Comparisons of quantitative trait locus mapping properties between two methods of recombinant inbred line development

Theoretical comparisons for quantitativetrait loci (QTL) mapping properties wereconducted among simulated recombinantinbred (RI) populations developed bysingle-hill (SH), complete bulk, and singleseed descent (SSD) procedures by MonteCarlo simulations based on variouspopulation sizes, heritabilities, and QTLeffects. Our simulations includedestimation of QTL effects, QTL positions,and statistical testing power in the RIpopulations by comparing the estimates withpreset values. The simulation resultsshowed that the single hill (SH) bulk andsingle seed descent RI populations weregenerally not significantly different withrespect to quality of estimated QTL effectsand positions. Furthermore, when each RIpopulation had 150 lines, each couldprovide desirable properties for QTLmapping. The results implied that a SH RIpopulation consisting of 75 or moreF₂-derived families with two lines perfamily (corresponding population size of150 or above) was appropriate for QTLmapping and was not significantly differentthan a SSD RI population of 150. Thus, theSH method could be used to develop largenumbers of RI lines for achieving betterresults in QTL mapping. Simulations alsoshowed that there was no significantdifference between means using SH methodswith 10 and 100 fruits per family. However, RI populations developed by thecomplete bulk method where F₂identities are lost were not suitable forQTL mapping.     

Innovative approaches to genome editing in avian species

The tools available for genome engineering have significantly improved over the last 5 years, allowing scientist to make precise edits to the genome. Along with the development of these new genome editing tools has come advancements in technologies used to deliver them. In mammals genome engineering tools are typically delivered into in vitro fertilized single cell embryos which are subsequently cultured and then implanted into a recipient animal.In avian species this is not possible, so other methods have been developed for genome engineering in birds. The most common involves in vitro culturing of primordial germ cells(PGCs), which are cells that migrate through the embryonic circulatory system to the developing gonad and colonize the gonad, eventually differentiating into the gonadocytes which produce either sperm or ova. While in culture the PGCs can be modified to carry novel transgenes or gene edits, the population can be screened and enriched, and then transferred into a recipient embryo. The largest drawback of PGC culture is that culture methods do not transfer well across avian species, thus there are reliable culture methods for only a few species including the chicken. Two newer technologies that appear to be more easily adapted in a wider range of avian species are direct injection and sperm transfection assisted gene editing(STAGE).The direct injection method involves injecting genome engineering tools into the circulatory system of the developing embryo just prior to the developmental time point when the PGCs are migrating to the gonads. The genome engineering tools are complexed with transfection reagents, allowing for in vivo transfection of the PGCs. STAGE utilizes sperm transfection to deliver genome engineering tools directly to the newly fertilized embryo. Preliminary evidence indicates that both methodologies have the potential to be adapted for use in birds species other than the chicken, however further work is needed in this area.     

Local macrophage proliferation, rather than recruitment from the blood, is a signature of TH2 inflammation

A defining feature of inflammation is the accumulation of innate immune cells in the tissue that are thought to be recruited from the blood. We reveal that a distinct process exists in which tissue macrophages undergo rapid in situ proliferation in order to increase population density. This inflammatory mechanism occurred during T helper 2 (T(H)2)-related pathologies under the control of the archetypal T(H)2 cytokine interleukin-4 (IL-4) and was a fundamental component of T(H)2 inflammation because exogenous IL-4 was sufficient to drive accumulation of tissue macrophages through self-renewal. Thus, expansion of innate cells necessary for pathogen control or wound repair can occur without recruitment of potentially tissue-destructive inflammatory cells.     

A dynamic model of metabolizable energy utilization in growing and mature cattle. III. Model evaluation

Component models of heat production identified in a proposed system of partitioning ME intake and a dynamic systems model that predicts gain in empty BW in cattle resulting from a known intake of ME were evaluated. Evaluations were done in four main areas: 1) net efficiency of ME utilization for gain, 2) relationship between recovered energy and ME intake, 3) predicting gain in empty BW from recovered energy, and 4) predicting gain in empty BW from ME intake. An analysis of published data showed that the net partial efficiencies of ME utilization for protein and fat gain were approximately 0.2 and 0.75, respectively, and that the net efficiency of ME utilization for gain could be estimated using these net partial efficiencies and the fraction of recovered energy that is contained in protein. Analyses of published sheep and cattle experimental data showed a significant linear relationship between recovered energy and ME intake, with no evidence for a nonlinear relationship. Growth and body composition of Hereford x Angus steers simulated from weaning to slaughter showed that over the finishing period, 20.8% of ME intake was recovered in gain. These results were similar to observed data and comparable to feedlot data of 26.5% for a shorter finishing period with a higher-quality diet. The component model to predict gain in empty BW from recovered energy was evaluated with growth and body composition data of five steer genotypes on two levels of nutrition. Linear regression of observed on predicted values for empty BW resulted in an intercept and slope that were not different (P < 0.05) from 0 and 1, respectively. Evaluations of the dynamic systems model to predict gain in empty BW using ME intake as the input showed close agreement between predicted and observed final empty BW for steers that were finished on high-energy diets, and the model accurately predicted growth patterns for Angus, Charolais, and Simmental reproducing females from 10 mo to 7 yr of age.     

The effect of individual liveweight and use of teaser rams prior to mating on the reproductive performance of ewe hoggets

AIM: To determine the effects of liveweight (LW) and use of teaser rams prior to mating on both the mating performance and pregnancy rate of ewe hoggets.

