A PINOID-dependent binary switch in apical-basal PIN polar targeting directs auxin efflux

Polar transport-dependent local accumulation of auxin provides positional cues for multiple plant patterning processes. This directional auxin flow depends on the polar subcellular localization of the PIN auxin efflux regulators. Overexpression of the PINOID protein kinase induces a basal-to-apical shift in PIN localization, resulting in the loss of auxin gradients and strong defects in embryo and seedling roots. Conversely, pid loss of function induces an apical-to-basal shift in PIN1 polar targeting at the inflorescence apex, accompanied by defective organogenesis. Our results show that a PINOID-dependent binary switch controls PIN polarity and mediates changes in auxin flow to create local gradients for patterning processes.     

The dog genome: survey sequencing and comparative analysis

A survey of the dog genome sequence (6.22 million sequence reads; 1.5x coverage) demonstrates the power of sample sequencing for comparative analysis of mammalian genomes and the generation of species-specific resources. More than 650 million base pairs (>25%) of dog sequence align uniquely to the human genome, including fragments of putative orthologs for 18,473 of 24,567 annotated human genes. Mutation rates, conserved synteny, repeat content, and phylogeny can be compared among human, mouse, and dog. A variety of polymorphic elements are identified that will be valuable for mapping the genetic basis of diseases and traits in the dog.     

Genome sequence of Aedes aegypti, a major arbovirus vector

We present a draft sequence of the genome of Aedes aegypti, the primary vector for yellow fever and dengue fever, which at approximately 1376 million base pairs is about 5 times the size of the genome of the malaria vector Anopheles gambiae. Nearly 50% of the Ae. aegypti genome consists of transposable elements. These contribute to a factor of approximately 4 to 6 increase in average gene length and in sizes of intergenic regions relative to An. gambiae and Drosophila melanogaster. Nonetheless, chromosomal synteny is generally maintained among all three insects, although conservation of orthologous gene order is higher (by a factor of approximately 2) between the mosquito species than between either of them and the fruit fly. An increase in genes encoding odorant binding, cytochrome P450, and cuticle domains relative to An. gambiae suggests that members of these protein families underpin some of the biological differences between the two mosquito species.     

The diagnostic relevance of NT‐proBNP and proANP 31–67 measurements in staging of myxomatous mitral valve disease in dogs

Background

There is no agreement in current publications regarding the reliability of serum concentrations of natriuretic peptides (NPs) to detect dogs with subclinical myxomatous mitral valve disease (MMVD) and to differentiate between asymptomatic stages.

Objectives

We sought to compare N‐terminal pro‐B‐type natriuretic peptide (NT‐proBNP) and pro‐atrial natriuretic peptide 31‐67 (proANP) concentrations between various stages of canine MMVD and to investigate the influence of age, weight, and sex.

Methods

In this prospective study, dogs were classified in different disease stages using the modified Canine Heart failure International Expert Forum (CHIEF) system. Serum NP concentrations were compared between groups.

Results

A total of 559 samples from 116 healthy dogs and 236 dogs with MMVD were analyzed. Using cut‐off values (1207 pmol/L for NT‐proBNP, 1578 fmol/mL for proANP), dogs with MMVD with and without congestive heart failure (CHF) could be differentiated with a sensitivity of 83% for both and specificities of 85% and 86%, respectively. Dogs staged in CHIEF B1 and B2 could not be distinguished based on NP concentrations due to wide variation within the groups. Intact females (means 598 pmol/L and 1036 fmol/mL, respectively) had significantly higher values of both NPs than intact males (315 pmol/L and 836 fmol/mL).

Conclusions

NPs in canine MMVD are useful to discriminate between asymptomatic dogs and dogs with CHF. Due to a large overlap of NP‐concentrations between the groups, NPs do not seem to be useful to differentiate between dogs in stages B1 and B2. Interpretation of NT‐proBNP and proANP values should include consideration of sex‐specific differences.     

