Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

Genomes of animals as different as sponges and humans show conservation of global architecture. Here we show that multiple genomic features including transposon diversity, developmental gene repertoire, physical gene order, and intron-exon organization are shattered in the tunicate Oikopleura, belonging to the sister group of vertebrates and retaining chordate morphology. Ancestral architecture of animal genomes can be deeply modified and may therefore be largely nonadaptive. This rapidly evolving animal lineage thus offers unique perspectives on the level of genome plasticity. It also illuminates issues as fundamental as the mechanisms of intron gain.     

Size class distribution and spatial pattern of Vitellaria paradoxa in relation to farmers' practices in Mali

The impact of human activities on size class distribution and spatial distribution of Vitellaria paradoxa (karité or shea butter tree) in the parklands of sub-Saharan Africa has not been reported in the literature. Two sites (Koumantou and Mperesso) in southern Mali and three treatments (cultivated field, fallow and forest) per site were involved in the present study. Results of a statistical test for random distribution showed that the spatial pattern of Vitellaria paradoxa became progressively aggregated from cultivated field to fallow and then to forest. A permanent aggregated pattern found at Koumantou was not found at Mperesso. A test of the independence of larger and smaller tree locations shows that size classes clump together at Koumantou but not at Mperesso. Results of the third test showed that in the cultivated field, auto-correlation was only observed at large scale. In the fallow the trend was towards negative correlation for both sites. In the forest, negative correlation was observed up to 20 m at Koumantou whereas at Mperesso, positive correlation was observed around 35 m and above 50 m. Site differences may be explained by the intensity of fruit production and recruitment, bound to rainfall and land use pressure. Greater regularity of the spatial pattern in cultivated field, then fallow, may be the result of human intervention.This revised version was published online in November 2005 with corrections to the Cover Date.     

An analysis of the pattern of genetic variation in Vitellaria paradoxa using RAPD markers

Vitellaria paradoxa C.F.Gaertn. is one of the most economically and socially important tree species in the Sudano-Sahelian region. Little is known of the pattern of variation within its natural range. Eight populations covering most of the natural range from Senegal to Uganda were sampled and leaves of 118 individual trees were collected. An analysis of molecular diversity was carried out using random amplified polymorphic DNA (RAPD) markers. Fifteen random primers generated 67 polymorphic and 15 monomorphic RAPD loci ranging from size 1670 bp to 280 bp. Shannon's diversity index varied from Central Africa/Ndele (0.374) to Uganda/Amoya (0.350) but the differences between populations were smaller than the population standard errors. Correspondence analysis of unrooted neighbour-joining trees suggested that genetic distances between populations were correlated with geographic distances. This trend was confirmed by a Mantel test giving a coefficient of correlation between genetic and geographic distances of R = 0.88 (P = 0.0001). Result of AMOVA (analyses of molecular variance) showed that 14.8% (P = 0.002) of the RAPD variation was distributed among populations. Nested analysis of variance indicated that variance between the western and eastern groups of population represented 8.7% (P = 0.001) of the total variation and the variation amongst populations within group was 9.5% (P = 0.001). Eighty two percent of the variation was explained by variation amongst individuals within populations. The origin of genetic structure and level of diversity may be explained by the glacial refugia, the biological traits of Vitellaria paradoxa and by the impact of semi-domestication. Based on these results, sampling options of the natural populations are suggested for in or ex situ conservation. For the development of Vitellaria paradoxa breeding population, the sampling should consist of many individual trees selected within a few populations to capture a large proportion of variation.This revised version was published online in November 2005 with corrections to the Cover Date.     

Specific GABAA circuits for visual cortical plasticity

Weak inhibition within visual cortex early in life prevents experience-dependent plasticity. Loss of responsiveness to an eye deprived of vision can be initiated prematurely by enhancing gamma-aminobutyric acid (GABA)-mediated transmission with benzodiazepines. Here, we use a mouse "knockin" mutation to alpha subunits that renders individual GABA type A (GABA(A)) receptors insensitive to diazepam to show that a particular inhibitory network controls expression of the critical period. Only alpha1-containing circuits were found to drive cortical plasticity, whereas alpha2-enriched connections separately regulated neuronal firing. This dissociation carries implications for models of brain development and the safe design of benzodiazepines for use in infants.     