METHODS: Romney hoggets (n=841) were weighed and randomly assigned to one of two treatment groups; either exposed to seven harnessed, vasectomised (teaser) rams for 17 days prior to the breeding period (n=283); or not exposed to teaser rams (unteased, n=558). Harnessed Perendale rams were then introduced for two oestrous cycles. Using crayon marks, hoggets were identified as having been mated during the first 17 days only, during the second 17 days only, during both periods, or not mated. All mated hoggets were then scanned for pregnancy using ultrasound, 48 days after the end of the breeding period, and identified as being either non-pregnant, or as single-, twinor triplet-bearing.

RESULTS: Hoggets mated in either the first 17 days only or in both the first and second 17-day periods were heavier than those mated in the second period only (p<0.001). Those mated in the first or second 17-day period only, and those mated in both periods were all heavier prior to mating than those not mated at all (p<0.001). Twin-bearing hoggets were heavier than both their single-bearing and non-pregnant counterparts (p<0.001). A greater proportion of the teased hoggets were mated in the first 17 days only compared with unteased hoggets (62.6 vs 32.1%; p<0.001). In contrast, more of the unteased hoggets were marked in the second 17-day period only (p<0.001). A greater proportion of mated, unteased hoggets were found to be non-pregnant in comparison to their teased counterparts (17.8 vs 11.2%; p=0.02).

CONCLUSIONS: Heavier hoggets at breeding were more likely to be mated in the first 17 days of the breeding period and more likely to be twin-bearing. Use of teaser rams for 17 days prior to the breeding period increased the proportion of hoggets mated in the first 17 days, increased conception rates, and thus increased the proportion of pregnant hoggets. These results indicate that farmers should utilise teasers for 17 days prior to commencement of the breeding period and avoid mating hoggets that weigh below 36 kg.     

SSR markers for marker assisted selection of root-knot nematode (<Emphasis Type="Italic">Meloidogyne incognita</Emphasis>) resistant plants in cotton (<Emphasis Type="Italic">Gossypium hirsutum</Emphasis> L)

Cotton (Gossypium hirsutum L) cultivars highly resistant to the southern root-knot nematode (RKN) [Meloidogyne incognita (Kofoid and White) Chitwood] are not available. Resistant germplasm lines are available; however, the difficulty of selecting true breeding lines has hindered applied breeding and no highly resistant cultivars are available to growers. Recently, molecular markers on chromosomes 11 and 14 have been associated with RKN resistance, thus opening the way for marker assisted selection (MAS) in applied breeding. Our study aimed to determine the utility of these markers for MAS. Cross one was RKN resistant germplasm M240 RNR × the susceptible cultivar, FM966 and is representative of the initial cross a breeder would make to develop a RKN resistant cultivar. Cross two consists of Clevewilt 6 × Mexico Wild (PI563649), which are the two lines originally used to develop the first highly RKN resistant germplasm. Mexico Wild is photoperiodic. We phenotyped the F₂ of cross one for gall index and number of RKN eggs per plant and genotyped each plant for CIR 316 (chromosome 11) and BNL 3661 (chromosome 14). From this, we verified that MAS was effective, and the QTL on chromosome 14 was primarily associated with a dominant RKN resistance gene affecting reproduction. In the first F₂ population of cross two, we used MAS to identify 11 plants homozygous for the markers on chromosomes 11 and 14, and which also flowered in long days. Progeny of these 11 plants were phenotyped for RKN gall index and egg number and confirmed as RKN highly resistant plants. Generally about 7–10 generations of RKN phenotyping and progeny testing were required to develop the original RKN highly resistant germplasms. Our results show that commercial breeders should be able to use the markers in MAS to rapidly develop RKN resistant cultivars.     

Magic,Safe and Smart Model Applications at Integrated Monitoring Sites: Effects of Emission Reduction Scenarios

Three well-known dynamic acidification models (MAGIC, SAFE, SMART) were applied to data sets from five Integrated Monitoring sites in Europe. The calibrated models were used in a policy-oriented framework to predict the long-term soil acidification of these background forest sites, given different scenarios of future deposition of S and N. Emphasis was put on deriving realistic site-specific scenarios for the model applications. The deposition was calculated with EMEP transfer matrices and official emissions for the target years 2000, 2005 and 2010. The alternatives for S deposition were current reduction plans and maximum feasible reductions. For N, the NOx and NHy depositions were frozen at the present level. For NOx, a reduction scenario of flat 30% reduction from present deposition also was utilized to demonstrate the possible effects of such a measure. The three models yielded generally consistent results. The ‘Best prediction’-scenario (including the effects of the second UN/ECE protocol for reductions of SO2 emissions and present level for NOx-emissions), resulted in many cases in a stabilization of soil acidification, although significant improvements were not always shown. With the exception of one site, the ‘Maximum Feasible Reductions’ scenario always resulted in significant improvements. Dynamic models are needed as a complement to steady-state techniques for estimating critical loads and assessing emission reduction policies, where adequate data are available.     

Bosonic stimulation in the formation of a bose-einstein condensate

The formation of a Bose-Einstein condensate of a dilute atomic gas has been studied in situ with a nondestructive, time-resolved imaging technique. Sodium atoms were evaporatively cooled close to the onset of Bose-Einstein condensation and then suddenly quenched to below the transition temperature. The subsequent equilibration and condensate formation showed a slow onset distinctly different from simple relaxation. This behavior provided evidence for the process of bosonic stimulation, or coherent matter-wave amplification, crucial to the concept of an atom laser.