The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism

Diatoms are unicellular algae with plastids acquired by secondary endosymbiosis. They are responsible for approximately 20% of global carbon fixation. We report the 34 million-base pair draft nuclear genome of the marine diatom Thalassiosira pseudonana and its 129 thousand-base pair plastid and 44 thousand-base pair mitochondrial genomes. Sequence and optical restriction mapping revealed 24 diploid nuclear chromosomes. We identified novel genes for silicic acid transport and formation of silica-based cell walls, high-affinity iron uptake, biosynthetic enzymes for several types of polyunsaturated fatty acids, use of a range of nitrogenous compounds, and a complete urea cycle, all attributes that allow diatoms to prosper in aquatic environments.     

Occurrence and molecular identification of an invasive rice strain of fall armyworm Spodoptera frugiperda (Lepidoptera: Noctuidae) from Sindh,Pakistan, using mitochondrial cytochrome c oxidase I gene sequences

Journal of Plant Diseases and Protection - The fall armyworm (FAW), an invasive pest of maize, is an emerging threat in Southern Asia after America and Europe. Recently, this notorious pest has...     

Effect of harvesting time on nut quality of pistachio (Pistacia vera L.) cultivars

The appropriate time of harvest is one of the most important factors affecting the quality of pistachio. Cultivars ‘Ahmad-Aghaii’, ‘Kaleh-Ghoochi’, ‘Ohadi’ and ‘Badami-Zarand’ were evaluated for qualitative indices of nut over a period of four years from 2001 to 2004. Nut samples were collected during eight successive weeks from 23 August to 11 October. Splitting, early splitting, hull cracking and hulling percentage continually increased toward the last harvest week while non-splitting, immaturity, number of nuts per ounce and moisture content decreased during the harvest weeks. The increment of splitting and the number of nuts per ounce was not significant from 20 September to the last week of harvest. Early splitting, hull cracking and aflatoxin contamination of kernel progressively increased from 13 September. Total crude fat and sugar contents showed a peak in the middle of September. The concentration of aflatoxins prior or at maturity stage of selected cultivars was lower than the critical level. In general, the appropriate time of harvest for the cultivars studied is the middle of September to avoid contamination of nuts to aflatoxin and to ensure the nut quality. This study emphasizes different quality indices for determining the optimum harvest time of pistachio crop.     

First detection and molecular characterization of avian polyomavirus in young parrots in Pakistan

Veterinary Research Communications - Avian polyomavirus (APV) infection, also called as budgerigar fledgling disease (BFD) causes various health problems in many psittacine species which may cause...     

Interactive Effects of High Boron and NaCl Stresses on Subcellular Localization of Chloride and Boron in Wheat Leaves

Salinity and boron (B) toxicity often occur simultaneously and may have interactive effects on plant responses. This study aims at further investigating long‐term effects of salinity, B toxicity and their combination on wheat plants. Plants grown in hydroponics were treated with 2.5 μm H₃BO₃ (control), 75 mm NaCl, 200 μm H₃BO₃ or 75 mm NaCl + 200 μm H₃BO₃ and were analysed on a subcellular level 6 weeks after germination. Shoot fresh and dry weight (DW), water content, transpiration rate and osmolality were reduced, while Na⁺ and Cl^? concentrations increased under salinity stress. However, Cl^? was reduced in all compartments by an additional application of B toxicity. At adequate B supply, NaCl increased apoplastic and symplastic soluble B concentrations, whereas the total B content remained unchanged. At high B level, however, soluble and total B was reduced by additional salt stress. Despite this antagonistic effect of a combined salt and B toxicity stress on Cl^? and B concentrations, an additive effect was observed regarding shoot fresh weight reduction. Our results confirm an alleviating effect of the combined stresses on toxic ion concentrations, which did not prevent additive growth reductions.     

Effect of short-term supply of farmyard manure on maize growth and soil parameters in pot culture

Farmyard manure (FYM) improves various soil parameters and to a large extent, the availability of water and nutrient to crops when it is applied to the soil. This study aims to further investigate the short-term effects of different levels of FYM on maize plants and soil parameters. Maize plants grown in pot culture were treated with no FYM (control), recommended NPK (inorganic fertilizers), and FYM at 2, 4, 6, 8, and 10 t ha^?1 along with recommended NPK, and the cultures were analyzed 8 weeks after germination. Soil bulk density and soil pH decreased with the increasing levels of FYM, whereas soil porosity, soil organic matter (SOM), soil water content, plant height, root and shoot yield, and NPK uptake of maize were increased compared with the control or recommended NPK, respectively. The present results indicate that short-term application of higher FYM levels improves soil properties. Furthermore, the application of FYM at only higher rates significantly increases the nutrient uptake of maize plants due to improved soil properties. The supply of different amounts of nutrients increases biomass and nutrient uptake in plants.     

