basmati-515 and Chenab Basmati-2016 were used during both years of study. In both years, DDSR produced higher yields (13–18%) and reduced the total water inputs (8–12%) in comparison to TPR. In comparison to traditional continuous flooded (CF), AWD under DDSR reduced total water input by 27–29% and improved the leaf area index (LAI), tillering, yield (7–9%), and water productivity (44–50%). The performance of AWD with regard to water savings and increased productivity was much higher in DDSR system as compared to AWD in TPR system. Cultivation of DDSR with aerobic irrigation improved water savings (49–55%) and water productivity (22–30%) at the expense of paddy yield reduction (36–39%) and spikelet sterility. With regard to variety, the highest paddy yield (6.6 and 6.7 t ha⁻¹) was recorded in DDSR using Chenab Basmati-2016 under AWD irrigation threshold that attributed to high tiller density and LAI. The economic analysis showed DDSR as more beneficial rice establishment method than TPR with a high benefit-cost ratio (BCR) when the crop was irrigated with AWD irrigation threshold. Our results highlighted that with the use of short duration varieties, DDSR cultivation in conjunction with AWD irrigation can be more beneficial for higher productivity and crop yield.     

警惕种子传带的南方番茄病毒Southern tomatovirus对我国番茄产业的危害

南方番茄病毒Southern tomato virus (STV)是近年来新发现的一种侵染番茄的病毒, 通常与多种病毒复合侵染, 可能与番茄的褪绿、黄化、衰退、果实变小等症状相关。该病毒最早在1984年发现, 并于2005年命名。我国首先于2015年在山东寿光发现。最近, 我们在山东和北京市多地的番茄样品中均检测到了该病毒, 并通过检测发现国内一些主要品种番茄种子的STV携带率达40%。STV基因组为一条双链RNA, 隶属Amalgaviridae科Amalgavirus属, 是严格种传病毒, 不能通过汁液摩擦接种和嫁接传播。鉴于STV的潜在危害以及与其他病毒高度复合侵染造成的严重损失, 本文介绍了STV检测方法, 并提出应开展对主栽品种的种子检测和针对性防控。     

苗期甘蔗氮高效基因型评价指标的筛选

本研究通过低氮压力选择,筛选出甘蔗氮高效种质,分析影响甘蔗氮高效的重要指标,为甘蔗氮高效育种及栽培提供理论依据。以58份甘蔗种质资源为材料,在苗期采用正常供氮（2 mmol/L N）和低氮（0.2 mmol/L N）处理,分析甘蔗植株形态、干重及氮素在各器官中累积分配的特征。通过主成分分析方法筛选影响甘蔗氮高效利用的重要指标,通过聚类分析对58份种质进行聚类。结果表明,低氮（0.2 mmol/L N）处理可以明显从植物形态区分不同种质的氮利用差异,58份种质低氮条件下的干重范围为0.64~14.75 g/株,氮累积量为5.53~63.00 mg/株,氮利用率范围为115.40~279.30 g/g。对低氮压力下甘蔗干重及氮累积等25个指标进行主成分分析后,提取出4个主要成分,总贡献率为92.35%。通过高、低氮条件下与氮利用效率有关的氮转移系数及基因潜力等19个指标分析后提取出5个主成分,总贡献率为82.21%。影响甘蔗氮高效的重要指标有甘蔗的干重（全株、叶、根）、氮累积量（全株、叶、茎）、氮利用率（全株、叶）、叶的相对氮利用率、茎的基因潜力、茎的相对干物质量和茎的相对氮累积量。经聚类分析后初步将58份甘蔗种质分为氮高效基因型、偏氮高效基因型、偏氮低效基因型和氮低效基因型。     

Nitrogen management improves lodging resistance and production in maize (Zea mays L.) at a high plant density

Lodging in maize leads to yield losses worldwide. In this study, we determined the effects of traditional and optimized nitrogen management strategies on culm morphological characteristics, culm mechanical strength, lignin content,root growth, lodging percentage and production in maize at a high plant density. We compared a traditional nitrogen(N) application rate of 300 kg ha–1(R) and an optimized N application rate of 225 kg ha^–1(O) under four N application modes: 50% of N applied a...     

Yield potential and salt tolerance of quinoa on salt‐degraded soils of Pakistan

Quinoa is recently introduced to Pakistan as a salt‐tolerant crop of high nutritional value. Open field trials were conducted to evaluate its performance on normal and salinity/sodicity‐degraded lands at two locations of different salinity/sodicity levels, S₁ (UAF Farm, Normal Soil), S₂ (Paroka Farm UAF, saline sodic), S₃ (SSRI Farm, normal) and S₄ (SSRI Farm, saline sodic) during 2013–2014. Two genotypes (Q‐2 and Q‐7) were grown in lines and were allowed to grow till maturity under RCBD split‐plot arrangement. Maximum seed yield (3,062 kg/ha) was achieved by Q‐7 at normal field (S₁) soil which was statistically similar with yield of same genotype obtained from salt‐affected field S₂ (2,870 kg/ha). Furthermore, low yield was seen from both genotypes from both S₃ and S₄ as compared to S₁ and S₂. Q‐7 was best under all four conditions. Minimum yield was recorded from Q‐2 (1,587 kg/ha) at S₄. Q‐7 had higher SOD, proline, phenolic and K⁺ contents, and lower Na⁺ content in leaves as compared to Q‐2. High levels of antioxidants and K⁺/Na⁺ of Q‐7 helped to withstand salt stress and might be the cause of higher yields under both normal and salt‐affected soils. Seed quality (mineral and protein) did not decrease considerably under salt‐affected soils even improved seed K⁺, Mg²⁺ and Mn²⁺.     

Mineral bioavailability in grains of Pakistani bread wheat declines from old to current cultivars

Estimating variation in grain mineral concentration and bioavailability in relation to grain yield and the year of cultivar release is important for breeding wheat with increased content of bioavailable minerals. The grain yield and yield components, grain phytate concentration, and concentration and bioavailability of minerals (zinc Zn, iron Fe and calcium Ca) in wheat grains were estimated in 40 wheat cultivars released in Punjab (Pakistan) during the last five decades. Mean grain Zn and Ca concentrations in current-cultivars were significantly lower (≥14%) than in obsolete cultivars released during the Green Revolution (1965–1976). Much of this variation was related to increased grain weight in current-cultivars. There was a positive correlation among minerals (r = 0.39 or higher, n = 40) and minerals with phytate in wheat grains (r = 0.38 or higher, n = 40). The tested cultivars varied widely in grain yield and grain phytate-to-mineral molar ratios (phytate:mineral). Compared to obsolete cultivars, the current-cultivars had a higher phytate:mineral ratio in grains, indicating poor bioavailability of minerals to humans. The study revealed a non-significant relationship between grain yield and phytate:mineral ratios in grains. Therefore, breeding for lower phytate:mineral ratios in wheat grains can ensure increased mineral bioavailability without significant reduction in the yield potential. Future breeding should be focused on developing new genotypes suitable for mineral biofortification and with increased mineral bioavailability in grains.