Bacteria able to control foot and root rot and to promote growth of cucumber in salinated soils

The aim of the present work was to test known bacterial plant growth-promoting strains for their ability to promote cucumber plant growth in salinated soil and to improve cucumber fruit yield by protecting these plants against soil-borne pathogens. Fifty-two plant-beneficial bacterial strains were evaluated for their ability to protect plants against cucumber foot and root rot after bacterization of the seeds and infestation of salinated soil with the isolated Fusarium solani pathogen. Based on the results of initial screenings, five efficient strains were selected, namely Serratia plymuthica RR-2-5-10, Stenotrophomonas rhizophila e-p10, Pseudomonas fluorescens SPB2145, Pseudomonas extremorientalis TSAU20, and P. fluorescens PCL1751. All five strains are salt tolerant since they grow well in a medium to which 3% NaCl was added. Infestation of the soil with F. solani resulted in an increase of the percentage of diseased plants from 17 to 54. Priming of seedlings with the five selected bacterial strains reduced this proportion to as low as 10%. In addition, in the absence of an added pathogen, all five strains showed a significant stimulatory effect on cucumber plant growth, increasing the dry weight of whole cucumber plants up to 62% in comparison to the non-bacterized control. The strains also increased cucumber fruit yield in greenhouse varying from 9% to 32%. We conclude that seed priming with the selected microbes is a very promising approach for improving horticulture in salinated soils. Moreover, allochthonous strains isolated from non-salinated soil, from a moderate or even cold climate, and from other plants than cucumber, functioned as well as autochthonous strains as cucumber-beneficial bacteria in salinated Uzbek soils. These results show that these plant-beneficial strains are robust and they strongly suggest they can also be used successfully in case the climate gets warmer and the soils will become more salinated. Finally, the mechanisms by which they may exert their plant-beneficial action are discussed.     

Reconfigurable knots and links in chiral nematic colloids

Tying knots and linking microscopic loops of polymers, macromolecules, or defect lines in complex materials is a challenging task for material scientists. We demonstrate the knotting of microscopic topological defect lines in chiral nematic liquid-crystal colloids into knots and links of arbitrary complexity by using laser tweezers as a micromanipulation tool. All knots and links with up to six crossings, including the Hopf link, the Star of David, and the Borromean rings, are demonstrated, stabilizing colloidal particles into an unusual soft matter. The knots in chiral nematic colloids are classified by the quantized self-linking number, a direct measure of the geometric, or Berry's, phase. Forming arbitrary microscopic knots and links in chiral nematic colloids is a demonstration of how relevant the topology can be for the material engineering of soft matter.     

Induced pluripotent stem cell lines derived from human somatic cells

Somatic cell nuclear transfer allows trans-acting factors present in the mammalian oocyte to reprogram somatic cell nuclei to an undifferentiated state. We show that four factors (OCT4, SOX2, NANOG, and LIN28) are sufficient to reprogram human somatic cells to pluripotent stem cells that exhibit the essential characteristics of embryonic stem (ES) cells. These induced pluripotent human stem cells have normal karyotypes, express telomerase activity, express cell surface markers and genes that characterize human ES cells, and maintain the developmental potential to differentiate into advanced derivatives of all three primary germ layers. Such induced pluripotent human cell lines should be useful in the production of new disease models and in drug development, as well as for applications in transplantation medicine, once technical limitations (for example, mutation through viral integration) are eliminated.     

The problem with determining atomic structure at the nanoscale

Emerging complex functional materials often have atomic order limited to the nanoscale. Examples include nanoparticles, species encapsulated in mesoporous hosts, and bulk crystals with intrinsic nanoscale order. The powerful methods that we have for solving the atomic structure of bulk crystals fail for such materials. Currently, no broadly applicable, quantitative, and robust methods exist to replace crystallography at the nanoscale. We provide an overview of various classes of nanostructured materials and review the methods that are currently used to study their structure. We suggest that successful solutions to these nanostructure problems will involve interactions among researchers from materials science, physics, chemistry, computer science, and applied mathematics, working within a "complex modeling" paradigm that combines theory and experiment in a self-consistent computational framework.     

Inversions and gene order shuffling in Anopheles gambiae and A. funestus

In tropical Africa, Anopheles funestus is one of the three most important malaria vectors. We physically mapped 157 A. funestus complementary DNAs (cDNAs) to the polytene chromosomes of this species. Sequences of the cDNAs were mapped in silico to the A. gambiae genome as part of a comparative genomic study of synteny, gene order, and sequence conservation between A. funestus and A. gambiae. These species are in the same subgenus and diverged about as recently as humans and chimpanzees. Despite nearly perfect preservation of synteny, we found substantial shuffling of gene order along corresponding chromosome arms. Since the divergence of these species, at least 70 chromosomal inversions have been fixed, the highest rate of rearrangement of any eukaryote studied to date. The high incidence of paracentric inversions and limited colinearity suggests that locating genes in one anopheline species based on gene order in another may be limited to closely related taxa.     

