Simple sequence repeats as useful resources to study transcribed genes of cotton

Microsatellites or Simple Sequence Repeats(SSRs) are informative molecular genetic markers in many crop species. SSRs are PCR-based, highly polymorphic, abundant, widely distributed throughout the genome and inherited in a co-dominant manner in most cases. Here we describe the presence of SSRs in cDNAs of cotton. Thirty one SSR primer pairs of 220 (∼14%) tested led to PCR amplification of discrete fragments using cotton leaf cDNA as template. Sequence analysis showed 25% of 24randomly selected cDNA clones amplified with different SSR primer pairs contained repeat motifs. We further showed that sequences from the SSR-containing cDNAs were conserved across G. barbadense and G. hirsutum, revealing the importance of the SSR markers for comparative mapping of transcribed genes. Data mining for plant SSR-ESTs from the publicly available databases identified SSRs motifs in many plant species,including cotton, in a range of 1.1 to4.8% of the submitted ESTs for a given species. This revised version was published online in August 2006 with corrections to the Cover Date.     

Chemical Investigation of Water Resources Around the Yatagan Thermal Power Plant of Turkey

In this work, trace metals such as Hg, Pb, As, Cd, Cu, Fe, Mn and Zn in underground water samples obtained from three wells, an ash-pond and drinking water located near the Yatagan Thermal Power Plant were measured. As, Hg, Cu and Zn contents of the underground water were lower than those reported in the EEC (European Economic Community) and WHO (World Health Organization) guidelines. In contrast, the levels of Fe, Pb, Cd and Mn in some groundwater samples were higher than EEC and WHO guideline values. The trace metal concentrations in coal ash-pond water were observed to be lower than water quality standards with the exception of Pb. The obtained results indicated that the trace metal concentration in the sampled drinking water site did not exceed WHO limits.     

Molecular Characterization of Some Apple Accessions Using DNA Markers Associated with Fruit Skin and Flesh Colour

Apple (Malus domestica Borkh.) is one of the most widely grown and economically important fruit crops in the world. Skin colour is one of the most important criteria for marketing of apple fruits. Thus, improving fruit colouring is one of the main objectives of apple breeding programs. Even though environmental conditions may affect the colouring of apple, understanding the genetic basis of colouring is important to accelerate the breeding process. In recent years, molecular biology and genetic studies were conducted to explore the molecular basis of colouring in apple. Many genes responsible for the anthocyanin synthesis were identified and their associations with colouring of apple fruit flesh and/or skin were demonstrated. In addition, some DNA markers associated with fruit flesh and skin colour have been developed for screening apple cultivars and hybrids. In this study, 90 apple accessions of international, national, and local decents were selected from the genetic resources collection. Genomic DNA was isolated from leaf tissue of all acession and screened with four different DNA markers associated with fruit flesh and skin colour. Apple accessions in the collection were characterized and their genotypes and genetic potential for fruit colouration were determined by different DNA markers. Additionally, the use of these DNA markers in different apple accessions, well-characterized cultivars and uncharacterized local and national types were investigated.

     

Effect of different housing systems on fattening performance,slaughter and carcass characteristics of Akkeçi (White Goat) male kids

The aim of this study was to determine the fattening performance and the slaughter and carcass characteristics of Akkeçi (Saanen × Kilis (B₁) crossbred) male kids raised in individual crates (IC) or in group pen housing (GP). In both GP and IC groups, total 13 heads of male kids, whose initial body weights were 21.43 ± 1.03 kg and 20.61 ± 0.98 kg, respectively, evaluated for their fattening performances. After 56 days of the fattening period, the final body weights and average daily weight gains of the GP and IC kids were recorded as 30.84 ± 0.82 kg and 25.84 ± 0.76 kg; 182.42 ± 14.77 g and 92.09 ± 13.76 g, respectively (P < 0.001). Adrenal gland weights of the GP and IC groups were similar as 1.66 ± 0.25 g and 1.77 ± 0.22 g, respectively. Although, the carcass conformation of kids was similar between groups, there were significant differences between GP and IC groups for some slaughter and carcass characteristics. In general, although housing kids reared in individual crates provides opportunity to individually feed and monitor a kid, the results obtained from the individual crates in the present study were not satisfactorily from the ethological and production points of view.     

