Population Structure of Phytophthora cinnamomi in South Africa

ABSTRACT Phytophthora cinnamomi isolates collected from 1977 to 1986 and 1991 to 1993 in two regions in South Africa were analyzed using isozymes. A total of 135 isolates was analyzed for 14 enzymes representing 20 putative loci, of which four were polymorphic. This led to the identification of nine different multilocus isozyme genotypes. Both mating types of P. cinnamomi occurred commonly in the Cape region, whereas, predominantly, the A2 mating type occurred in the Mpumalanga region of South Africa. A2 mating type isolates could be resolved into seven multilocus isozyme genotypes, compared with only two multilocus isozyme genotypes for the A1 mating type isolates. Low levels of gene (0.115) and genotypic (2.4%) diversity and a low number of alleles per locus (1.43) were observed for the South African P. cinnamomi population. The genetic distance between the Cape and Mpumalanga P. cinnamomi populations was relatively low (D(m) = 0.165), and no specific pattern in regional distribution of multilocus isozyme genotypes could be observed. The genetic distance between the "old" (isolated between 1977 and 1986) and "new" (isolated between 1991 and 1993) P. cinnamomi populations from the Cape was low (D(m) = 0.164), indicating a stable population over time. Three of the nine multilocus isozyme genotypes were specific to the "old" population, and only one multilocus isozyme genotype was specific to the "new" population. Significant differences in allele frequencies, a high genetic distance (D(m) = 0.581) between the Cape A1 and A2 mating type isolates, significant deviations from Hardy-Weinberg equilibrium, a low overall level of heterozygosity, and a high fixation index (0.71) all indicate that sexual reproduction occurs rarely, if at all, in the South African P. cinnamomi population.     

The return on investment in online education

In the decade since online education emerged in higher education, digital learning has become increasingly commonplace. Various models exist-from those offered fully online to others that combine traditional classroom time with some online activities. This article identifies the dominant emergent models, provides examples of their implementation across higher-education institutions, and evaluates the cost analyses conducted to date on this relatively new teaching and learning model. The ways in which we determine the return on investment depend upon the cost indicators selected, the measures of effectiveness used, and the indices by which institutions mark progress toward their educational and cost objectives.     

Effects of ammonium and inorganic carbon enrichment on growth and yield of a hydroponic tomato crop

Effects of varying the proportions of NO₃^— and NH₄⁺ in the growth medium on seedling growth and tomato fruit yield (Lycopersicon esculentum L. cv. Trust F1) were investigated in greenhouse hydroponic experiments. The presence of NH₄⁺ as the sole N source (11 mM) was toxic: it curtailed growth and decreased chlorophyll content of the leaves. However, at low concentration (10 % of total N), the presence of NH₄⁺, with or without added dissolved inorganic carbon (DIC), increased vegetative growth and fruit yield by ˜ 15 %, and enhanced taste/flavor of the fruits. In DIC‐enriched treatment, pH was maintained at 5.8 by addition of KHCO₃ or as CaCO₃. The presence of NH₄⁺, at 10 % of total N, inhibited NO₃^— uptake rates by ˜ 27 %. The rates of uptake of NO₃^— and NH₄⁺ were comparable (13.3 and 14.2 mmol plant^—1 d^—1, respectively, in the presence of DIC, and 14.7 and 14.0 mmol plant^—1 d^—1, respectively, in the absence of DIC), despite such a large difference in their concentrations in the nutrient feed solution. A higher proportion of NH₄⁺ (up to 50 % of total N) had no further significant effect upon early vegetative growth, but in a long‐term experiment resulted in a high incidence of blossom end‐rot (BER) disease, thereby severely curtailing fruit yield. The presence of even 1.1 mM NH₄⁺ reduced Ca²⁺ and Mg²⁺ accumulation in the leaves as well as in fruits.     