Functional and Bioactive Properties of Peptides Derived from Marine Side Streams

In fish processing, a great amount of side streams, including skin, bones, heads and viscera, is wasted or downgraded as feed on a daily basis. These side streams are rich sources of bioactive nitrogenous compounds and protein, which can be converted into peptides through enzymatic hydrolysis as well as bacterial fermentation. Peptides are short or long chains of amino acids differing in structure and molecular weight. They can be considered as biologically active as they can contribute to physiological functions in organisms with applications in the food and pharmaceutical industries. In the food industry, such bioactive peptides can be used as preservatives or antioxidants to prevent food spoilage. Furthermore, peptides contain several functional qualities that can be exploited as tools in modifying food ingredient solubility, water-holding and fat-binding capacity and gel formation. In the pharmaceutical industry, peptides can be used as antioxidants, but also as antihypertensive, anticoagulant and immunomodulatory compounds, amongst other functions. On the basis of their properties, peptides can thus be used in the development of functional foods and nutraceuticals. This review focuses on the bioactive peptides derived from seafood side streams and discusses their technological properties, biological activities and applications.     

Prediction of potential freshwater pearl mussel habitat aids in discovery of a large population of Margaritifera laevis in Iturup Island,Russia

1. Freshwater pearl mussels (family Margaritiferidae) are sensitive to human impact and environmental changes. Large declines in their abundance have prompted studies of distribution and estimations of population densities.
2. Iturup Island, a part of Kuril Islands, Russia, is considered to be within the distribution area of freshwater pearl mussels, but this information is based on only two specimens collected several decades ago. Detailed survey of the island is challenging as most of its territory is nearly impassable.
3. A preliminary analysis of island rivers was carried out prior to the surveys to discover potential freshwater pearl mussel habitats. Based on previous experience from European Russia, freshwater pearl mussel habitat was expected to occur in rivers flowing out of lowland lakes.
4. Live individuals of Margaritifera laevis were found during surveys in one river together with the unionid Beringiana beringiana, which were also found in two other rivers where the predicted habitat occurred. Based on prediction and surveys, the occurrence of freshwater pearl mussels in other rivers of Iturup Island is unlikely.
5. Pearl mussels were concentrated in a small section of the Zmeika River with a population of about 100,000 mussels. Present threats to the population include overharvest of host fish masou salmon (Oncorhynchus masou).
6. Surveys using similar methods can help to reveal unknown freshwater mussel populations on other Kuril Islands and on the mainland.

     

The effect of the addition of algae feeding stimulants to artificial diets for the sea urchin Tripneustes gratilla

A key concern when developing artificial aquaculture diets is their palatability. This study investigated whether the palatability of artificial diets could be improved by incorporating a small quantity of highly preferred natural foods as feeding stimulants. The preference of Tripneustes gratilla for marine plants with which it co-occurs naturally in New South Wales, Australia, was assessed in a laboratory choice feeding experiment. T. gratilla displayed significant preference for the brown alga Ecklonia radiata over five other algae and one seagrass when they were offered simultaneously. Total protein or energy in the plants was not found to account for this preference. However, T. gratilla showed no preference among E. radiata, Sargassum linearifolium and Ulva lactuca when they were dried. Three artificial diets were made by incorporating one of each of these dried seaweeds at 5% dry weight. Although not statistically significant, T. gratilla ate more than twice as much the artificial diet containing S. linearifolium compared to the control diet containing no algae in a choice feeding experiment. In a no-choice feeding experiment, T. gratilla consumed significantly more of the Ecklonia and the Sargassum diets than the control diet despite each of the diets containing approximately the same protein and energy levels. T. gratilla consumed 49 and 43% more protein, and 37 and 44% more energy, respectively, when fed with the Ecklonia and the Sargassum diets compared to the control diet. Juvenile T. gratilla grew significantly faster on a wet weight basis on the Sargassum diet than the control diet at an average increase of 2.4% per day. These results indicate that the small amounts of palatable seaweed added to the artificial diets act as feeding stimulants, increasing the acceptability of artificial sea urchin diets, boosting the protein and energy consumption, and significantly increasing the growth of T. gratilla. Moreover, the fast growth of T. gratilla achieved in this study also indicates that this species would be a good candidate for commercial aquaculture.     

Optimization of treatment regimes for controlled sex differentiation and sterilization in wild rainbow trout (Salmo gairdneri Richardson) by oral administration of 17α-methyltestosterone

The oral administration of 17α-methyltestosterone (MT) to wild rainbow trout fry at concentrations ranging from 1 to 100 mg/kg diet for periods up to 120 days following swim-up produced male-female ratios substantially different from controls. 100% males were produced with low MT doses (1, 3 and 9 mg/kg diet) administered for 60 days. High proportions (79–90%) of sterile rainbow trout were obtained with greater doses of the steroid (25, 50 and 100 mg/kg diet) fed for 120 days. A paradoxical feminizing effect at high doses of MT (50 and 100 mg/kg diet) was observed irrespective of the length of the treatment. No dose-related mortality during the treatments was observed.     

Magnifying superlens in the visible frequency range

We demonstrate a magnifying superlens that can be integrated into a conventional far-field optical microscope. Our design is based on a multilayer photonic metamaterial consisting of alternating layers of positive and negative refractive index, as originally proposed by Narimanov and Engheta. We achieved a resolution on the order of 70 nanometers. The use of such a magnifying superlens should find numerous applications in imaging.