Genetic structure and diversity of India hybrid tea

The most important evolutionary event in the success of commercial tea cultivation outside China in ~30 countries came about by the origin of India hybrid tea in India, derived from the extensive spontaneous hybridization that took place between the Assam type tea growing in the forest regions of Assam, North-East India and China type tea introduced from China in ~1875 to many regions of North-East India. The release of an enormous pool of vigorous and highly variable plants of India hybrid tea in North-East India was a significant step forward for the origin and evolution of tea as a highly successful crop plant. The 1,644 accessions and clones of India hybrid tea, representatives of known 15 morphotypes, were screened by 412 AFLP markers amplified by 7 AFLP primer pair combinations. All the 412 genetic loci were polymorphic across the 1,644 accessions and clones. The analysis was done with distance (PCoA and NJ) methods, and the STRUCTURE (Bayesian) model. Both PCoA and NJ analysis clustered 1,644 tea accessions and clones into six major groups with one group in each, constituted mostly by China hybrid, Assam China hybrid and Assam hybrid morphotypes, of distinct genetic identity. No group was exclusive for any particular morphotype. The accessions and clones belonging to morphotypes, Assam type, Assam hybrid, China hybrid and China Cambod were distributed in all the groups. It is the Assam type/Assam hybrid morphotypes which exhibit much broader genetic variability than in China type/China hybrid/Cambod type/Cambod hybrid morphotypes. The STRUCTURE analysis inferred 16 populations (K = 16), for which the greatest values of probability were obtained. Nine of the 16 clusters were constituted by the tea accessions and clones of ‘pure’ ancestry. The remaining clusters were of ‘mixed’ ancestry. This analysis provides evidence that the accessions and clones of the same morphotype are not always of same genetic ancestry structure. The tea accessions and clones obtained from outside North-East India shared the same groups (distance method) and clusters (STRUCTURE model) which were constituted by North-East India accessions. The present study also demonstrates very narrow genetic diversity in the commercial tea clones vis-à-vis the profound genetic diversity existing in the tea accessions. These clones were distributed in hardly two of the six groups in NJ tree. The identified 105 core accessions and clones, capturing 98% diversity, have their origin from almost all groups/subgroups of NJ tree.     

Trichoderma sp. endochitinase and β-1,3-glucanase impede Rhizoctonia solani growth independently,and their combined use does not enhance impediment

Rhizoctonia solani causing rice sheath blight is responsible for significant crop yield losses. Trichoderma spp., biological control agents, have been reported to antagonize R. solani through coordinated action of several cell wall-degrading enzymes including endochitinase and β-1,3-glucanase. In this study two antifungal genes, encoding endochitinase and β-1,3-glucanase, isolated from Trichoderma sp. antagonistic to R. solani, were cloned individually in His-tagged expression vectors and mobilized in Escherichia coli for protein expression. The purified proteins assayed in vitro with R. solani impeded pathogen growth independently by causing hyphal distortions revealed through scanning electron microscopy. The combined use of endochitinase and β-1,3-glucanase did not enhance the inhibition. The distortions caused by endochitinase were due to catalytic activity of Glu172 and Asp241 residues on glycosidic linkages in chitin polymers, whereas Glu628, Tyr631, and Asp569 in β-1,3-glucanase targeted glucan polymers. The distinctions of this study from earlier reports are (a) chitin polymers in the R. solani cell wall are exposed and not embedded within the β-glucan matrix; (b) chitin and β-1,3-glucan are vital polymers in the R. solani cell wall, rather than chitin as the only main polymer; and (c) hyphal tips of R. solani remain unaffected after an antifungal assay with endochitinase and β-1,3-glucanase, instead of exhibiting distortion.     

Topical delivery of diclofenac into and across equine skin from a novel liquid diclofenac epolamine formulation

The aim was to investigate diclofenac delivery into and across equine skin in vitro using Franz diffusion cells from a novel diclofenac epolamine (DIC‐EP; 1.3%) formulation and to compare the results to those of Surpass^® (1% diclofenac sodium liposomal cream) and a 1% aqueous solution of diclofenac sodium. Skin was harvested from the lower legs of Freiberger geldings immediately after slaughter and sliced to a thickness of ~2 mm. Skin samples were divided into two groups [Group 1: 1 year old (n = 2) and Group 2: 6–8 years old (n = 3)]. Cumulative permeation of diclofenac in Groups 1 and 2 after 24 h using diclofenac sodium solution was 1.91 ± 0.27 and 1.76 ± 0.34 μg/cm², respectively. The values for Surpass^® and DIC‐EP were 3.2 ± 0.8/3.3 ± 0.7 μg/cm² and 230 ± 59/89.2 ± 32.5 μg/cm², respectively. Thus, diclofenac permeation from DIC‐EP was significantly greater and appeared to show an age‐dependent effect. Mathematical modelling showed that the DIC‐EP formulation significantly increased diclofenac partitioning into the skin and a linear correlation was observed between steady‐state flux and the partition parameter. Greater skin deposition of diclofenac was also observed with DIC‐EP. These preliminary results suggest that the DIC‐EP formulation may be effective in treating inflammatory conditions in horses.     

Molecular mapping of black rot resistance locus Xca1bo on chromosome 3 in Indian cauliflower (Brassica oleracea var. botrytis L.)