Interaction of red raspberry cultivars with isolates of Phragmidium rubi-idaei

Seven cultivars of red raspberry ( Rubus idaeus ) showed different susceptibility to infection by yellow rust ( Phragmidium rubi-idaei ) at two commercial plantations in Scotland and North Wales, The cultivars Latham, Chief and Boyne were completely resistant. Mailing Delight and Glen Clova supported more telial more than Mailing Jewel. In contrast the last named was the most susceptible cultivar at the aecial stage in Scotland but developed similar numbers of aecia to Glen Clova and Mailing Delight in Wales.
Meeker had an extended latent period, fewer and smaller pustules and a very small yield of urediniospores compared to the other susceptible cultivars, thus showing the characteristics of slow-rusting genotypes. At the Scottish site in 1982, where rust was less than in Wales, Meeker and Mailing Jewel performed differently to the other cultivars at the telial stage. Inoculation studies under controlled environmental conditions with urediniospores from each site revealed an interaction between cultivars and isolates suggesting that variation in pathogenicity is present in populations of P. rubi-idaei in the UK.     

Deal stem disease of asparagus caused by Fusarium culmorum

Deal stem disease in asparagus is characterized by yellow dead stems with reddish lesions, mostly at soil level. There are two types of infection. The first one with lesions on the base of the stem at soil level, as a result of which the stem dies off. In the second type of infection the lesions appear higher up on the stems, while stems remain mostly green. The disease was proved to be caused byFusarium culmorum. This fungus is mainly spread through the soil. Air dispersal was demonstrated but seems of little importance to disease incidence.     

Campylobacter monitoring in German broiler flocks: an explorative time series analysis

Campylobacter, a major zoonotic pathogen, displays seasonality in poultry and in humans. In order to identify temporal patterns in the prevalence of thermophilic Campylobacter spp. in a voluntary monitoring programme in broiler flocks in Germany and in the reported human incidence, time series methods were used. The data originated between May 2004 and June 2007. By the use of seasonal decomposition, autocorrelation and cross-correlation functions, it could be shown that an annual seasonality is present. However, the peak month differs between sample submission, prevalence in broilers and human incidence. Strikingly, the peak in human campylobacterioses preceded the peak in broiler prevalence in Lower Saxony rather than occurring after it. Significant cross-correlations between monthly temperature and prevalence in broilers as well as between human incidence, monthly temperature, rainfall and wind-force were identified. The results highlight the necessity to quantify the transmission of Campylobacter from broiler to humans and to include climatic factors in order to gain further insight into the epidemiology of this zoonotic disease.     

Second round of an interlaboratory comparison of SARS-CoV2 molecular detection assays used by 45 veterinary diagnostic laboratories in the United States

The COVID-19 pandemic presents a continued public health challenge. Veterinary diagnostic laboratories in the United States use RT-rtPCR for animal testing, and many laboratories are certified for testing human samples; hence, ensuring that laboratories have sensitive and specific SARS-CoV2 testing methods is a critical component of the pandemic response. In 2020, the FDA Veterinary Laboratory Investigation and Response Network (Vet-LIRN) led an interlaboratory comparison (ILC1) to help laboratories evaluate their existing RT-rtPCR methods for detecting SARS-CoV2. All participating laboratories were able to detect the viral RNA spiked in buffer and PrimeStore molecular transport medium (MTM). With ILC2, Vet-LIRN extended ILC1 by evaluating analytical sensitivity and specificity of the methods used by participating laboratories to detect 3 SARS-CoV2 variants (B.1; B.1.1.7 [Alpha]; B.1.351 [Beta]) at various copy levels. We analyzed 57 sets of results from 45 laboratories qualitatively and quantitatively according to the principles of ISO 16140-2:2016. More than 95% of analysts detected the SARS-CoV2 RNA in MTM at ≥500 copies for all 3 variants. In addition, for nucleocapsid markers N1 and N2, 81% and 92% of the analysts detected ≤20 copies in the assays, respectively. The analytical specificity of the evaluated methods was >99%. Participating laboratories were able to assess their current method performance, identify possible limitations, and recognize method strengths as part of a continuous learning environment to support the critical need for the reliable diagnosis of COVID-19 in potentially infected animals and humans.