The first report on the occurrence race 9 of the tomato leaf mold pathogen Cladosporium fulvum (syn. Passalora fulva) in Cuba

Leaf mold caused by the fungus Cladosporium fulvum (syn. Passalora fulva) has been a serious disease in greenhouse tomatoes in Cuba, but less damage is seen in outdoor grown plants. This study was conducted to identify races of the causal agent of tomato leaf mold. A total of 36 single conidial isolates obtained from different provinces in Cuba and the reference strain race 0 were inoculated on a differential set of tomato cultivars carrying different Cf resistance genes. Further, a polymerase chain reaction (PCR) was developed using Avr9 gene-specific primers. As result, all isolates could overcome the Cf-9 resistance gene only, but not resistance genes Cf-2, Cf-4 and Cf-5 and must therefore be coined race 9. Race identity was also confirmed by PCR analysis, which showed that the Avr9 gene was not amplified in any of 36 single conidial isolates studied proving that they all lack this gene. This is the first report of the occurrence of race 9 of C. fulvum in Cuba. Pyramiding other Cf genes in hybrid of tomato may provide a more durable level of resistance to C. fulvum.

     

Real-time PCR quantification and spatio-temporal distribution of airborne inoculum of Mycosphaerella graminicola in Belgium

Two kinds of propagules play a role in Mycosphaerella graminicola dissemination: splash-dispersed pycnidiospores and airborne sexual ascospores. A method based on real-time polymerase chain reaction (PCR) assay and using Burkard spore traps was developed to quantify M. graminicola airborne inoculum. The method was tested for its reliability and applied in a spore trap network over a 2-year period in order to investigate the spatio-temporal distribution of airborne inoculum in Belgium. At four experimental sites, airborne inoculum was detected in both years. A seasonal distribution was observed, with the highest mean daily quantities (up to 351.0 cDNA) trapped in July and with clusters detected from September to April. The first year of trapping, a mean daily quantity of 15.7 cDNA of M. graminicola airborne inoculum was also detected in the air above a building in a city where the spatio-temporal distribution showed a similar pattern to that in the field. Mean daily quantities of up to 60.7 cDNA of airborne inoculum were measured during the cereal stem elongation and flowering stages, suggesting that it contributes to the infection of upper leaves later in the season. Most detection, however, tended to occur between flowering and harvest, suggesting significant production of pseudothecia during that period. Variations in mean daily quantities from 1.0 to 48.2 cDNA were observed between sites and between years in the patterns of airborne inoculum. After stem elongation, the quantities detected at a site were positively correlated with the disease pressure in the field. Quantities trapped at beginning of the growing season were also well correlated with the disease level the previous year. Multiple regressions revealed that some factors partly explain the daily variations of airborne inoculum.     

Variability of the particle size of suspended sediment during highly concentrated flood events in a small mountainous catchment

Purpose

There is a growing interest in the characterization of the particle size of sediment due to its impact on particle dynamics, especially for connectivity purpose. This study determined the particle size distribution of suspended sediment in a mountainous catchment, with the aim to evaluate the variability of particle size during floods, the main controlling factors, and if indirect information from hillslopes was useful for the interpretation of particle size measured at the catchment outlet. This work involved the development of a measurement protocol.

Material and methods

Samples were collected automatically from streamwater during flood events using an ISCO 3700 sampler. Five events were analyzed for their particle size distributions using a Malvern Mastersizer 2000. Because the samples were too concentrated, two different protocols were tested to address the errors made during the subsampling step: using a pipette and a home-made device with successive dilution phases.

Results and discussion

High errors occurred when using a pipette to extract particles within a stirred sample. The maximum errors were reduced from 1,600 to 30?% using the device described within this study. Particles were found to be aggregated at various levels regardless of the discharge they were sampled at. Their size was found to be either variable or stable at the event scale, and statistical analyses revealed that discharge was the factor that best correlated with particle size. The results obtained in this study are in agreement with the few other studies in comparable environments. Some hypothesis are put forward and discussed to explain the positive relationship between particle size and discharge. Input from hillslopes seems to have a measureable effect in this headwater catchment.

Conclusions

While the need for in situ measurements has long been stressed in lowland rivers, estuaries, and coastal environments, it was shown that the use of an accurate dilution protocol could provide some physically interpretable measurements on the particle size distributions of suspended sediment transported in a mountainous catchment. It also appears that hillslope information has to be considered when studying particle size measured at the catchment outlet.     

Fungicide resistance status in French populations of the wheat eyespot fungi Oculimacula acuformis and Oculimacula yallundae

Eyespot, caused by Oculimacula acuformis and Oculimacula yallundae, is the major foot disease of winter wheat in several European countries, including France. It can be controlled by chemical treatment between tillering and the second node stage. The fungicides used include antimicrotubule toxicants (benzimidazoles), inhibitors of sterol 14α‐demethylation (DMIs) or of succinate dehydrogenase (SDHIs), the anilinopyrimidines cyprodinil and the benzophenone metrafenone. Since the early 1980s, a long‐term survey has been set up in France to monitor changes in the sensitivity of eyespot populations to fungicides. Resistance to benzimidazoles has become generalised since the early 1990s, in spite of the withdrawal of this class of fungicides. In the DMI group, resistance to triazoles is generalised, whereas no resistance to the triazolinethione prothioconazole has yet developed. Resistance to the imidazole prochloraz evolved successively in O. acuformis and O. yallundae and is now well established. Specific resistance to cyprodinil has also been detected, but its frequency has generally remained low. Finally, since the early 2000s, a few strains of O. yallundae displaying multidrug resistance (MDR) have been detected. These strains display low levels of resistance to prothioconazole and SDHIs, such as boscalid. Knowledge of the spatiotemporal distribution in France of O. acuformis and O. yallundae field strains resistant to fungicides allows resistance management strategies for eyespot fungi in winter wheat to be proposed.© 2012 Society of Chemical Industry     

