Structure-physicochemical function relationships of soybean beta-conglycinin heterotrimers

We purified four single molecular species of beta-conglycinin heterotrimers consisting of the alpha and beta subunits or the alpha' and beta subunits from mutant soybean cultivars lacking the alpha or alpha' subunit, respectively, and examined their structural features and physicochemical functions. The extent of the hydrophobicities of the heterotrimers was related to the number of the alpha or alpha' subunit. The thermal stabilities of the heterotrimers were mainly conferred by the subunit which had lower thermal stability. Solubilities at low ionic strength (mu = 0.08) of the heterotrimers containing the alpha or alpha' subunit were very similar to those of the alpha and alpha' homotrimers, respectively. Emulsifying abilities and heat-induced associations of the heterotrimers containing one beta subunit were similar to those of the alpha or alpha' homotrimer, whereas those of the heterotrimers containing two beta subunits were similar to those of the beta homotrimer.     

Antioxidative compounds from the outer scales of onion

Antioxidative compounds were isolated from the methanol extract of dry outer scales of onion (Allium cepa L.). Nine phenolic compounds (1-9) were finally obtained by reversed-phase high-performance liquid chromatography, and their structures were elucidated by NMR and mass spectrometry analyses. They were the six known compounds, protocatechuic acid (1), 2-(3,4-dihydroxybenzoyl)-2,4,6-trihydroxy-3(2H)-benzofuranone (2), quercetin 4'-O-beta-D-glucopyranoside (3), quercetin (5), 4'-O-beta-d-glucopyranoside of quercetin dimer (7), and quercetin dimer (8), and three novel compounds, condensation products of quercetin with protocatechuic acid (4), adduct of quercetin with quercetin 4'-O-beta-D-glucopyranoside (6), and quercetin trimer (9). These phenolic compounds were tested for their antioxidant properties using autoxidation of methyl linoleate in bulk phase or free radical initiated peroxidation of soybean phosphatidylcholine in liposomes. The flavonoid compounds having o-dihydroxy substituent in the B-ring were shown to be effective antioxidants against nonenzymic lipid peroxidation.     

Evaluation and validation of a commercially available enzyme-linked immunosorbent assay for the neonicotinoid insecticide imidacloprid in agricultural samples

The performance of a commercially available microtiter plate ELISA kit for the determination of the neonicotinoid insecticide imidacloprid was evaluated for sensitivity, selectivity, influence of organic solvent used for extraction procedure, matrix interference originated from agricultural sample, accuracy, and method comparison with conventional HPLC analysis. The limit of detection for the kit (0.1 or 0.5 ng/mL) was determined. The working range (1-39 ng/mL) experimentally calculated on the basis of a criterion, which is determined as the range from I(20) to I(80), was comparable to that established by the manufacturer (1-50 ng/mL). The linearity of the standard curve based on the kit-assembled standard solutions agreed with the one based on the self-made standard solutions. Specificity studies indicate that the imidacloprid monoclonal antibody can readily distinguish the target compound from other structurally related neonicotinoid analogues and some metabolites, with the exception of clothianidin, the cross-reactivity of which was approximately 12%. To extract imidacloprid from an agricultural sample (apple) as simply and rapidly as possible, some extraction methods were examined. Consequently, the extraction method with hand-shaking for 5 min was the best among the examined methods. For the analysis of imidacloprid in apple samples, it was extracted directly with methanol and the extracts were diluted 10-fold (100-fold in the well) with water prior to ELISA analysis. No significant matrix interference was observed with the dilution factor. Recoveries of imidacloprid from fortified apple samples ranged from 87.7 to 112.0%. The results obtained with the ELISA kit correlated well with those by the reference method (conventional HPLC analysis) for apple samples (r > 0.998). These findings strongly indicate that the ELISA kit may be employed routinely for an on-site imidacloprid residue analysis of apple samples.     

Molecular mapping for seedling cold tolerance QTLs in rice

The quantitative trait loci(QTLs)for cold tolerance relative characters were identified with microsatellite markers.Ten QTLs located on chromosome1,3,4,5,6,8,9,11(two)and 12were detected for seedling height at different low temperature.Only 2 of these were detected at the same locus at four environments.1 was significant at three environments.6 were significant at two environments and 1 was significant at one environment.Seven QTLs located on chromosome 1(two),2(two),5,6,8were found for ow temperature chlorosis resistance and five QTLs located on chromosome 3,4,7,8,11resistant to chilling injury.The amount of variation explained by indivdual QTL ranged from 4.85%to 49.34%,There was no linkage relationship among the three characters.which indicates seediling cold tolerance is a complex character and is controlled by different QTLs.     

