Effects of compaction on soil hydraulic properties,penetration resistance and water flow patterns at the soil profile scale

The aim of this study was to quantify the effects of compaction on water flow patterns at the soil profile scale. Control and trafficked plots were established in field trials at two sites. The trafficked treatment was created by four passes track‐by‐track with a three‐axle dumper with a maximum wheel load of 5.8 Mg. One year later, dye‐tracing experiments were performed and several soil mechanical, physical and hydraulic properties were measured to help explain the dye patterns. Penetration resistance was measured to 50 cm depth, with saturated hydraulic conductivity (K_s), bulk density, and macroporosity and mesoporosity being measured on undisturbed soil cores sampled from three depths (10, 30 and 50 cm). Significant effects of the traffic treatment on the structural pore space were found at 30 cm depth for large mesopores (0.3–0.06 mm diameter), but not small mesopores (0.06–0.03 mm) or macroporosity (pores > 0.3 mm). At one of the sites, ponding was observed during the dye‐tracing experiments, especially in the trafficked plots, because of the presence of a compacted layer at plough depth characterized by a larger bulk density and smaller structural porosity and K_s values. Ponding did not induce any preferential transport of the dye solution into the subsoil at this site. In contrast, despite the presence of a compacted layer at 25–30 cm depth, a better developed structural porosity in the subsoil was noted at the other site which allowed preferential flow to reach to at least 1 m depth in both treatments.     

To what extent can maternal inherited immunity acquired from a crustacean‐enhanced diet improve the performance and vitality of the offspring and enhance profitability of European Sea bass (Dicentrarchus labrax)?

This study was conducted to investigate the effects of maternal inherited immunity acquired from crustacean‐enhanced diets on the vitality and profitability of sea bass offspring. Newly hatched larvae produced from three groups of broodstock were evaluated. The broodstock were fed (a) a basal diet (BD), (b) a Palaemon‐supplemented diet (PSD), and (c) an Artemia‐supplemented diet (ASD) for 42 days. A total of 400,000 larvae at 3 days posthatch (DPH) produced from each treatment were stocked in larval rearing tanks at 40 larvae/L for 42 days. Survival (%) was improved by 37 and 9.96% in the groups fed ASD and PSD compared with the control group. The growth, swim bladder (%), and condition factor all significantly (p ≤ 0.05) improved in the postlarvae produced from broodstock enhanced with crustacean diets. Compared with the BD group, the serum lysozyme activities of the fish groups fed ASD and PSD increased by 45.6 and 11.7%, respectively. Sea bass fry (90DPH) produced from broodstock fed ASD showed the best tolerance to salinity/temperature stress tests. Furthermore, the profitability improved in ASD and PSD compared with the BD group. In conclusion, sea bass broodstock enhanced with Artemia biomass produced offspring of superior quality with less cost and greater profit margins.     

Reproducible genomic DNA preparation from diverse crop species for molecular genetic applications

Background

Several high-throughput molecular genetic analyses rely on high-quality genomic DNA. Copurification of other molecules can negatively impact the functionality of plant DNA preparations employed in these procedures. Isolating DNA from agronomically important crops, such as sugarcane, rice, citrus, potato and tomato is a challenge due to the presence of high fiber, polysaccharides, or secondary metabolites. We present a simplified, rapid and reproducible SDS-based method that provides high-quality and -quantity of DNA from small amounts of leaf tissue, as required by the emerging biotechnology and molecular genetic applications.

Results

We developed the TENS-CO method as a simplified SDS-based isolation procedure with sequential steps of purification to remove polysaccharides and polyphenols using 2-mercaptoethanol and potassium acetate, chloroform partitioning, and sodium acetate/ethanol precipitation to yield high-quantity and -quality DNA consistently from small amounts of tissue (0.15 g) for different plant species. The method is simplified and rapid in terms of requiring minimal manipulation, smaller extraction volume, reduced homogenization time (20 s) and DNA precipitation (one precipitation for 1 h). The method has been demonstrated to accelerate screening of large amounts of plant tissues from species that are rich in polysaccharides and secondary metabolites for Southern blot analysis of reporter gene overexpressing lines, pathogen detection by quantitative PCR, and genotyping of disease-resistant plants using marker-assisted selection.

Conclusion

To facilitate molecular genetic studies in major agronomical crops, we have developed the TENS-CO method as a simple, rapid, reproducible and scalable protocol enabling efficient and robust isolation of high-quality and -quantity DNA from small amounts of tissue from sugarcane, rice, citrus, potato, and tomato, thereby reducing significantly the time and resources used for DNA isolation.

     

Fertility and ploidy of gametes of allodiploid and allotriploid loaches produced by diploid <Emphasis Type="Italic">Misgurnus anguillicaudatus</Emphasis> females and <Emphasis Type="Italic">Paramisgurnus dabryanus</Emphasis> males

Artificial and natural hybridization of dojo loach Misgurnus anguillicaudatus (2N = 50, DD for short) and large-scale loach Paramisgurnus dabryanus (2N = 48, PP for short) are well-grown. However, these hybrid loaches have not yet been examined for fertility and ploidy of gametes. Here, histological observations, artificial propagation, observations of embryonic development, larval morphology, and ploidy analyses were conducted to determine the fertility and ploidy of gametes of allodiploid (DP for short) and allotriploid (DDP for short) loaches, produced by DD females × PP males and induced from fertilized eggs of DD females × PP males by cold shock to prevent the second polar body release, respectively. The ovaries of DP and DDP included smaller number of eggs when compared with those of the control DD, while full-grown oocytes were observed. Testes of these two loaches were delayed-developed without spermatids or mature spermatozoa. Results obtained here showed that DP and DDP were fertility-weakened female and sterile male. Moreover, DP females and DDP females could, respectively, produce few viable haploid eggs and few viable haploid and diploid eggs. This study will provide valuable information for fish hybrid researches.     

