What is your diagnosis? Muculent pleural effusion from a dog

Pleural effusion was examined from a 5-year-old, female Brittany Spaniel with a 7-day history of dyspnea, anorexia, and diarrhea. The fluid was yellow, cloudy, and slightly gelatinous, and had a total protein concentration of 2.8 g/dL, a total nucleated cell concentration of 1.1 x 10(3)/muL, and a triglyceride concentration of 177 mg/dL. A cytocentrifuged preparation contained a mixed inflammatory cell population with a predominance of small lymphocytes and abundant mucinous material in the background. The dog died 3 days later and a mass was found within the lumen and wall of the right auricle of the heart at necropsy. Histopathologic sections of the mass contained a population of anaplastic spindle cells diffusely suspended in a pale basophilic matrix, consistent with myxosarcoma. The cells were positive for vimentin and negative for cytokeratin, desmin, and von Willebrand factor VIII-related antigen. A myxoid matrix was confirmed by positive staining with Alcian blue. Myxosarcoma is a rare cardiac tumor in dogs that should be considered, along with mucus-producing carcinomas and bile, as a cause of muculent effusion.     

Hepatic intranuclear glycogen inclusions in western barred bandicoots (Perameles bougainville).

The western barred bandicoot, Perameles bougainville, is an endangered Australian marsupial species. Routine histology of liver samples collected at necropsy from 19 of 20 (95%) western barred bandicoots revealed the sporadic to common occurrence of abnormal hepatocyte nuclei characterized by margination of chromatin and concomitant central pallor. Some abnormal hepatocyte nuclei were mildly to markedly enlarged and irregularly shaped. Periodic acid-Schiff reagent stained 131 of 142 (92%) of these abnormal hepatocyte nuclei. Positive staining was completely eliminated by diastase pretreatment. Transmission electron microscopy revealed that abnormal hepatocyte nuclei with marginated chromatin did not contain viral particles. Rather, glycogen beta-particles and alpha-rosettes were identified within some abnormal hepatocyte nuclei. Glycogen intranuclear inclusions were an incidental finding in western barred bandicoot hepatocytes.     

Adaptation of regional digital soil mapping for precision agriculture

In the initial phase of a national project to map clay, sand and soil organic matter (SOM) content in arable topsoil in Sweden, a study area in south-west Sweden comprising about 100 000 ha of arable land was assessed. Models were created for texture, SOM and two estimated variables for lime requirement determination (target pH and buffering capacity), using a data mining method (multivariate adaptive regression splines). Two existing reference soil datasets were used: a grid dataset and a dataset created for individual farms. The predictor data were of three types: airborne gamma-ray spectrometry data, digital elevation from airborne laser scanning, and legacy data on Quaternary geology. Validations were designed to suit applicability assessments of prediction maps for precision agriculture. The predictor data proved applicable for regional mapping of topsoil texture at 50 × 50 m² spatial resolution (root mean square error: clay = 6.5 %; sand = 13.2 %). A novel modelling strategy, ‘Farm Interactive’, in which soil analysis data for individual farms were added to the regional data, and given extra weight, improved the map locally. SOM models were less satisfactory. Variable-rate application files for liming created from derived digital soil maps and locally interpolated soil data were compared with ‘ground truth’ maps created by proximal sensors on one test farm. The Farm Interactive methodology generated the best predictions and was deemed suitable for adaptation of regional digital soil maps for precision agricultural purposes.     

Rotifers enriched with iodine,copper and manganese had no effect on larval cod (Gadus morhua) growth,mineral status or redox system gene mRNA levels

It currently remains unclear if rotifers contain sufficient mineral levels to meet larval fish requirements. In this study, rotifers were enriched with a commercial enrichment (control), or with additional iodine, iodine and copper, or iodine, copper and manganese, and the effects of feeding these rotifers to Atlantic cod (Gadus morhua) larvae from 3 to 18 days post hatch were investigated. Rotifer enrichment with minerals was successful, but Mn enrichment also increased rotifer zinc levels. No differences were observed between treatments in larval growth or survival, or in the mRNA levels in the majority of the redox system genes analysed. Only Zn levels increased in cod larvae in response to mineral enrichment of rotifers. Apart from Zn, little evidence was found to suggest that cod larvae require increased concentrations above the control rotifer levels of the essential elements studied here.     

Giants' shoulders 15 years later: lessons,challenges and guidelines in fisheries meta‐analysis

Meta‐analysis has been an integral tool for fisheries researchers since the late 1990s. However, there remain few guidelines for the design, implementation or interpretation of meta‐analyses in the field of fisheries. Here, we provide the necessary background for readers, authors and reviewers, including a brief history of the use of meta‐analysis in fisheries, an overview of common model types and distinctions, and examples of different goals that can be achieved using meta‐analysis. We outline the primary challenges in implementing meta‐analyses, including difficulties in discriminating between alternative hypotheses that can explain the data with equal plausibility, the importance of validating results using multiple lines of evidence, the trade‐off between complexity and sample size and problems associated with the use of model output. For each of these challenges, we also provide suggestions, such as the use of propensity scores for dealing with selection bias and the use of covariates to control for confounding effects. These challenges are then illustrated with examples from diverse subfields of fisheries, including (i) the analysis of the stock–recruit relationship, (ii) fisheries management, rebuilding and population viability, (iii) habitat‐specific vital rates, (iv) life‐history theory and (v) the evaluation of marine reserves. We conclude with our reasons for believing that meta‐analysis will continue to grow in importance for these and many other research goals in fisheries science and argue that standards of practice are therefore essential.     

