Population structure of Phytophthora infestans in Turkey reveals expansion and spread of dominant clonal lineages and virulence

Late blight, caused by the oomycete Phytophthora infestans, is considered the most important and destructive disease of potato in Turkey. In this study, characterization of 367 isolates of P. infestans obtained from the potato-growing areas of the country was carried out to evaluate the pathogen population structure over the 2017–2019 production seasons. The isolates were characterized by numerous features including mating type, in vitro mefenoxam sensitivity, simple-sequence repeat (SSR) markers, and virulence against a set of potato differential lines. Most isolates were A2 mating type (353 isolates). Also, 68% of isolates were resistant to mefenoxam; the remainder were intermediate in their sensitivity and there were no sensitive isolates. SSR-based genotypic analysis of P. infestans populations showed a low genetic diversity. The 13_A2 clonal lineage predominated with a frequency of 92.1%, followed by 34_A1 (3.3%) and 37_A2 (2.7%). Genotypes 34_A1 and 37_A2 were detected only in 2019. This is the first report of 34_A1 and 37_A2 clonal lineages causing late blight disease of potato in Turkey. The most abundant virulence type was one overcoming resistance genes R1, R2, R3, R4, R6, R7, R10, and R11. These results emphasized that the migration of individuals and the asexual generation of subclonal differences were the main factors driving the population structure of P. infestans in Turkey.     

Effects of Irrigation Frequency on Yield and Quality Parameters in Apple c.v. ‘Gala,Galaxy’

This study was conducted in 2007 and 2008 in order to determine the effects of irrigation frequency on the yield and quality parameters of dwarf trees of the apple cultivar ‘Gala, Galaxy’ in the first and second year of cultivation. Irrigation water was applied at 3?, 5?, 7?, and 10-day intervals as much as the amount of water consumed from the field capacity. Statistical analysis revealed that the effects of irrigation frequency on yield were significant. Since the trees used in the experiment showed mainly vegetative growth, the effects of irrigation frequency on the fruit quality characteristics varied. Irrigation water amount was applied as 355.7–446.5 mm and 359.2–538.9 mm to the experimental treatments in 2007 and 2008, respectively. The evapotranspiration measured was in the range 400.7–491.5 mm in 2007 but in the range 440.2–600.5 mm in 2008, while the yields in the same years ranged from 1.54 to 2.84 t ha^?1 and from 2.61 to 6.06 t ha^?1. Water use efficiency varied between 2.40 and 4.80 t ha^?1mm^?1 in the first year of the experiment but between 3.45 and 7.08 t ha^?1mm^?1 in the second year. The I₂ treatment, in which the highest yield and water use efficiency were recorded in both years of the experiment under the experimental conditions, was determined as the irrigation scheduling.     

Determination of Energy Use Efficiency and Greenhouse Gas (GHG) Emissions of Pistachio (Pistacia vera L.) Production in Adıyaman Province

The purpose of this research is to perform the energy use efficiency and greenhouse gas (GHG) emissions of pistachio production. This research was performed for 2016 and 2017 production season in Ad?yaman province of Turkey in dry conditions in 2017. The data supplied from research were collected from 152 different farms by face to face surveys with simple random sampling method. The agricultural input energies and output energies used in pistachio production were computed to determine the energy use efficiency. According to the research findings, the energy inputs in pistachio production were computed respectively as 4561.11?MJ ha^?1 (35.50%) diesel fuel energy, 3206.24?MJ ha^?1 (24.96%) chemical fertilizers energy, 2420.93?MJ ha^?1 (18.84%) machinery energy, 1020.06?MJ ha^?1 (7.94%) human labour energy, 715.69?MJ ha^?1 (5.57%) animal labour energy, 656.95?MJ ha^?1 (5.11%) farmyard manure energy and 266.16?MJ ha^?1 (2.07%) chemicals energy. Total input energy was computed as 12,847.14?MJ ha^?1. Energy values of pistachio yield were computed as 15,008.65?MJ ha^?1. Energy use efficiency, specific energy, energy productivity and net energy computations were computed respectively as 1.17, 22.32?MJ kg^?1, 0.04?kg MJ^?1 and 2161.51?MJ ha^?1. The consumed total energy input in pistachio production can be classified as 49.01% direct, 50.99% indirect, 18.62% renewable and 81.38% non-renewable. Total GHG emission was computed as 1123.72?kg CO_2?eqha^?1 for pistachio production with the greatest portions for human labour (32.42%). The human labour followed up chemical fertilizers usage (23.21%), diesel fuel consumption (19.89%), machinery usage (15.30%), farmyard manure usage (5.65%), chemicals usage (3.25%) and animal labour usage (0.27%), respectively. Additionally, GHG ratio value was computed as 1.95 kgCO_2?eqkg^?1 in pistachio production.