Fat Soluble Vitamins,Cholesterol, and Fatty Acid Composition of Wild and Farmed Black Mussel (Mytilus galloprovincialis) Consumed in Bulgaria

The most commercially important mollusk species from the Bulgarian Black Sea is the black mussel (Mytilus galloprovincialis). There is limited information about fat soluble vitamins, cholesterol, and fatty acid content of the Bulgarian Black Sea mussel. The aims of the present study are to determine and compare the fat soluble vitamin contents as well as relative daily intake of vitamins, cholesterol, fatty acid content, and lipid quality indices (atherogenic, thrombogenic) in the wild and farmed black mussels. Fat soluble vitamins and cholesterol were analyzed simultaneously using reverse phase high performance liquid chromatography. The fatty acid composition was analyzed by gas chromatography-mass spectrometry. In both mussels, fat soluble vitamins A and E were in high amounts, but they were a better source of vitamin D₃. Cholesterol contents were 67.54 ± 0.50 mg/100 g ww (wild) and 49.88 ± 0.30 mg/100 g ww (farmed). The fatty acid distributions of wild and farmed mussels are: saturated > polyunsaturated > monounsaturated fatty acid. The n3/n6 and polyunsaturated/saturated fatty acid ratios were greater than that recommended by the Food and Agriculture Organization of the United Nations/World Health Organization (FAO/WHO). A 100-g edible portion of both mussels contained from 0.252 g (wild) to 0.425 g (farmed) of eicosapentaenoic acid (EPA, C20:5n-3) + docosahexaenoic acid (DHA, 22:6n-3).     

Matrilin-1 expression is increased in the vertebral column of Atlantic salmon (<Emphasis Type="Italic">Salmo salar</Emphasis> L.) individuals displaying spinal fusions

We have previously characterized the development of vertebral fusions induced by elevated water temperature in Atlantic salmon. Molecular markers of bone and cartilage development together with histology were used to understand the complex pathology and mechanism in the development of this spinal malformation. In this study, we wanted to use proteomics, a non-hypothetical approach to screen for possible new markers involved in the fusion process. Proteins extracted from non-deformed and fused vertebrae of Atlantic salmon were therefore compared by two-dimensional electrophoresis (2DE) and MALDI-TOF analysis. Data analysis of protein spots in the 2DE gels demonstrated matrilin-1, also named cartilage matrix protein, to be the most highly up-regulated protein in fused compared with non-deformed vertebrae. Furthermore, real-time PCR analysis showed strong up-regulation of matrilin-1 mRNA in fused vertebrae. Immunohistochemistry demonstrated induced matrilin-1 expression in trans-differentiating cells undergoing a metaplastic shift toward chondrocytes in fusing vertebrae, whereas abundant expression was demonstrated in cartilaginous tissue and chordocytes of both non-deformed and fused vertebrae. These results identifies matrilin-1 as a new interesting candidate in the fusion process, and ratify the use of proteomic as a valuable technique to screen for markers involved in vertebral pathogenesis.     

Monitoring a loss: Detection of the semi‐aquatic crocodile lizard (Shinisaurus crocodilurus) in inaccessible habitats via environmental DNA

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Rapid visualization of mammary gland tumor lesions of dogs using the enzyme-activated fluorogenic probe; γ-glutamyl hydroxymethyl rhodamine green

Since gamma-glutamyl transpeptidase (GGT) is highly and locally expressed in human breast cancer, a GGT-enzymatically activatable fluorescent probe, gamma-glutamyl hydroxymethyl rhodamine green (gGlu-HMRG), has been developed to detect the human breast cancer area with high performance. In this study, GGT expression and the efficacy of gGlu-HMRG on visualization were investigated in canine mammary gland tumors (MGT). Seventeen non-fixed fresh-frozen MGT specimens and each peritumoral control tissue were utilized. The GGT mRNA levels were highly observed in the tumor specimens compared with the control. GGT immunostaining was mostly observed on the cell membrane and cytosol of the alveolar and duct mammary epithelium of MGT tissues. These signals were strongly positive in several cases while they were mild to not observed in other cases. When gGlu-HMRG solution was dropped to the non-fixed tissue pieces of MGT or control tissues, the fluorescence intensities (FIs) were measured using Maestro in-vivo imaging device. FIs in MGT tissues were significantly higher than each control tissue 20 min after treatment. Based on Youden index method said that the maximum sensitivity and specificity of FI was 82.4% and 82.4%. These findings suggest that GGT is highly expressed in several MGTs in dogs and gGlu-HMRG could visualize at least a part of MGT tissues in dogs. Nevertheless, it should be needed to assess the false-negative areas more carefully in canine than human cases.