Indirect effects of N and S deposition on a Norway spruce ecosystem. An update of findings within the Skogaby project

In this paper we try to interpret results from different investigations where an ecosystem with Norway spruce was manipulated with increased N and S deposition via the soil system. The site, in Skogaby in Southwest Sweden, had 1989–93 an annual deposition of 9 kg NH₄-N; 7 kg NO₃-N and 20 kg SO₄-S ha^–1. The stand was treated during 6 years with 100 kg N and 114 kg S ha^– y^–1 in the form of ammonium sulphate (NS treatment). The stand reacted with increased above ground production of 31% after 3 years of treatment. The uptake above ground of N was 155 kg ha^–1 higher than in the control. Those trends were even stronger after 6 years of treatment. There were no decreases in the uptake of P, K, Ca or Mg (but for B) after 3 or 6 years of NS-treatment. Needle macro nutrient concentrations in relation to N decreased for several nutrients due to dilution effects. As result of the NS treatment pH increased markedly in the litter layer, and less, but significantly, in the humus layer. A decrease in pH value by about 0.3 units was found in the rest of the soil profile down to 50 cm. Dry mass of needle litter fall and litter layer both increased as a result of 6 years of NS-treatment. After three years of treatment 77–80% of all living fine roots in both control and NS treatment were found in the humus layer and the upper 10 cm of the mineral soil. The amount of living fine roots in the humus layer of NS-treated trees decreased to about one third of the control, and the amount of dead fine roots increased by 150% compared with untreated trees after 6 years of treatment. It is argued that the decreased amount of living and increased amount of dead fine roots not necessarily are indications of decreased root vitality. It can also be explained by increased root turnover rate and decreased decomposition rates of N rich new and old fine root litter. No inorganic N was leached from the control plots whereas the NS treated plots started to leach NO₃ the second year of treatment. During 1989–1993 a total of 44 kg NO₃-N and 30 kg NH₄-N per ha was lost from the system which means that 88% of the N supplied was retained by the ecosystem. At first SO₄ was adsorbed in the soil, but after five years of treatment the output was almost equal to the input.     

Photosynthesis in Norway spruce seedlings infected by the needle rust Chrysomyxa rhododendri

Chrysomyxa rhododendri (DC.) De Bary is a needle rust with a host shift between Rhododendron sp. and Norway spruce (Picea abies (L.) Karst.), penetrating only the new developing flushes of the conifer. Because little is known about its effects on trees, we investigated several parameters related to photosynthesis in artificially infected 3-year-old Norway spruce seedlings. The potential efficiency of photosystem II (PSII; derived from chlorophyll fluorescence measurements) was reduced in infected current-year needles as soon as disease symptoms were visible, about three weeks after inoculation. Two weeks later, photosynthetic O(2) evolution (P(max)) of infected needles was less than 20% of control needles, whereas respiratory O(2) uptake (R(D)) was about three times higher than that of control needles. Nonstructural carbohydrate concentrations were about 60% of control values in all parts of the shoots of infected trees. Photosynthetic inhibition was associated with marked decreases in chlorophyll concentration and chlorophyll a/b ratio but only a small reduction in carotenoid concentration. In infected trees, P(max) of noninfected 1-year-old and 2-year-old needles was 50 and 80% higher than in the corresponding age class of needles of control trees. Estimation of potential daily net dry mass production, based on P(max), R(D), specific leaf area, carbon content and needle biomass, indicated that seedlings infected once were able to produce 60%, and those infected twice only 25%, of the dry mass of controls. We conclude that afforestation and regeneration of Norway spruce is seriously impaired in regions where seedlings are frequently attacked by Chrysomyxa.     

Analysis of Genebank Evaluation Data by using Geostatistical Methods

Genebanks often characterize accessions based on evaluation trials. This paper evaluates geostatistical methods as a tool to increase the utility of evaluation data. These methods were selected to overcome limitations resulting from a relative lack of replication and the scarcity of standards or check varieties. The data employed in the present study comprise nine characteristics of spring and winter barley, evaluated mostly as ratings. Ratings with quasi-metric scales were transformed by using the folded exponential transformation. To estimate the genetic component of the total effect, we compared two methods: Method 1 whereby a variogram is fitted by non-linear regression, and subsequently the implied spatial correlation is embedded into a mixed model analysis, which estimates the genetic effect by Best Linear Unbiased Prediction (BLUP); and Method 2 where each data value is re-estimated by kriging to correct for spatial effects and then the corrected data are submitted to a mixed model analysis. For practical application we propose Method 1 (though occasionally we met convergence problems): Fit the short range of the empirical variogram, visually choose the suitable covariance model. Use this and the initial values from non-linear regression fit with the mixed model, fixing the spatial parts at their starting values from non-linear regression, and estimate genetic effects by BLUP by using the fitted mixed model. To improve performance, we recommend that more standard or check varieties be used and, wherever possible, replace rating scales with metric scales or free-percentage scales (without categories).     