     

Molecular Characterization of Some Apple Accessions Using DNA Markers Associated with Fruit Skin and Flesh Colour

Apple (Malus domestica Borkh.) is one of the most widely grown and economically important fruit crops in the world. Skin colour is one of the most important criteria for marketing of apple fruits. Thus, improving fruit colouring is one of the main objectives of apple breeding programs. Even though environmental conditions may affect the colouring of apple, understanding the genetic basis of colouring is important to accelerate the breeding process. In recent years, molecular biology and genetic studies were conducted to explore the molecular basis of colouring in apple. Many genes responsible for the anthocyanin synthesis were identified and their associations with colouring of apple fruit flesh and/or skin were demonstrated. In addition, some DNA markers associated with fruit flesh and skin colour have been developed for screening apple cultivars and hybrids. In this study, 90 apple accessions of international, national, and local decents were selected from the genetic resources collection. Genomic DNA was isolated from leaf tissue of all acession and screened with four different DNA markers associated with fruit flesh and skin colour. Apple accessions in the collection were characterized and their genotypes and genetic potential for fruit colouration were determined by different DNA markers. Additionally, the use of these DNA markers in different apple accessions, well-characterized cultivars and uncharacterized local and national types were investigated.

     

Determination of Energy Use Efficiency of some Apple (<Emphasis Type="Italic">Malus x domestica</Emphasis>) Production in Turkey: a Case Study of Eğirdir Region

This research aims to make an analysis of energy use efficiency of apple (‘Starkrimson Delicious’ and ‘Golden Delicious’) production in E?irdir region of Turkey, during the production season of 2012. Production data this research was collected in 2013. In order to determine the energy use efficiency of apple, various surveys have been conducted in 71 apple farms, selected through Simple Random Sampling method, located in E?irdir region of Turkey. The data have been collected through face to face questionnaires and first hand observations. The energy input and output values in apple production have been calculated as 34,703.63 MJ ha^?1 and 95,034 MJ ha^?1, respectively. Energy inputs consist of diesel fuel energy by 29.04?%, chemical fertilizers energy by 24.28?%, machinery energy by 15.70?%, chemical energy by 9.84?%, human labor energy by 8.54?%, electricity energy by 5.63?%, irrigation energy by 3.97?%, farmyard manure energy by 2.88?% and lime energy by 0.12?%. Energy use efficiency, energy productivity, specific energy and net energy in apple production have been calculated as 2.74, 1.16 kg MJ^?1, 0.86 MJ kg^?1 and 60,330.36 MJ ha^?1, respectively. The total energy input consumed has been classified as direct, by 47.17?%, indirect, by 52.83?%, renewable, by 15.38?% and non-renewable, by 74.62?%.     

Determination of Energy Input-Output Analysis in Plum (<Emphasis Type="Italic">Prunus domestica</Emphasis> L.) Production

The aim of this research is to compose the energy input-output analysis of plum in Nevsehir province in Turkey. This research was conducted at the plum cultivating facilities during the 2015–2016 production seasons in Nevsehir province of Central Anatolian Region in Turkey. The agricultural input energies and output energies used in plum cultivation were calculated to determine the energy input-output analysis. According to the research findings, the energy inputs in plum cultivation were calculated respectively 3920?MJ ha^?1 (44.99%) chemical fertilizers energy, 1618.91?MJ ha^?1 (18.58%) diesel fuel energy, 1125.85?MJ ha^?1 (12.92%) chemicals energy, 1069.20?MJ ha^?1 (12.27%) machinery energy, 723.24?MJ ha^?1 (8.30%) human labour energy and 255?MJ ha^?1 (2.93%) irrigation water energy. Production output plum yield were calculated as 12,112.50?MJ ha^?1. The energy output/input ratio, specific energy, energy usage efficiency and net energy calculations were calculated respectively as 1.39, 1.37?MJ kg^?1, 0.73?kg MJ^?1 and 3400.30?MJ ha^?1.     

