Understory plant diversity and biomass in hybrid poplar riparian buffer strips in pastures

Understory plant biomass, species richness and canopy openness were measured in six-year old hybrid poplar riparian buffer strips, in the understory of two unrelated clones (MxB-915311 and DxN-3570), planted along headwater streams at three pasture sites of southern Quebec. Canopy openness was an important factor affecting understory biomass in hybrid poplar buffers, with lower understory biomass observed on sites and under the clone with lower canopy openness. Although tree size was an important factor affecting canopy openness, relationships between total stem volume and canopy openness, for each clone, also support the hypothesis of a clonal effect on canopy openness. Understory biomass and canopy openness as low as 3.6 g m⁻² and 7.6% in 1 m² microplots were measured under clone MxB-915311 at the most productive site. This reduction of understory plant growth could compromise important buffer functions for water quality protection (runoff control, sediment trapping and surface soil stabilisation), particularly were concentrated runoff flow paths enter the buffer. On the other hand, tree buffers that maintain relatively low canopy openness could be interesting to promote native and wetland plant diversity. Significant positive relationships between canopy openness and introduced species richness (R ² = 0.46, p < 0.001) and cover (R ² = 0.51, p < 0.001) were obtained, while no significant relationship was observed between canopy openness and native (wetland) species richness and cover. These results suggest that planting riparian buffer strips of fast-growing trees can rapidly lead to the exclusion of shade-intolerant introduced species, typical colonisers of disturbed habitats such as riparian areas of pastures, while having no significant effect on native (wetland) diversity. Forest canopy created by the poplars was probably an important physical barrier controlling introduced plant richness and abundance in agricultural riparian corridors. A strong linear relationship (R ² = 0.73) between mean total species richness and mean introduced species richness was also observed, supporting the hypothesis that the richest communities are the most invaded by introduced species, possibly because of higher canopy openness, as seen at the least productive site (low poplar growth). Finally, results of this study highlight the need for a better understanding of relationships between tree growth, canopy openness, understory biomass and plant diversity in narrow strips of planted trees. This would be useful in designing multifunctional riparian buffer systems in agricultural landscapes.     

Impact of concentration of ellagitannins in oak wood on their levels and organoleptic influence in red wine

Some wood substances such as ellagitannins can be extracted during wine aging in oak barrels. The level of these hydrolyzable tannins in wine depends of some parameters of oak wood. Their impact on the organoleptic perception of red wine is poorly known. In our research, oak staves were classified in three different groups according to their level of ellagitannins estimated by NIRS (near infrared spectroscopy) online procedure (Oakscan). First, the ellagitannin level and composition were determine for each classified stave and an excellent correlation between the NIRS classification (low, medium and high potential level of ellagitannin) and the ellagitannin content estimated by HPLC-UV was found. Each different group of NIRS classified staves was then added to red wine during its aging in a stainless tank, and the extraction and evolution of the ellagitannins were monitored. A good correlation between the NIRS classification and the concentration of ellagitannins in red wine aging in contact with the classified staves was observed. The influence of levels of ellagitannins on the resulting wine perception was estimated by a trained judge's panel, and it reveals that the level of ellagitannins in wine has an impact on the roundness and amplitude of the red wine.     

Plant species extinction debt in a temperate biodiversity hotspot: Community, species and functional traits approaches

Destruction and fragmentation of (semi-) natural habitats are considered the main causes of biodiversity loss worldwide. Plant species may exhibit a slow response to fragmentation, resulting in the development of an extinction debt in fragmented plant communities. The detection of extinction debt is of primary importance in habitat conservation strategies. We applied two different approaches proposed in the literature to identify extinction debt in South-East Belgium calcareous grasslands. The first method compared species richness between stable and fragmented habitat patches. The second explored correlations between current species richness and current and past landscape configurations using multiple regression analyses. We subsequently examined results generated by both methods. In addition, we proposed techniques to identify species that are more likely to support extinction debt and associated functional traits. We estimated a respective extinction debt of approximately 28% and 35% of the total and specialist species richness. Similar results were obtained from both methods. We identified 15 threatened specialist species under the current landscape configuration. It is likely the landscape configuration no longer supports the species habitat requirements. We demonstrated that non-clonal species are most threatened, as well as taxa that cannot persist in degraded habitats and form only sparsely distributed populations. We discussed our results in light of other studies in similar habitats, and the overall implications for habitat conservation.     

