Genetic diversity and population structure analysis of isolates of the rice false smut pathogen Ustilaginoidea virens in India

Genetic diversity assessment and population structure analysis are essential for characterization of pathogens and their isolates. Markers are essential tools for exploring genetic variation among the isolates. False smut of rice caused by Ustilaginoidea virens, formerly Villosiclava virens, is a major emerging disease of rice in India. A high level of variability is observed at the field level, but no information is available from India on genetic diversity and population structure. This is the first report of genetic diversity and population structure of U. virens from India that included 63 isolates distributed across the vast geographical area of eastern and north-eastern India (18.9 to 26.7°N and 82.6 to 94.2°E). Seventeen RAPDs and 14 SSRs were identified as polymorphic and a total of 140 alleles were detected across the populations. The average number of alleles per locus for each primer was 4.5. All the isolates were grouped into two major clusters, with partial geographical segregation that was supported by principal coordinate analysis. Mantel test suggested genetic distance within the isolates increased with increasing geographical distance. Analysis of molecular variation showed more genetic variation within populations and less among populations. This outcome will help in understanding genetic diversity of U. virens from eastern and north-eastern India and in planning effective management strategies.     

Gaseous carbon emission in relation to soil carbon fractions and microbial diversities as affected by organic amendments in tropical rice soil

The interactive effects of moisture and organic amendments (farmyard manure (FYM), crop residue (CR) and green manure (GM) (Sesbania aculeata) on gaseous carbon (C) emission, soil labile C fractions, enzymatic activities and microbial diversity in tropical, flooded rice soil were investigated. The amendments were applied on equal C basis in two moisture regimes, that is, aerobic and submergence conditions. The CO₂ production was significantly higher by 22% in aerobic than in submergence condition; on the contrary, the CH₄ production was 27% higher under submergence condition. The labile C fractions were significantly higher in GM by 26% under aerobic and 30% under submergence conditions, respectively, than control (without any kind of fertilizer or amendments). Eubacterial diversity identified by PCR-DGGE method (polymerase chain reaction coupled with denaturant gradient gel electrophoresis) was higher under GM followed by FYM, CR, and control and it is pronounced in submerged condition. GM favored the labile C accumulation and biological activities under both submergence and aerobic conditions, which makes it most active for soil–plant interactions compared to other organic amendments. Considering environmental sustainability, the use of GM is the better adoptable option, which could enhance labile C pools, microbial diversities in soil and keep soil biologically more active.     

Long-term persistence and efficacy of spinosad against Rhyzopertha dominica (Coleoptera: Bostrychidae) in wheat

A laboratory study was undertaken to determine the persistence and efficacy of spinosad against Rhyzopertha dominica (F.) in wheat stored for 9 months at 30 degrees C and 55 and 70% relative humidity. The aim was to investigate the potential of spinosad for protecting wheat from R. dominica during long-term storage in warm climates. Wheat was treated with spinosad at 0.1, 0.5 and 1 mg kg(-1) grain and sampled after 0, 1.5, 3, 4.5, 6, 7.5 and 9 months of storage for bioassays and residue analyses. Residues were estimated to have declined by 30% during 9 months of storage at 30 degrees C and there was no effect of relative humidity. Spinosad applied at 0.5 or 1 mg kg(-1) was completely effective for 9 months, with 100% adult mortality after 14 days of exposure and no live F1 adults produced. Adult mortality was <100% in some samples of wheat treated with 0.1 mg kg(-1) of spinosad, and live progeny were produced in all samples treated at this level. The results show that spinosad is likely to be an effective grain protectant against R. dominica in wheat stored in warm climates.     