Morbidity in Swedish dairy calves from birth to 90 days of age and individual calf-level risk factors for infectious diseases

The health of 3081 heifer calves born in 122 dairy herds in the south-west of Sweden from 1 January to 31 December, 1998, was monitored from birth until 90 days of age. The calves were kept either in individual pens (n=2167), in group pens, with 3–8 calves to a pen and manual feeding of milk (n=440), in group pens with 6–30 calves per pen and an automatic milk-feeding system (n=431), or with their dams (n=43). Disease incidence was recorded by farmers and project veterinarians, who clinically examined the calves and auscultated their lungs every 2–3 months. A disease was graded as ‘severe’ if the general loss of condition or of appetite in the calf continued for >2 days or if the animal suffered severe weight loss due to the disease. The effects of season, breed, housing, and type of colostrum feeding, and time, place and supervision of calving on the incidences of diarrhea, severe diarrhea, respiratory disease, other infectious disease and moderately to severely increased respiratory sounds, were analyzed by logistic-regression models (with herd as a random effect). The total morbidity rate was 0.081 cases per calf-month at risk. Incidence rates of arthritis, diarrhea, omphalophlebitis, respiratory disease and ringworm were 0.002, 0.035, 0.005, 0.025 and 0.009 cases per calf-months at risk, respectively. The odds ratios for diarrhea and severe diarrhea were increased in Swedish Red and Whites (OR: 1.6, 2.3) and in calves that received colostrum from first-lactation cows (OR: 1.3–1.8), and for severe diarrhea in calves born in summer or that received colostrum through suckling (OR: 1.7, 1.8). The odds ratios for respiratory disease and increased respiratory sounds were increased in calves housed in large-group pens with an automatic milk-feeding system (OR: 2.2, 2.8). Supervision of calving was associated with a decreased odds ratio for respiratory disease (OR: 0.7) and birth in individual maternity pen or tie stalls with a decreased odds ratio for increased respiratory sounds (OR: 0.5–0.6). Cross-breeds with beef breeds were associated with increased odds ratios for increased respiratory sounds (OR: 2.1–4.3) and colostrum from second-lactation cows and birth during night for other infectious disease (OR: 1.6, 1.5).     

Replanting conifer seedlings after pine weevil emigration in spring decreases feeding damage and seedling mortality

Replanting at appropriate times after harvesting a coniferous forest stand can help efforts to suppress seedling mortality caused by the pine weevil Hylobius abietis, but optimal times are uncertain. We hypothesized that planting in June rather than May in the third season after harvest would reduce feeding damage by the pine weevil and increase seedling survival rates in central Sweden, where new-generation weevils mainly fly away from their development sites in May/early June. An experimental test of the hypothesis in eight clear-cuts confirmed that planting in June instead of May reduced proportions of seedlings attacked by pine weevil, bark removal from seedlings’ stems, and proportions of seedlings killed by feeding damage. These differences between seedlings planted in May and June declined to some extent with time but still remained significant after two growing seasons. The total seedling mortality after two seasons did, however, not differ significantly between seedlings planted in May and June. Overall, 29% of all seedlings were killed by pine weevil, 4.0% by Hylastes bark beetles, and 2.3% by drought. The results indicate that replanting in spring during the third season after harvest can advantageously continue until mid-June with respect to damage and mortality.     

Energetic eco‐physiology of the soil microbiota in two landscapes of southern and northern Germany

Interactions between microbial communities and organic matter were analyzed for soils from the project regions ’︁Ecosystem Research in the Agricultural Landscape/FAM, Munich’ in southern Germany and ’︁Ecosystem Research in the Bornhöved Lake district’ from northern Germany using ratios between microbial biomass content (C_mic), microbial metabolic quotient (qCO₂) and organic carbon content (C_org). In the agricultural soils in southern Germany, the qCO₂/C_org ratio differed significantly with respect to agricultural management in contrast to ecophysiological C_mic/C_org ratio. In addition, C_mic/C_org ratio decreased from 39 to 21 mg C_mic g^—1 C_org and qCO₂/C_org ratio increased from 72 to 180 mg CO₂‐C g^—1 C_mic h^—1 (g C_org g^—1 soil)^—1 with increasing soil depth. For the upper soil horizons from the landscape in northern Germany the two quotients differed significantly with reference to land use showing highest microbial colonization under grassland and lowest under beech forest. In contrast, C use efficiency was lowest in arable field under maize monoculture and highest in a wet grassland having a high organic C content.