FT-IR study of the changes in carbohydrate chemistry of three New Jersey pine barrens leaf litters during simulated control burning

Low intensity control burns are a standard fuel reduction management tool used in pine barrens ecosystems. Periodic disturbances through fire can be an important influence on the cycling of nutrients within the ecosystem. Previous studies have shown that the inorganic chemistry of leaf litter residues differs with increasing temperature. Our study compared chemical changes in white oak (Quercus alba), pitch pine (Pinus rigida) and black huckleberry (Gaylussacia baccata), characteristic of the New Jersey pine barrens, during thermal decomposition using FT-IR spectroscopy. Three replicates of senescent leaf material were ground and separately heated for 2 h at: 100, 200, 300, 400 and 550 °C. These temperatures are representative of the range seen in fuel reducing prescribed burns in the pine barrens. Unburned litter of each species was used as a control. An optimization process using varying amounts of KBr and oak litter was performed to develop favorable FT-IR spectral conditions for a sample to KBr ratio of 0.75%. Chemometric analysis of the FT-IR spectra using principal component analysis (PCA) was used to analyze the changes in carbohydrate chemistry of each litter plant species (leaf litter species) at each temperature. In general, it appears that there is clear separation of leaf litter species at the different combustion temperatures. Infrared spectroscopy illustrated that all three species shared wavenumbers characteristic of the primary components of leaves such as cellulose, lignin and hemicellulose. Results from the PCA indicated separation of litter species and species by combustion temperature. PC axis 1 corresponds to the effects of temperature on leaf litter species and PC axis 2 separates the leaf litter species. At the low temperatures (control-200 °C), oak, pine and huckleberry litter species separated from each other. Wavenumbers that contributed to the separation of species at low temperatures belonged to functional group stretching frequencies of outer surface waxes, basic sugars, fatty acids and aldehydes. It appears that oak had more IR bands specific to suberin content. Convergence of these species occurs at 300 °C. Complexity of chemical composition decreases at this particular temperature as is shown by the decrease in wavenumber richness when compared to litters at low and high temperatures. Oak, pine and huckleberry had similar IR spectra showing bands belonging to outer surface wax content, pectin, lignin and hemicellulose. With increasing temperatures (400-550 °C), differences between litter species increased slightly. Plant material was reduced to similar composition due to thermal decomposition, which consisted of inorganic materials such as carbonate, phosphate and sulfate ions and possible fused aromatics.     

Utility of plasma N-terminal pro-brain natriuretic peptide (NT-proBNP) to distinguish between congestive heart failure and non-cardiac causes of acute dyspnea in cats

BackgroundCirculating plasma N-terminal pro-brain natriuretic peptide (NT-proBNP) concentration facilitates emergency diagnosis of congestive heart failure (CHF) in people. Its utility to discriminate between dyspneic cats with CHF vs. primary respiratory disease requires further assessment. Our objectives were to determine if NT-proBNP (1) differentiates dyspneic cats with CHF vs. primary respiratory disease; (2) increases with renal insufficiency; (3) correlates with left atrial dimension, radiographic cardiomegaly, and estimated left ventricular filling pressure (E/E_a).MethodsNT-proBNP was measured in 167 dyspneic cats (66 primary respiratory disease, 101 CHF) to evaluate (1) relationship with clinical parameters; (2) ability to distinguish CHF from primary respiratory disease; (3) optimal cut-off values using receiver operating characteristic (ROC) curve analysis.ResultsNT-proBNP (1) was higher (median and inter-quartile [25th–75th] percentile) in CHF (754 pmol/L; 437, 1035 pmol/L) vs. primary respiratory disease (76.5 pmol/L; 24, 180 pmol/L) cohorts (P < 0.001); (2) positively correlated in CHF cats with increased inter-ventricular septal end-diastolic thickness (ρ = 0.266; P = 0.007) and LV free wall thickness (ρ = 0.218; P = 0.027), but not with radiographic heart size, left atrial size, left ventricular dimensions, E/E_a ratio, BUN, creatinine, or thyroxine; (3) distinguished dyspneic CHF cats from primary respiratory disease at 265 pmol/L cut-off value with 90.2% sensitivity, 87.9% specificity, 92% positive predictive value, and 85.3% negative predictive value (area under ROC curve, 0.94).ConclusionsNT-proBNP accurately discriminated CHF from respiratory disease causes of dyspnea.     

THE RUSSIAN SEAFOOD REVOLUTION: SHIFTING CONSUMPTION TOWARDS AQUACULTURE PRODUCTS

A food consumption revolution is taking place in Russia. After decades of severe constraints on food consumption options under the communist regime Russian consumers are now adopting new food products—including seafood products – at a high pace. Since Russian consumers have previously had very limited seafood consumption choices, the market can be seen as an interesting laboratory for investigating consumer responses to products that have previously not been available. Among imported seafood products are both wild and farmed species. Furthermore, Russian imports include both traditional species such as herring, and ‘new’ species such as pangasius. We analyze market integration among seafood products using Russian monthly import prices from 2002 to 2007 on several products, such as herring, salmonids and pangasius. We find that pangasius compete in the white fish segment, and is a price leader. In the salmonids market, farmed salmon trout appears to be the price leader, both in the fresh and frozen market segment.