施氮对香稻某些生理效应的研究

用１个非和时稻品种Ｒａｔｎａ和３个香稻品种ＨＫＲ２２８，Ｂａｓｍａｔｉ３７０及ＣＢⅡ施氮和不施氮处理对比试验结果，施氮可使稻株光合作用，呼吸作用，植株含氮量提高。但是，施氮对光合作用的促进作用未达差异显著水平。对比非香稻品种Ｒａｔｎａ和春稻品种ＨＫＲ２２８，施氮对叶片呼吸作用促进作用前者大于后者。     

Assessment of a sequential extraction procedure for fractionation of soil arsenic in contaminated soils

A sequential fractionation scheme, based on a soil phosphorous fractionation, was developed to assess the chemical nature, and thus the potential bioavailability and mobility of As, at the sites. Soil As was separated into five fractions with (i) anion exchange resin, (ii) NaHCO₃, (iii) NaOH, (iv) HCl, (v) residual. Most sites contained relatively low concentrations of As in the two most labile fractions. The bulk of the contaminant As at the sites seemed to be associated with soil amorphous Fe and Al minerals and the dominant clay minerals which help in As sorption are montmorillonite and mica. Resin-extractable As in particular might provide a good index of potential As bioavailability and mobility.     

Detection and characterisation of strong resistance to phosphine in Brazilian Rhyzopertha dominica (F.) (Coleoptera: Bostrychidae)

As failure to control Rhyzopertha dominica (F.) with phosphine is a common problem in the grain-growing regions of Brazil, a study was undertaken to investigate the frequency, distribution and strength of phosphine resistance in R. dominica in Brazil. Nineteen samples of R. dominica were collected between 1991 and 2003 from central storages where phosphine fumigation had failed to control this species. Insects were cultured without selection until testing in 2005. Each sample was tested for resistance to phosphine on the basis of the response of adults to discriminating concentrations of phosphine (20 and 48 h exposures) and full dose-response assays (48 h exposure). Responses of the Brazilian R. dominica samples were compared with reference susceptible, weak-resistance and strong-resistance strains from Australia in parallel assays. All Brazilian population samples showed resistance to phosphine: five were diagnosed with weak resistance and 14 with strong resistance. Five samples showed levels of resistance similar to the reference strong-resistance strain. A representative highly resistant sample was characterised by exposing mixed-age cultures to a range of constant concentrations of phosphine for various exposure periods. Time to population extinction (TPE) and time to 99.9% suppression of population (LT(99.9)) values of this sample were generally similar to those of the reference strong-resistance strain. For example, at 0.1, 0.5 and 1.0 mg L(-1), LT(99.9) values for BR33 and the reference strong-resistance strain were respectively 21, 6.4 and 3.7 days and 17, 6.2 and 3.8 days. With both strains, doubling phosphine concentrations to 2 mg L(-1) resulted in increased LT(99.9) and TPE. High level and frequency of resistance in all population samples, some of which had been cultured without selection for up to 12 years, suggest little or no fitness deficit associated with phosphine resistance. The present research indicates that widespread phosphine resistance may be developing in Brazil. Fumigation practices should be monitored and resistance management plans implemented to alleviate further resistance development.     

Assessing soil spatial variability and delineating site-specific management zones for a coastal saline land in eastern India

ABSTRACT

The present study was to delineate management zones (MZs) in salt affected Mahakalpada block in eastern India by capturing both spatial variability of soil parameters along with satellite derived Normalized Difference Vegetation Index (NDVI) and Enhanced Vegetation Index (EVI). Grid wise 237 soil samples collected from the study area were analyzed and spatial maps were generated for physicochemical properties, DTPA extractable micronutrients, i.e. iron, zinc, copper, and manganese and major nutrients, i.e. available nitrogen (AN), phosphorous (AP), and potassium (AK). Soil electrical conductivity and AK showed a high CV of 100% and 56.7%, respectively. Principal component analysis was performed using the soil spatial maps, NDVI and EVI maps and only four principal components which produced eigenvalues > 1 and accounting for 75.4% of the total variability were retained for further analysis. Further, fuzzy c-mean clustering was used to delineate the MZs based on fuzzy performance index (FPI) and normalized classification entropy (NCE) was used for identifying the three MZs. There was a significant difference between MZ1 and MZ2 for all the variables except AN and EVI whereas all the variables were significantly different between MZ1 and MZ3 highlighting the usefulness of MZs delineation technique for site-specific nutrient management.