Contribution of MX dynamin, oligoadenylate synthetase, and protein kinase R to anti-paramyxovirus activity of type 1 interferons in vitro

OBJECTIVE: To determine the contribution of MX dynamin, oligoadenylate synthetase (OAS), and double-stranded RNA-dependent protein kinase R (PKR) to the antiviral effects of type 1 interferons (IFNs) against bovine parainfluenza-3 virus (PI-3V) infection of Vero cells. SAMPLE POPULATION: Vero cell cultures. PROCEDURES: PI-3V yield was first compared between control and transfected type 1 IFNs-incompetent Vero cells expressing recombinant OAS or MX proteins. Afterwards, phosphorylation of eukaryotic initiation factor 2 alpha (eIF2alpha) was used to scale the degree of PKR activation upon infection of Vero cells by PI-3V. RESULTS: Overexpression of OAS did not result in significantly decreased viral replication. Phosphorylated eIF2alpha forms, the hallmark of PKR activation, were not increased in IFNalpha-primed infected Vero cells. Although human MXA contributed to partial blockade of replication of bovine PI-3V, the antiviral effect was not as strong as that of IFNalpha. CONCLUSIONS AND CLINICAL RELEVANCE: The powerful anti-Paramyxovirus activity of type 1 IFNs is mediated by noncanonic pathways.     

应用穆斯堡尔(Mössbauer)谱学方法研究燥红土中的氧化铁

本文应用穆斯堡尔谱学方法,研究了我国南方地区不同干热条件下形成的燥红土中存在的氧化铁的类型、性质及其Al³⁺同晶代换作用.我们所研究的4种燥红土表层胶体部分(<2微米),在室温和80K温度下测量了穆新堡尔谱,在室温下谱线出现超顺磁状态,80K温度下观察到明显的磁分裂六线谱.计算机拟合结果表明,氧化铁的类型以赤铁矿和针铁矿为主,并以细颗粒状态存在.反映了热带、亚热带土壤的特点.不同干旱条件下,土壤胶体部分赤铁矿、针铁矿所占的比例也有明显的不同,愈干旱赤铁矿的比例愈高.     

多环芳烃污染土壤的微生物与植物联合修复研究进展

通过对江西省余江县洪湖乡历史资料的分析,结合农户经济行为调查,阐述了典型红壤丘陵区农作系统的演变过程及其特征,并且针对农业生产中存在的问题,提出解决对策。分析结果表明,20世纪50年代以前,长江中下游流域农作系统的演变过程可以分为丘陵和河谷砂性水稻土的游垦系统-雨季水稻耕作系统-水旱轮作系统3个阶段。20世纪50年代以后,江西省余江县洪湖乡农作系统的演变分为农业革命和现有系统2个阶段,粮食安全驱动和生存型经济福利驱动是其演变的主要驱动力。80年代以来,随着经济的发展,一部分农作系统演变为可持续再生产型,但需要较高的劳力和资金投入,并且有物价和农业政策等方面的风险。目前发展区域可持续农业需要解决的关键问题是优化农林牧副渔结构、扩大土地经营规模、增加种粮比较效益、促进信贷资金使用、提高劳力素质。     

New method for a two-step hydrolysis and chromatographic analysis of pectin neutral sugar chains

A new method for the determination of the main neutral sugars in pectin has been developed. The sample preparation involves a mild chemical attack followed by an enzymatic hydrolysis. The completeness and nondestructive character of the method are demonstrated by comparison of the results obtained with different acids such as H2SO4, HCl, and trifluoroacetic acid (TFA) at different concentrations (2, 1, or 0.2 M) at two temperatures (80 or 100 degrees C). The chemical hydrolysis of pectin neutral sugar chains with strong acid (1 or 2 M) and high temperature (100 degrees C) shows that the liberation of the pectin sugars is not realized at the same rate for each sugar. Different optimum conditions are thus obtained. However, the chemical pectin hydrolysis with 0.2 M TFA at 80 degrees C is characterized by the liberation of pectin neutral sugar side chains without any degradation within 72 h of hydrolysis. Under these conditions, the liberation of some pectin sugars, essentially galactose, glucose, and rhamnose, was not complete. An enzymatic hydrolysis is necessary to obtain a complete release of all the sugars. The combination of the two treatments, a chemical hydrolysis realized with diluted acid (0.2 M) for 72 h at low temperature (80 degrees C) on one hand and an enzymatic hydrolysis on the other hand, allow a total liberation of pectin sugars. The quantitative analysis of the carbohydrates is realized with accuracy, high selectivity, and sensitivity with high-performance anion-exchange chromatography with pulsed-amperometric detection. The sugars can be analyzed without any derivatization with a limit of quantification of 0.1 mM.