A comparative analysis of habitat quality between artificial and natural creeks in the Mediterranean killifish Aphanius fasciatus: Implications for conservation

1. In transitional water ecosystems, habitat loss is one of the major threats to fish biodiversity. This is particularly true in the case of temperate salt marshes. Good quality artificial novel habitats may compensate for the loss of natural habitats, acting as a refuge for fish populations.
2. The aim of this study was to use coloured ornamental traits exhibited by the males of a small lagoon-resident fish, the Mediterranean killifish Aphanius fasciatus (Valenciennes, 1821), to assess habitat quality in both the natural and artificial creeks of the Venice lagoon.
3. The conspicuousness of two secondary sexual traits, the yellow/orange caudal fin pigmentation and the contrast between white and dark vertical bars on body sides, proved to be greater in artificial habitats compared to natural salt marshes, highlighting the refuge function of artificial creeks.
4. The use of secondary sexual traits could be extended to other fish species and to other aquatic habitats as a non-invasive approach. This would allow the identification of good quality habitats in the context of fish population management and conservation.

     

Glorious past, uncertain present, bad future? Assessing effects of land-use changes on habitat suitability for a threatened farmland bird species

Land-use changes have strong impacts on biological communities. Among them, land abandonment is threatening a large number of conservation-concern species associated with semi-natural habitats shaped by ‘traditional’ farming. We focused on the red-backed shrike as a model for investigating the effect of land abandonment on a threatened bird species, and used historical data to model dynamic scenarios. We explored variations in habitat suitability from the 1950s to the present and predicted possible future variations. After investigating local habitat preferences of the species, we formulated a spatially explicit model of habitat suitability for shrikes according to current land-use types; then, we evaluated past habitat suitability, by applying the model to three known past scenarios, and simulated the habitat changes after land abandonment. By combining a habitat-association approach with past and future land use scenarios, we assessed and predicted the effects of habitat changes caused by abandonment. Shrike occurrence was favoured by the cover of four types of grassland and of shrubland with trees, and negatively affected by broadleaved woodlands. The current average habitat suitability is less than half of what it was in the 1950s. Future predictions in a complete abandonment scenario suggest that important decrease could be expected 10 or 20 years after abandonment, and that after 30 years the red-backed shrike would be completely extinct. Alternative scenarios involving partial abandonment suggested that subsidy policies may mitigate the effects of abandonment. Knowing land-use dynamics allowed the exploration of effects of land-use changes and corroborated the importance of low-intensity farming for conservation.     

A size‐age model based on bootstrapping and Bayesian approaches to assess population dynamics of Anguilla anguilla L. in semi‐closed lagoons

A size‐age modelling technique is presented for assessing the vital rates, stock and recruitment of eel populations in semi‐closed lagoons with fully monitored migration of silver eels. Data for yellow and silver European eels (Anguilla anguilla L.) were obtained in 2011 from the Comacchio lagoon (Italy). The analysis was performed in three steps: (i) correction of yellow eel data, which are affected by the fyke nets selectivity during samplings, (ii) estimation of survival curve, stock, recruitment and metamorphosis rates of the population (calibration using data from 2011) and (iii) validation of the model using the observed amount of silver eel migrating population of the next year. A bootstrap procedure was used to assess the level of uncertainty for each parameter using the 95% intervals of the highest posterior density distribution HPDD (Bayesian approach). The measured abundance of silver eels was 0.56 ind·ha^?1, while the yellow eel abundance and recruitment were estimated by the model for 2011 at 8.77 ind·ha^?1 and 5.99 ind. ha^?1 respectively. The model performance during validation was satisfactory as the observed total mass of migrating population of 2012 (3777 kg) was inside the 95% HPDD intervals (3197–3839 kg) of model's predictions. The estimated stocks and recruitment were at least ten times lower from the respective estimations of previous studies of 1989 highlighting the crucial conditions of the population. The proposed modelling approach can provide significant information about eel population conditions, facilitating the evaluation of a range of management options in the context of eel conservation plans.     

A preliminary investigation of the relationship between the “moment of resistance” of the canine spine, and the frequency of traumatic vertebral lesions at different spinal levels

The aims of this work were to re-evaluate the moments of resistance (MoRs) of the vertebral column proposed by Slijper (1946) in the dog and to study the relationship between the MoRs and the frequency distribution of vertebral traumas in the same species. The spine (C2-L7) of four dogs was measured to obtain MoRs and subsequently scanned with a dual-energy X-ray absorptiometer (DXA). These findings were then analysed retrospectively the frequency distribution of canine vertebral fractures and luxations, diagnosed radiographically at a referral practice. The highest percentage of vertebral injuries affected the T9-L7 tract. This study confirmed that this segment was characterized by a rising trend of the MoR curves and presumably bore the major bending forces. The significant correlation between T9-L1 MoRs and DXA values supports the Slijper’s hypothesis suggesting the posterior thoracic region as the weakest segment of the body-axis.     