Landscape composition influences roe deer habitat selection at both home range and landscape scales

Understanding how patterns of habitat selection vary in relation to landscape structure is essential to predict ecological responses of species to global change and inform management. We investigated behavioural plasticity in habitat selection of roe deer (Capreolus capreolus) in relation to variable habitat availability across a heterogeneous agricultural landscape at the home range and landscape scales. As expected, woodland was heavily selected, but we found no functional response for this habitat, i.e. no shift in habitat selection with changing habitat availability, possibly due to the presence of hedgerows which were increasingly selected as woodlands were less abundant. Hedgerows may thus function as a substitutable habitat for woodlands by providing roe deer with similar resources. We observed a functional response in the use of hedgerows, implying some degree of landscape complementation between hedgerows and open habitats, which may in part compensate for lower woodland availability. We also expected selection for woodland to be highest at the wider spatial scale, especially when this habitat was limiting. However, our results did not support this hypothesis, but rather indicated a marked influence of habitat composition, as both the availability and distribution of resources conditioned habitat selection. There was no marked between-sex difference in the pattern of habitat selection at either scale or between seasons at the landscape scale, however, within the home range, selection did differ between seasons. We conclude that landscape structure has a marked impact on roe deer habitat selection in agricultural landscapes through processes such as landscape complementation and supplementation.     

Echinococcus multilocularis in dogs from two French endemic areas: no evidence of infection but hazardous deworming practices

The life cycle of the zoonotic parasite Echinococcus multilocularis is predominantly sylvatic, involving foxes as definitive hosts infected by predation of rodents, the intermediate hosts. The North-Eastern French departments of Meuse and Haute-Sa?ne are highly endemic, with an estimated fox prevalence of 41% and 36% respectively. Although most of the parasites' biomass occurs in foxes, domestic dogs can also be infected, leading to a major risk of human infection due to the close proximity of dogs and owners. In the present study, dog faeces were collected after praziquantel treatment provided by veterinarians. In all, 860 faecal samples were collected throughout Meuse (n=493) and Haute-Sa?ne (n=367). Intestinal helminth eggs were isolated from the faeces using a flotation technique and observed by microscopy. Parasite species were identified in samples positive for taeniid eggs by sequence analysis after PCR amplification. To study the factors associated with infestation, each sample was linked to a questionnaire filled in by the dog owners. Taeniid eggs were observed in seven faecal samples (0.8%) but none of them were positive for E. multilocularis. Thus, the apparent prevalence of E. multilocularis in dog populations is lower than 1.00% for Haute-Sa?ne and lower than 0.75% for Meuse. In Haute-Sa?ne, a high proportion of dogs observed suspected preying on rodents were not dewormed monthly. In endemic areas, these dogs must be considered at risk of transmitting E. multilocularis to humans.     

Evaluation and comparison of size–density relationships for pure even-aged stands of ash (Fraxinus excelsior L.), beech (Fagus silvatica L.), oak (Quercus petraea Liebl.), and sycamore maple (Acer pseudoplatanus L.)

• Introduction   

Size-density relationships define the maximum number of stems that even-aged stands of a given species can hold in relation to the mean size of trees. They are used to derive stand density measures and are useful tools used to control tree mortality.     

Fatty acid and tocopherol patterns of variation within the natural range of the shea tree (Vitellaria paradoxa)

The shea tree, Vitellaria paradoxa, is one of the most economically and culturally important indigenous tree species in the Sudano-Sahelian region. Its seeds contain a vegetable fat, internationally known as shea butter, which is widely used in edible, cosmetic and pharmaceutical sectors. Based on samples from 456 trees distributed in 17 locations across the species natural range from Senegal to Uganda, the fatty acid and tocopherol variation, and its relationship with geographic and climatic variables, was assessed in order to address the pattern and the origin of this variation across the natural range. Significant differences between Western and Eastern regions for oleic, stearic acid, saturated–unsaturated acid ratio and γ-tocopherol were identified that it is postulated maybe a result of genetic drift due to the evolutionary history of shea tree populations. Within regions the difference among stands was significant for most constituents; however the major part of the variation was observed among trees within stand (53–90 %). Relationships with climatic variables were not verified, weakening evidence for clinal variation hypotheses suggested by previous studies.