Obtaining medical textiles including microcapsules of the ozonated vegetable oils

In this paper, it was aimed to obtain disposable medical textiles having antibacterial and wound healing properties, as well as biological adaption. For this purpose, the St. John’s Wort oil and flax seed oil were ozonated, and the oils were capsulated with arabic gum. The produced ozonated oils were characterized through FTIR and TGA analyses, as well as the properties of antibacterial, wound healing, and biological adaption were investigated. The produced microcapsules were examined via optical microscope and FTIR. The characterized microcapsules of the ozonated oils were applied to the textiles with padding method. After the applications, the fabrics were researched with SEM and FTIR analyses; in addition the antibacterial and wound healing properties and biological adaption of the textiles were also investigated. The results showed that the St. John’s Wort oil and flax seed oil were successfully ozonated and microcapsulated. The microcapsules of the oils could be applied to the fabric samples with the determined application recipe. The ozonated oils and the fabric samples applied microcapsules of the ozonated oils gained high antibacterial and wound healing property. In addition, the fabric samples were produced as having biological adaptation.     

Removal of Phosphate from Waste Waters by Adsorption

In this study, the adsorption of phosphate on gas concrete from aqueous solutions has been studied as functions of temperature, mixing rates and suspension pH. Over 99% of phosphate removal was found. The chemical composition of the gas concrete has been defined by X-ray analysis. Experimental data was fitted to the Langmuir equation in order to Langmuir coefficients. After calculating Langmuir coefficients, adsorption free energy (Δ G ⁰ _ads.) has been determined. In order to gather information about adsorption mechanism, electrophoretic mobilites of particles were measured at various pHs by using Zeta meter 3.0+. It has been found that the adsorption is driven by the interactions between the ionizations of CaO and Al₂O₃ and the formation of AlPO₄. According to the BET (N₂) measurements, the specific surface area of gas concrete was found as 22 m²g^-1. The surface area after adsorption has been found as 17 m²g^-1. The surface area covered by adsorbate has been found as 5.23 m²g^-1 by usinga_s = n^s _m. a_m. N_A. These two areas determined by BET and Langmuir model were close to each other (BET: 22 m²g^-1–17 m²g^-1).     

Effects of dietary selenium of organic form against lead toxicity on the antioxidant system in Cyprinus carpio

In this study was evaluated potential protective effect of organic selenium (Se) on heavy metal stress induced by lead (Pb) in Cyprinus carpio. For this reason, C. carpio was exposed to sublethal concentration of Pb (1.5 mg/L Pb(NO₃)₂) for 14 days. The fish were fed a basal (control; measured 0.55 mg/kg Se) diet or a basal diet supplemented with 2.50 mg/kg (measured 2.92 mg/kg Se) organic Se (Sel-Plex^®) during the experiment period. The variations in glutathione peroxidase (GSH-Px), glutathione S-transferase (GST) activities, and levels of reduced glutathione (GSH) with malondialdehyde (MDA) in liver and brain tissues of C. carpio were investigated in experimental groups. GSH levels in liver and brain tissues were significantly decreased by exposure to Pb. GST activity was significantly increased (p < 0.05) in liver tissue, but decreased in brain of treated fish by exposure to Pb. Also, GSH-Px activity was significantly increased in liver tissue, but decreased in brain of Pb-treated fish. Levels of MDA were increased in liver and brain of Pb-treated fish. The organic Se treatment for Pb-intoxicated animals improved activities of GSH-Px, GST and levels of MDA within normal limits. Supplemented Se could be able to improve Pb-induced oxidative stress by decreasing lipid peroxidation and regulating antioxidant defense system in tissues.     

Critical nutrient concentrations and antagonistic and synergistic relationships among the nutrients of NFT‐grown young tomato plants

Critical concentrations of nitrogen (N), phosphorus (P), potassium (K), calcium (Ca), magnesium (Mg), iron (Fe), zinc (Zn), and manganese (Mn) with respect to dry matter yield end antagonistic and synergistic relationships among these nutrients were studied in which tomato (Lycopersicon esculentum L.) was grown in recirculating nutrient solution (NFT). Increments of nutrient elements in the nutrient solution increased the proportional rate of the corresponding nutrient elements. Increasing levels of N negatively correlated with plant P and positively correlated with Ca, Fe, and Zn. Iron and Mn contents of the plants were increased and N, K, Ca, and Mg were decreased as a function of P applied. Increases in K in the nutrient solution caused increases in the concentrations of K, N, P, and Zn, and decreases in the concentration of Ca and Fe. Applied Ca increased the concentrations of Ca and N, and decreased the concentrations of P, Mg, Fe, Zn, and Mn. Potassium, Ca, and Fe contents of the plants were decreased and Zn increased, while N, P, and Mn were not affected by the increasing levels of external Mg. Iron suppressed the plant Mg, Zn, and Mn contents. Synergism between Zn and Fe was seen, while P, K, Ca, Mg, and Mn contents were not affected by Zn levels. Potassium, Ca, Mg, and Fe were not responsive to applied Mn, however, N and P contents of the plants were decreased at the highest levels of Mn.