Genetic parameters estimation in an Italian horse native breed to support the conversion from agricultural uses to riding purposes

Horses are nowadays mainly used for sport and leisure purposes, and several local breeds, traditionally used in agriculture, are exposed to the risk of extinction. The long-term survival of local horse breeds depends on strategies to both monitor their genetic diversity and to find their sustainable role in the equine market. Thus, several local horse breeds need to adapt their breeding objective to allow a modernization process. The Bardigiano is an example of such horse breeds; we, therefore, studied the existing evaluation protocol from a genetic standpoint to assess the protocol's suitability to convert the Bardigiano from an agricultural to a riding horse. To this end, we estimated genetic parameters for four conformation measurements, ten grading traits and 23 linear traits. For conformation measurements, the heritabilities ranged from 0.31 for cannon bone circumference to 0.63 for height at withers. For conformation and attitude grading traits, the highest heritability (0.34) was estimated for development and the lowest (0.09) for gaits. The heritabilities for linear traits ranged from 0.05 for the leg straightness to 0.32 for the coat colour. Genetic correlations between linear traits and corresponding grading traits varied considerably, ranging from −0.42 to 0.98. This study showed that the current evaluation protocol in the Bardigiano horse is appropriate for genetic evaluation. Genetic parameters estimation can, in turn, be used to develop novel breeding values to help this conversion. Our study paves the way to optimize the Bardigiano horse breeding programme, and it may help several other local horse breeds experiencing similar issues.     

Genetic variability of the prion protein gene (PRNP) in wild ruminants from Italy and Scotland

The genetics of the prion protein gene (PRNP) play a crucial role in determining the relative susceptibility to transmissible spongiform encephalopathies (TSEs) in several mammalian species. To determine the PRNP gene variability in European red deer (Cervus elaphus), roe deer (Capreolus capreolus) and chamois (Rupicapra rupicapra), the PRNP open reading frame from 715 samples was analysed to reveal a total of ten single nucleotide polymorphisms (SNPs). In red deer, SNPs were found in codons 15, 21, 59, 78, 79, 98, 136, 168 and 226. These polymorphisms give rise to 12 haplotypes, and one of which is identical to the PRNP of American wapiti (Rocky Mountain elk, Cervus elaphus nelsoni). One silent mutation at codon 119 was detected in chamois and no SNPs were found in roe deer. This analysis confirmed that European wild ruminants have a PRNP genetic background that is compatible with TSE susceptibility, including chronic wasting disease.     

A field study of the impact of different irrigation practices on herbicide leaching

Agricultural practices, such as subsurface drainage, irrigation and tillage, may significantly affect pesticide leaching and, consequently, the risk of groundwater contamination. The aim of the present study was to investigate the impact of different irrigation systems on herbicide leaching to shallow groundwater through direct monitoring at the field scale in northern Italy over a 3-year period. Concentrations of the herbicide terbuthylazine (TBA) and its metabolite desethylterbuthylazine (DES) were monitored on 10 farms cropped with maize and irrigated by sprinkler, basin and border systems. Considering the results grouped according to the different irrigation systems, the mean TBA and DES concentrations was lower than the arbitrary non-health based legal limit of 0.1 μg/L using sprinkler and border systems, while it was 0.19 and 0.30 μg/L respectively for TBA and DES using basin systems.However, since many factors other than the irrigation systems can contribute to pesticide leaching and in a field study it is impossible to discriminate between all the different variables, the concentrations of both compounds were simulated with and without irrigation using the model MACRO 5.1 in order to gain a deeper understanding of the role of irrigation on leaching. First, the groundwater table depth, which was measured daily in all fields, was used to calibrate the model and thus achieve a good soil hydrology calibration. To assess the performance of the model the root mean squared error (RMSE) was used. RMSE ranged from 0.2 to 0.5 m, showing that a satisfactory hydrology calibration was obtained. Afterward, the solutes were modelled and the results showed that under non-irrigated conditions, concentrations of both compounds would be very low. These findings validate the hypothesis that careful selection of agricultural practices, such as the type of irrigation, can reduce pesticide leaching.     

基于方格网法的树冠体积测算方法

提出了一种基于方格网法测算树冠体积的方法。研究利用免棱镜全站仪获取树冠点云数据,建立树冠表面特征点的坐标方格网,根据方格网法计算土方量的原理来求算树冠体积,通过传统经典模型人工方法、三维激光量测法与本文算法,分别计算实验区域研究对象的体积,将结果进行对比分析,本研究提出的算法平均相对误差为4.13%,平均准确度为95.97%,且在置信度0.05下树冠体积的计算值与实测值之间的差异性为不显著,结果完全满足计算精度,其计算耗时只有传统人工量测法的1/3,成本为三维激光扫描的2%,降低了成本且提高了效率。