Black rot is the most devastating disease of cauliflower worldwide causing severe damage to crop. The identification of markers linked to loci that control resistance can facilitate selection of plants for breeding programmes. In the present investigation, F₂ population derived from a cross between ‘Pusa Himjyoti’, a susceptible genotype, and ‘BR‐161’, a resistant genotype, was phenotyped by artificial inoculation using Xcc race 1. Segregation analysis of F₂ progeny indicated that a single dominant locus governed resistance to Xcc race 1 in ‘BR‐161’. Bulk segregant analysis in resistant and susceptible bulks of F₂ progeny revealed seven differentiating polymorphic markers (three RAPD, two ISSR and two SSR) of 102 markers screened. Subsequently, these markers were used to genotype the entire F₂ population, and a genetic linkage map covering 74.7 cM distance was developed. The major locus Xca1bo was mapped in 1.6‐cM interval flanked by the markers RAPD 04₈₃₃ and ISSR 11₆₃₅. The Xca1bo locus was located on chromosome 3. The linked markers will be useful for marker‐assisted resistance breeding in cauliflower.     

Mapping of quantitative trait loci for resistance to race 1 of Pyrenophora tritici‐repentis in synthetic hexaploid wheat

Tan spot, caused by a necrotrophic fungus Pyrenophora tritici‐repentis (Ptr), has become an important foliar disease of wheat worldwide. Effective control of tan spot can be achieved by deployment of resistant wheat cultivars. An F_2:3 population derived from a cross between synthetic hexaploid wheat (SHW), TA4161‐L1 (moderately resistant) and susceptible winter wheat cultivar, ‘TAM105’ was evaluated with race 1 of Ptr under controlled conditions. The population was genotyped using Diversity Arrays Technology (DArT). Presence of transgressive segregants indicated contribution of positive alleles from both parents. Two major QTLs were located on the short arm of chromosomes 1A and 6A and designated as QTs.ksu‐1A and QTs.ksu‐6A, respectively. Two additional QTLs were identified on chromosome 7A. Resistant alleles of all the QTLs were contributed by TA4161‐L1. Novel QTLs on 6A and 7A can be a valuable addition to known resistance genes and utilized in breeding programmes to produce highly resistant cultivars.     

Hemocyte diversity of the American bollwormHelicoverpa armigera

The hemocytes of the American bollwormHelicoverpa armigera (Hübner) were studied in the last instar larvae by phase contrast microscopy to investigate the differences among 14 populations, collected from ten locations, spread over a distance of approximately 3000 km in six different states of India. The cluster analysis of differential hemocytes showed as many as 11 clusters of populations at 5% and six clusters at 10% homogeneity level. The cluster analysis of hemocytes of seven populations from cotton crops showed five and three clusters at 5% and 10% homogeneity levels, respectively. Diversity of hemocytes of four populations from chickpea was wider than that from cotton. The differences in hemocytes of various populations may be due to space, time, host plant, insecticide use, other agroecological conditions, and insect genetic variabilityper se. The field populations ofH. armigera heavily treated with insecticides appeared to contain more spherulocytes at the expense of plasmatocytes and granulocytes. The treatment of 6-day-old larvae ofH. armigera with cypermethrin decreased plasmatocytes and granulocytes, and increased prohemocytes and spherulocytes in the hemolymph of last instar larvae. Thus, differential hemocyte counts may serve as an indicator of insecticide exposure and the diversity of insect populations. http://www.phytoparasitica.org posting Dec. 20, 2004.     

Genetic analysis of root traits in tropical carrots (Daucus carota L.)

Genetic Resources and Crop Evolution - Carrot root being used as vegetable and salad due to the nutritional value, hence consumers demanding carrot production. Thus, the production can be achieved...     

Inheritance of purple colour and its different flavonoids profiling in F2 populations of tropical carrot (Daucus carota L.)

Genetic Resources and Crop Evolution - The results of the inheritance study revealed that the purple root epiderm (Pe) and cortex (Pcx) colour were dominant over the yellow colour of epiderm (ye)...     

Understanding Tecomella undulata: an endangered pharmaceutically important timber species of hot arid regions

Tecomella undulata (Sm.) Seem. (family Bignoniaceae) is an economically and pharmaceutically important small tree of arid regions of India, Pakistan and Arabia. It is well known as ‘Desert teak’ or ‘Marwar teak’ being the main source of timber amongst the tree species of desert region of Rajasthan, India. T. undulata has occupied a reputed position of having valuable medicinal properties in both folk and classical streams of indigenous medicinal systems. Plant is well-known for its wide range of therapeutic activities like hepatoprotective, antibacterial, antimicrobial, antifungal and anti-termite, immunomodulatory, anticancer, cytotoxic, analgesic, anti-inflammatory, anti-obesity, etc. Rohitakarishta, an ayurvedic drug obtained from T. undulata, is the classical compound which is being prescribed in liver and spleen diseases, oedema and anaemia. This well accepted agroforestry tree of the arid regions is heading towards extinction due to its increasing demand in timber and pharmacological industries coupled with negligible conservation efforts. This species has now been designated as “threatened” in Rajasthan, India. Susceptibility to many pathogens and pests is one of the major problems and detrimental factor in successful establishment and growth of this tree. Conventionally, it is propagated through seeds; however, natural regeneration of plants is poor due to air dispersal of seeds to remote areas, extreme environmental conditions during seed dispersal, improper harvest and storage of seeds, and short seed viability. The tree is very slow growing and suitable vegetative propagation methods are not available for its rapid multiplication. Alternatively, attempts have been made to propagate this tree through in vitro approaches; however, it also has many limitations including difficulties in culture establishment, slow growth, low rooting rates as well as field establishment rates. Moreover, little information is available regarding genetic diversity in this species using morphological and molecular markers. Efforts to undertake breeding programs for improvement of T. undulata have not been initiated yet. Some literature is available regarding cytology, role in agroforestry and silviculture, association with vesicular arbuscular mycorrhiza and application of biotechnological tools in T. undulata, however, an exponential increase in research publications on identification of bioactive constituents and verification of pharmacological effects has been recorded in the recent past. In this communication, we emphasize the research progress made in T. undulata on various aspects and suggest some future directions of research.