Comparison of various potting media for their influence on nutrients supply,germination, and growth of muskmelon (cucumis melo L.) seedlings

Peat moss is used as potting mix for growing muskmelon (Cucumis melo L.) seedlings. However, it is not economical for most of the farmers in developing countries. The objectives of the present study were to compare various sources of composts as substitutes for peat moss, evaluate their physicochemical properties, and their effects on germination and growth of muskmelon (Cucumis melo L.) seedlings under greenhouse conditions. The treatments included pure peat moss (control), and composts prepared from guar (Cyammopsis tetragonoloba L.), jantar (Sesbania aculeate L.), and wheat (Triticum aestivum L) straw, at three air-filled porosity (AFP) levels (10, 15, and 20%) and rice (Oryza sativa) hulls at 10% AFP level. The second factor was the addition and devoid of nitrogen (N), phosphorus (P), and potassium (K) fertilizers. The addition of fertilizers in all potting media at 10% AFP level showed a small increase in total nitrogen, extractable phosphorus, and potassium. In the guar and jantar compost at 10% AFP, the values of total N (92.43 and 85.32%), extractable P (68.13 and 76.65%), and K (63.33 and 49%) were higher than in peat moss. It is concluded that composts of guar, jantar, wheat straw, and rice hulls at 10% AFP level can be used as a substitute of peat moss for growing muskmelon seedlings, but the addition of N, P, and K fertilizers is required in wheat straw and rice hulls compost for better nutrition of muskmelon seedlings.     

Up-regulation of Endothelin-1 and Endothelin type A receptor genes expression in the heart of broiler chickens versus layer chickens

To compare Endothelin (ET) production and genes expression of ET-1 and ET_A receptor (ET_AR) between broiler and layer chickens during rearing, semi-quantitative RT-PCR and enzyme immunometric assay were performed in the heart ventricles and serum. There were gradual elevations of ET-1 and ET_AR mRNAs in the left ventricle of broiler and layer chicken groups that were mainly significant (P < 0.05) at 28, 35 and 42 days of age with compared to previous days whereas were not significant between two groups.These gradual elevations of ET-1 and ET_AR mRNAs were also observed in the right ventricle that were significant (P < 0.05) at 28, 35 and 42 days of age in broilers and 42 days of age in layers with compared to previous days. Increasing of these mRNAs in the right ventricle of broiler chickens were significantly (P < 0.05) more than layer chickens at 28, 35 and 42 days. Serum ET in broilers was significantly (P < 0.05) higher than layer chickens at 28 and 42 days of age. It is concluded that circulating ET and cardiac ET-1, ET_AR genes expression is higher in broiler chickens than in layer chickens particularly after 21 days of age. It is probably that these breed differences make broiler chickens to be more susceptible to Endothelin related-cardiomyopathies such as congestive heart failure and ascites.     

Effect of induced pyrexia on the disposition kinetics of ciprofloxacin in dogs

Ciprofloxacin was administered intravenously @ 5 mg/kg body weight to six healthy dogs. After a washout period of two weeks, fever was induced by injecting Escherichia (E) coli endotoxin. Ciprofloxacin was administered again. Blood samples were collected at various time intervals and analyzed for ciprofloxacin with HPLC. The kinetic analysis revealed the volume of distribution in healthy vs. febrile dogs as 2.12 ± 0.32 vs. 1.79 ± 0.43 L/Kg, respectively. The elimination half life was 2.23 ± 0.78 and 2.07 ± 0.74 hours in healthy and febrile dogs, respectively. Similarly, dogs under healthy and febrile conditions showed comparable total plasma clearance of 0.66 ± 0.06 and 0.60 ± 0.07 L/Kg/h, respectively. All these and other investigated kinetic parameters were statistically non significant. This study concludes that the pharmacokinetic behavior of ciprofloxacin is similar under healthy and febrile conditions. Thus, the kinetic studies of fluoroquinolones conducted in normal/healthy animals may be used to depict the pharmacokinetic parameters in diseased animals.     

Germination Ecology of Cenchrus biflorus Roxb.: Effects of Environmental Factors on Seed Germination

Better understanding related to germination and seedling emergence of plant species assists in predicting the potential distribution and provides insight for efficient management. Cenchrus biflorus Roxb. has been considered as potential forage species in arid environment due to its high nutritive values, prolific seed production, and tolerance to extreme temperature and prolonged drought conditions. A series of laboratory and greenhouse assays were conducted to determine the effect of different environmental factors, such as temperature, light, pH, salinity, osmotic potential, and seed burial depth on the germination and seedling emergence of C. biflorus. The maximum germination (95%) was recorded at 35°C/25°C, followed by 40°C/30°C; however, minimum germination was observed at 45°C/35°C (17.5%). Light significantly promoted the germination with maximum percentage (97.5%) when seeds were exposed to altering light and dark conditions (12/12 h). The osmotic potential for the 50% inhibition of C. biflorus germination was –0.4 MPa, although some seed germinated at –0.8 MPa (12.5%). Germination decreased from 97.5% to 12.5% as salinity stress increased from 0 mM to 200 mM sodium chloride (NaCl) with no germination > 200 mM. Seed germination was significantly affected by pH levels and was between 27.5% and 92.5% at 5–8 pH, respectively. No seedling emerged when seeds were placed on the soil surface; maximum seedling emergence (90%) at 2-cm burial depth and emergence decreased considerably as seeding depth increased above 2 cm. Its tolerance to drought and salinity make C. biflorus a potential candidate to be used as an alternative source during periods of forage scarcity under harsh climatic conditions, and it could possibly be used for rangeland rehabilitation purposes in arid environments.