Talin binding to integrin beta tails: a final common step in integrin activation

Control of integrin affinity for ligands (integrin activation) is essential for normal cell adhesion, migration, and assembly of an extracellular matrix. Integrin activation is usually mediated through the integrin beta subunit cytoplasmic tail and can be regulated by many different biochemical signaling pathways. We report that specific binding of the cytoskeletal protein talin to integrin beta subunit cytoplasmic tails leads to the conformational rearrangements of integrin extracellular domains that increase their affinity. Thus, regulated binding of talin to integrin beta tails is a final common element of cellular signaling cascades that control integrin activation.     

Magmatic dike resonances inferred from very-long-period seismic signals

Very-long-period (VLP) signals showing simple decaying harmonic oscillations with periods near 10 seconds and lasting for about 300 seconds were observed in association with an earthquake swarm that occurred beneath Hachijo Island, Japan. Results from the source-mechanism analysis and waveform simulation based on a fluid-filled crack model consistently point to the resonance of a dike filled with a basaltic magma as the source of the VLP signals. Thus, VLP signals can be used to probe the state of the fluid and dynamic processes within a volcanic system.     

DNA methylation analysis on satellite I region in blastocysts obtained from somatic cell cloned cattle

Many observations have been made on cloned embryos and on adult clones by somatic cell nuclear transfer (SCNT), but it is still unclear whether the progeny of cloned animals is presenting normal epigenetic status. Here, in order to accumulate the information for evaluating the normality of cloned cattle, we analyzed the DNA methylation status on satellite I region in blastocysts obtained from cloned cattle. Embryos were produced by artificial insemination (AI) to non‐cloned or cloned dams using semen from non‐cloned or cloned sires. After 7 days of AI, embryos at blastocyst stage were collected by uterine flushing. The DNA methylation levels in embryos obtained by using semen and/or oocytes from cloned cattle were similar to those in in vivo embryos from non‐cloned cattle. In contrast, the DNA methylation levels in SCNT embryos were significantly higher (P < 0.01) than those in in vivo embryos from non‐cloned and cloned cattle, approximately similar to those in somatic cells used as donor cells. Thus, this study provides useful information that epigenetic status may be normal in the progeny of cloned cattle, suggesting the normality of germline cells in cloned cattle.     

The study on method to draw large-scale soil map in diluvial soil area in Hokkaido, using digital elevation data for a 10 m grid

(pp. 59–66)
In order to understand the detailed soil distribution of a terrace with a diluvial deposit, the method to draw a large-scale soil map was studied in Urausu Town of Sorachi district by combinig soil survey and digital elevation data for a 10 m grid.
The results are summarized as follows:

• 1) 

  From a soil survey, soils in the research area were classified into 3 soil series groups according to Classification of Cultivated Soils in Japan, Third Approximation, which were Skeletal Terrace Brown Forest Soils, Fine-textured Aquic Brown Forest Soils and Fine-textured Haplic Gray Upland Soils. In addition, Fine-textured Haplic Gray Upland Soils · were classified into 2 categories based on the abundance of gravel in the subsoil.

       

Use of Jeffries acid oxalate treatment in particle-size analyses of Ando soils

Use of Jeffries acid-oxalate treatment in particle-size analyses of Ando soils for breaking up the sand- and silt-size aggregates bound by allophane, allophane-like constituents and hydrous iron oxides was studied. The analyses by this method and those by a method using sonic-wave oscillation were compared for nine Ando soil samples having different clay-mineral compositions and organic-matter contents. There were minor differences in the sand contents between the two analyses, but the clay contents were higher and the silt contents were lower after Jeffries acid oxalate treatment.

Characterization of the silt-size separates by an X-ray powder method, water vapor adsorption and electron microscopy indicated that the lower silt contents after Jeffries acid oxalate treatment were mainly due to dissolution of allophane and allophane-like constituents, whereas the silt-size separates after sonic-wave treatment still contained these mineral constituents. The proposed procedure for particle-size analysis was also useful for two ferruginous soils representing the Hydrandept and Torrox.