Effects of temperature on growth,survival and physiological parameters in juveniles of Lophiosilurus alexandri,a carnivorous neotropical catfish

This study aimed to analyse the effects of different water temperatures on the growth, survival and blood physiological parameters of Lophiosilurus alexandri. Juveniles measuring 12.6 ± 0.5 cm and weighing 30.6 ± 3.6 g were subjected to four water temperature regimes: 23, 26, 29 and 32°C with four replicates. The animals were fed twice daily with formulated diet. The experiment lasted for 35 days. Survival was 100% at all water temperatures, and the best temperature for growth was estimated to be 27.8°C using a quadratic regression model. The estimated temperatures for the best feed conversion and highest feed consumption rates were 26.2 and 28.8°C respectively. The fat visceral‐somatic index was highest at 32°C. The highest haemoglobin and haematocrit values were 29.4 and 32.1°C respectively. For plasma protein and cholesterol, the lowest values estimated were 23.9 and 24.1°C respectively. Glucose and liver nitrogen content increased with rising temperature. Higher values of total ammonia in the water were observed at higher temperatures. No effects of temperature were seen on the amounts of muscle dry matter, nitrogen, energy content and triglycerides or on the hepatosomatic index. Water temperature has an important role in the developmental and blood physiological parameters of juvenile L. alexandri, and the quadratic regression model showed that the appropriate temperature for growth is between 27 and 28°C.     

Assessment of diffuse pollution associated with metals in urban sediments using the geoaccumulation index (Igeo)

Purpose

This study investigated the behavior of cadmium (Cd), lead (Pb), nickel (Ni), and zinc (Zn) in urban sediments collected in commercial, residential, and industrial areas of the city of Porto Alegre, Brazil, and evaluated different degrees of pollution in this urban subdrainage basin through the use of the geoaccumulation index (I_geo).

Materials and methods

Concentrations of Cd, Ni, Pb, and Zn were analyzed using acid digestion (EPA method 3050) in fractions <63 μm in 20 composite samples of urban sediment collected using a portable vacuum in 20 different sampling points on roads from three areas with diverse use: commercial, industrial, and residential.

Results and discussion

The values of I_geo were commercial area (3.35, Zn; 3.76, Cd; 3.60, Ni; 2.63, Pb) > residential area (3.34, Zn; 3.36, Cd; 2.94, Ni; 1.46, Pb) > industrial area (2.74, Zn; 1.78, Cd; 3.01, Ni; 1.45, Pb), indicating that the sediment was “highly contaminated” in the case of Zn and Ni, while for Cd, it was “moderately to highly contaminated,” and for Pb, it was “moderately contaminated.” The pollution is associated with traffic flow in all areas.

Conclusions

Research should be increased to make urban systems more sustainable, reducing their pollution potential and minimizing the delivery of potentially polluting particles into freshwater bodies. The I_geo allows for the determination of a simple index of diffuse pollution state associated with urban sediments.     

In vitro fermentation of alternansucrase raffinose-derived oligosaccharides by human gut bacteria

In this work, in vitro fermentation of alternansucrase raffinose-derived oligosaccharides, previously fractionated according to their degree of polymerization (DP; from DP4 to DP10), was carried out using small-scale pH-controlled batch cultures at 37 °C under anaerobic conditions with human feces. Bifidogenic activity of oligosaccharides with DP4-6 similar to that of lactulose was observed; however, in general, a significant growth of lactic acid bacteria Bacteroides , Atopobium cluster, and Clostridium histolyticum group was not shown during incubation. Acetic acid was the main short chain fatty acid (SCFA) produced during the fermentation process; the highest levels of this acid were shown by alternansucrase raffinose acceptor pentasaccharides at 10 h (63.11 mM) and heptasaccharides at 24 h (54.71 mM). No significant differences between the gas volume produced by the mixture of raffinose-based oligosaccharides (DP5-DP10) and inulin after 24 h of incubation were detected, whereas lower gas volume was generated by DP4 oligosaccharides. These findings indicate that novel raffinose-derived oligosaccharides (DP4-DP10) could be a new source of prebiotic carbohydrates.     

Genome Mining for Antimicrobial Compounds in Wild Marine Animals-Associated Enterococci

New ecosystems are being actively mined for new bioactive compounds. Because of the large amount of unexplored biodiversity, bacteria from marine environments are especially promising. Further, host-associated microbes are of special interest because of their low toxicity and compatibility with host health. Here, we identified and characterized biosynthetic gene clusters encoding antimicrobial compounds in host-associated enterococci recovered from fecal samples of wild marine animals remote from human-affected ecosystems. Putative biosynthetic gene clusters in the genomes of 22 Enterococcus strains of marine origin were predicted using antiSMASH5 and Bagel4 bioinformatic software. At least one gene cluster encoding a putative bioactive compound precursor was identified in each genome. Collectively, 73 putative antimicrobial compounds were identified, including 61 bacteriocins (83.56%), 10 terpenes (13.70%), and 2 (2.74%) related to putative nonribosomal peptides (NRPs). Two of the species studied, Enterococcus avium and Enterococcus mundtti, are rare causes of human disease and were found to lack any known pathogenic determinants but yet possessed bacteriocin biosynthetic genes, suggesting possible additional utility as probiotics. Wild marine animal-associated enterococci from human-remote ecosystems provide a potentially rich source for new antimicrobial compounds of therapeutic and industrial value and potential probiotic application.     