Baseflow control on sediment flux connectivity: Insights from a nested catchment study in Central Mexico

In order to assess the extent of sediment connectivity between uplands and lowlands and to quantify the processes of in-channel deposition and remobilization, measurements of suspended sediment fluxes were conducted in a nested rural catchment of the Mexican Volcanic Belt. Data were collected over one year at three upland sites (3 to 12 km²) and two downstream stations (390–630 km²). Our results show that a structural discontinuity in the catchment (i.e. abrupt slope decrease at the junction between piedmonts and the alluvial plain from 2 to 10% to < 0.1%) could be compensated by functional continuity during floods. Direct conveyance of fine sediment to the outlet occurred when a high stream transport capacity was reached. Erosion of the streambed was observed on various occasions and accounted for up to 50% of the flux leaving the catchment during one event. Conversely, temporary in-channel storage was apparent on other occasions, amounting to up to 52% of the flux recorded upstream during one storm. These two distinct behaviours were approximately equally distributed along the rainy season and strongly driven by the extent of coupling between surface and subsurface water. This work indeed highlights the role of baseflow spatial variations in determining the extent of lowland sediment conveyance. Riverbed erosional processes occurred when large differences in pre-event baseflow values (i.e. at least a twofold longitudinal increase) were observed between the 5-km distant lowland stations. Our findings outline the importance of systematically taking into consideration the baseflow parameter in research focusing on fine sediment transport across scales.     

Genome-wide association mapping for root cone angle in rice

Background

Plant root systems play a major role in anchoring and in water and nutrient uptake from the soil. The root cone angle is an important parameter of the root system architecture because, combined with root depth, it helps to determine the volume of soil explored by the plant. Two genes, DRO1 and SOR1, and several QTLs for root cone angle have been discovered in the last 5 years.

Results

To find other QTLs linked to root cone angle, a genome-wide association mapping study was conducted on two panels of 162 indica and 169 japonica rice accessions genotyped with two sets of SNP markers (genotyping-by-sequencing set with approximately 16,000 markers and high-density-rice-array set with approximately 300,000 markers). The root cone angle of all accessions was measured using a screen protractor on images taken after 1 month of plant growth in the Rhizoscope phenotyping system. The distribution of the root cone angle in the indica panel was Gaussian, but several accessions of the japonica panel (all the bulus from Indonesia and three temperate japonicas from Nepal or India) appeared as outliers with a very wide root cone angle. The data were submitted to association mapping using a mixed model with control of structure and kinship. A total of 15 QTLs for the indica panel and 40 QTLs for the japonica panel were detected. Genes underlying these QTLs (+/?50 kb from the significant markers) were analyzed. We focused our analysis on auxin-related genes, kinases, and genes involved in root developmental processes and identified 8 particularly interesting genes.

Conclusions

The present study identifies new sources of wide root cone angle in rice, proposes ways to bypass some drawbacks of association mapping to further understand the genetics of the trait and identifies candidate genes deserving further investigation.

     

Evidence of genotype–diet interactions in the response of rainbow trout (Oncorhynchus mykiss) clones to a diet with or without fishmeal at early growth

This study examined the genetic variability and genotype × diet interactions during early growth (initial mean body weight 1.2 g) among seven heterozygous clones of rainbow trout, Oncorhynchus mykiss. The clones were hand-fed a diet containing either fishmeal or plant proteins during a 49-day trial divided into two periods (P1, 26 days, and P2, 23 days). Weight, variation of weight within clone, feed intake, feed efficiency and mortality were calculated for both periods.There was a highly significant effect of diet and of clone for all traits at both periods, except for feed efficiency and mortality at P1. Highly significant interactions between diet and clone were also recorded for all these traits, except for mortality at P1. The occurrence of genotype × diet interactions when feeding juvenile rainbow trout with an all plant-protein diet indicates that a highly performing genotype on a fishmeal diet may perform poorly when fed a plant-protein diet. Interactions were found for the two major determinants of growth, i.e. feed intake and feed efficiency, showing that the dietary response differs according to the genotype. Monitoring of the within-clone variability of weight showed that a plant-based diet is likely to enhance the overall phenotypic variance in a population, whatever its initial genetic variability.