Cold storage of oil rose (Rosa damascena Mill.) flowers

Oil rose flowers were stored at 0 °C in four different packaging materials [plastic box + stretch film (PB + SF), Xtend^®, Smartbag^® and polyethylene (PE)] for 60 days. During storage, weight loss, O₂ and CO₂ concentrations in the packages, petal color and sensorial attributes were investigated besides essential oil content and composition. Storage duration and packages had significant (p < 0.01) effects on weight loss. At the end of storage, the lowest weight loss was in PE package (1.696%) whereas the highest weight loss was in Xtend^® (10.081%). The essential oil content was significantly (p < 0.01) affected by storage duration and packages. In addition, the essential oil contents obtained from all packages for a storage period of 10 days and the essential oil contents obtained from unstored (control) petals were included in the same group. At the end of storage, the essential oil contents decreased by 91.3, 57.7, 80.0 and 64.3% in PB + SF, Xtend^®, Smartbag^® and PE packages, respectively as compared to control. In addition, storage duration and package types significantly (p < 0.01) affected petal color, O₂ and CO₂ concentrations in the packages and sensorial scores. The concentration of citronellol, a main component of rose oil, increased in all packages during storage of 10 days in comparison to the control group while it varied in other storage durations and package types. However, nerol and geraniol were lower than the control group during storage while concentrations of nonadecane, heneicosane and eicosane were higher. In conclusion, loss of oil yield and quality, due to various reasons and particularly due to fermentation in oil rose from the harvest of petals to their distillation, can be minimized with storage of petals in all package types for up to 10 days.     

Effects of exogenously applied salicylic acid on the induction of multiple stress tolerance and mineral nutrition in maize (Zea mays L.)

Abstract

It has been proposed that salicylic acid (SA) acts as an endogenous signal molecule responsible for inducing environmental stress tolerance in plants. In this study, the effects of seed soaked (1.0 mM for 24 h) and soil incorporated (0.1 mM and 0.5 mM) salicylic acid (SA) supply on growth and mineral concentrations of maize (Zea mays L., Hamidiye F₁) grown under either salt, boron toxicity or drought-stressed conditions were investigated. Exogenously applied SA either with seed soaked (SS) or soil incorporated (SI) increased plant growth significantly in all the stresses conditions. Salicylic acid inhibited Na and Cl accumulation in saline conditions, and 0.5 mM of soil incorporated SA decreased B significantly in boron toxicity treatment. Except in drought condition, SA treatments stimulated N accumulation in plants. And P, K, Mg and Mn concentrations of SA received plants were increased in the stress conditions. These results suggest that SA regulates the response of plants to the environmental stresses and could be used as a plant growth regulator to improve plant growth and stimulate mineral nutrient concentrations under stress conditions.     

Characteristics of some almond kernel and oils

The proximate properties, the fatty acid and mineral contents of different almond kernel varieties were determined. The crude protein contents of kernels ranged between 12.7% (guara) and 16.3% (cristomorto). The oil yields from these kernels were established between 48.8% (cristomorto) and 55.7% (ferragnes). The acidity value of oils were found between 1.389 and 3.559%. In addition, peroxide values were established between 7.586 (nonpareil) and 15.590 mequiv./kg (cristomorto). The major fatty acids of almond kernel oils were oleic (72.5–79.9%), linoleic (13.5–19.8%) and palmitic acids (5.9–6.7%). The predominant mineral in most kernel was potassium (13.1–15.1 mg/100 g). The mineral contents of the kernels were established as 7.94–9.38 mg/100 g potassium, 2.9–4.0 mg/100 g magnesium and 1.84–2.94 mg/100 g calcium. From the results of the present study, it can be concluded that the kernels of almond varieties are being potential sources of valuable oil which might be used for edible and other industrial applications.     

Inter and intra-species Inter Simple Sequence Repeat (ISSR) variations in the genus Cicer

Intra and inter-species ISSR variation and use of ISSR markers in determination of genetic relationship were investigated in an accession collection representing twoperennial and six annual Cicerspecies. Screening of Ciceraccessions with SSR primers revealed highly reproducible amplicon profiles with relatively high multiplex ratios. Many of the primers generated amplicon profiles with which not only the differences among species can readily be identified, but also polymorphisms within species could be detected more efficiently. PCR products at 150 gel positions detected using six SSR primers in Cicer accessions were treated as dominant DNA markers and utilized to compute the distances among accessions and species. Cluster analysis of accessions and species revealed groupings that corroborate our previous studies of relationships based on allozyme and AFLP analysis. Consistent with the AFLP analysis carried out in the same accession collection, ISSR-based groupings indicated that perennial C. incisumis genetically close to the annuals of the second crossability group (C. pinnatifidum,C. bijugum, C. judaicum) while C. reticulatum is the closest wild species to the cultivated chickpea. ISSR-based variation estimates were relatively higher when compared to previous estimates computed from RAPD and AFLP data. Technically, ISSR analysis combines the PCR-based targeting of microsatellite-associated polymorphisms with no prior sequence requirement and stringent PCR conditions. Similarly, when compared to AFLP analysis, it is less technically demanding allowing to survey polymorphic loci in the genome. Thus, ISSR-PCR technology is a reliable, fast, and cost-effective marker system that can be used to study genetic variation and genetic relationships in the genusCicer. This revised version was published online in July 2006 with corrections to the Cover Date.