Application of a plant bioassay for the evaluation of ecotoxicological risks of heavy metals in sediments affected by mining activities

Purpose

The objective of this work was to evaluate the effectiveness of a plant bioassay (Phytotoxkit®) for screening ecotoxicological risks in sediments affected by mining activities.

Materials and methods

A total of 42 sediment samples affected by mining activities were studied, including 39 sediment samples from the Sierra Minera, Spain, an area affected by old extraction procedures, and three sediments from an area affected by opencast mining. These three samples were then mixed with limestone filler at 10, 20 and 30 %, providing nine stabilised samples. The total and soluble metal(loid) content (As, Cd, Cu, Fe, Pb and Zn) was determined in all samples, and the Phytotoxkit® bioassay was applied to determine the ecotoxicological effect of this procedure.

Results and discussion

The stabilised material had a neutral pH and low soluble metal(loid) concentration, similar to that of samples in which a natural attenuation process had taken place because of mixing with surrounding carbonate-rich materials. An ecotoxicological survey identified the low toxicity levels of the stabilised samples.

Conclusions

The applied bioassay is a good tool for screening metal(loid) contamination in areas affected by mining activities, since it provides information on both natural and simulated attenuation processes. The mixing of sediments with limestone filler could be applied to the remediation of zones affected by mining activities, because the toxicological effect on the tested organisms in the stabilised sediments was reduced significantly and the metal(loid) content was diminished.     

Bioactivity against Tribolium castaneum Herbst (Coleoptera: Tenebrionidae) of Cymbopogon citratus and Eucalyptus citriodora essential oils grown in Colombia

BACKGROUND: Essential oils isolated from Cymbopogon citratus (DC) Stapf. and Eucalyptus citriodora Hook grown in Colombia were analysed by gas chromatography–mass spectrometry (GC‐MS) and tested for repellent activity and contact toxicity against Tribolium castaneum (Herbst.) (Coleoptera: Tenebrionidae). RESULTS: The main components of C. citratus oil were geranial (34.4%), neral (28.4%) and geraniol (11.5%), whereas those of E. citriodora were citronellal (40%), isopulegol (14.6%) and citronellol (13%). The mean repellent doses after 4 h exposure were 0.021 and 0.084 mL L^?1 for C. citratus and E. citriodora oils respectively—values lower than that observed for the commercial product IR3535 (0.686 mL L^?1). CONCLUSION: These studies showed the composition and repellent activity of essential oils of C. citratus and E. citriodora, suggesting that these are potential candidates as insect repellents. Copyright © 2010 Society of Chemical Industry     

Occurrence of Pythium Ultimum Var. Ultimum in a Greenhouse on Spitsbergen Island, Svalbard

Pythium ultimum var. ultimum was isolated from carrot seedlings with damping off and from soil used for growing the plant in a greenhouse on Spitsbergen Island, Svalbard. The fungus caused severe damping off of carrot, cucumber and tomato seedlings after artificial inoculation. The rDNA internal transcribed spacer sequences of the Svalbard isolate were identical to those of Canadian and Japanese isolates of P. ultimum var. ultimum. The results suggest that the pathogen in the greenhouse on Svalbard was probably introduced from temperate regions through contaminated plants and/or soil imported to the island. This is the first record of P. ultimum var. ultimum within the Arctic zone.     

The CGIAR Virtual Library: A Vital Tool to Enhance Access to Agricultural Research

Literature searching instruments are available via the Internet, but one has to conduct several individual searches to retrieve relevant scholarly materials for research. This scenario led information experts from the Consultative Group on International Agricultural Research (CGIAR) to find ways to make life easier for scientists. The collaboration among Information and IT managers resulted in the launch of the CGIAR Virtual Library (CGVLibrary) in 2006. CGIAR supports 15 diverse international centers, located worldwide, which generate scholarly research results that are considered as public goods and must be shared freely with the international community. The CGVLibrary enables federated searching of catalogs and databases and carries hyperlinks to full-text CGIAR documents. This article provides an analysis of the content of the CGVLibrary, of the various information avenues it opens for improving access to agricultural research, and of how the tool is being improved and marketed to promote awareness and worldwide use.