Pathogenesis of Eutypa lata in grapevine: identification of virulence factors and biochemical characterization of cordon dieback

Eutypa lata is a vascular pathogen of woody plants. In the present study we (i) determined which component(s) of the cell wall polymers were degraded in naturally infected grapevines and in artificially inoculated grape wood blocks; (ii) compared the pattern of wood decay in the tolerant grape cv. Merlot versus the susceptible cv. Cabernet Sauvignon; and (iii) identified secondary metabolites and hydrolytic enzymes expressed by E. lata during wood degradation. Biochemical analyses and a cytochemical study indicated that glucose-rich polymers were primary targets of E. lata. Structural glucose and xylose of the hemicellulose fraction of the plant cell wall and starch were depleted in infected woods identically in both cultivars. Moreover, the more tolerant cv. Merlot always had more lignin in the wood than the susceptible cv. Cabernet Sauvignon, indicating that this polymer may play a role in disease resistance. In vitro assays demonstrated the production by E. lata of oxidases, glycosidases and starch degrading enzymes. Phytotoxic secondary metabolites were also produced but our data suggest that they may bind to the wood. Finally, we demonstrated that free glucose in liquid cultures repressed primary but not secondary metabolism.     

Immunological and gene expression responses to a Salmonella infection in the chicken intestine

Besides infection in humans, Salmonella enteritidis can also cause serious illness in young chickens. However, the genetic and immunological parameters important for the disease in chickens are not well characterized. In this study, processes in the chicken intestine in response to a Salmonella infection were investigated in two different chicken lines. One-day-old chickens were orally infected with Salmonella. T-cell subpopulations, phagocytic properties of intestinal mononuclear cells and RNA expression levels of the jejunum were investigated. The two chicken lines differed in the amount of cfu in the liver and growth retardation after the infection. Differences in phagocytic activity of intestinal mononuclear cells were found between control and Salmonella infected chickens. The number of CD4+ T-cells of the intestine decreased after the Salmonella infection in one chicken line, while the number of CD8+ T-cells increased in both chicken lines, but the time post infection of this increase differed between the lines. In one chicken line the expression levels of the genes carboxypeptidase M and similar to ORF2 decreased after the Salmonella infection, which might be related to a decrease in the amount of macrophages. With the microarray, ten genes were found that were regulated in only one of the chicken lines, while we found six genes regulated in response to the infection in both chicken lines. So differences in genetic background of the chickens influence the intestinal host response of the Salmonella infection as observed by phagocytic activity, gene expression and changes in the number of T-cell subpopulations and macrophages.     

Influence of Prescribed Fire on Ecosystem Biomass,Carbon, and Nitrogen in a Pinyon Juniper Woodland

Increases in pinyon and juniper woodland cover associated with land-use history are suggested to provide offsets for carbon emissions in arid regions. However, the largest pools of carbon in arid landscapes are typically found in soils, and aboveground biomass cannot be considered long-term storage in fire-prone ecosystems. Also, the objectives of carbon storage may conflict with management for other ecosystem services and fuels reduction. Before appropriate decisions can be made it is necessary to understand the interactions between woodland expansion, management treatments, and carbon retention. We quantified effects of prescribed fire as a fuels reduction and ecosystem maintenance treatment on fuel loads, ecosystem carbon, and nitrogen in a pinyon–juniper woodland in the central Great Basin. We found that plots containing 30% tree cover averaged nearly 40 000 kg · ha^?1 in total aboveground biomass, 80 000 kg · ha^?1 in ecosystem carbon (C), and 5 000 kg · ha^?1 in ecosystem nitrogen (N). Only 25% of ecosystem C and 5% of ecosystem N resided in aboveground biomass pools. Prescribed burning resulted in a 65% reduction in aboveground biomass, a 68% reduction in aboveground C, and a 78% reduction in aboveground N. No statistically significant change in soil or total ecosystem C or N occurred. Prescribed fire was effective at reducing fuels on the landscape and resulted in losses of C and N from aboveground biomass. However, the immediate and long-term effects of burning on soil and total ecosystem C and N is still unclear.     

Comparison of leaf stomatal conductance models for typical desert riparian phreatophytes in northwestern China

Stomatal regulation plays a vital role related to plant functioning, especially with a limited water supply. Estimating the leaf stomatal conductance (g _s) is pivotal for further estimation of transpiration as well as energy and mass balances between air and plant in arid regions. Based on successive measurements of leaf gas exchange of two typical desert riparian phreatophytes, Tamarix ramosissima Ledeb., and Populus euphratica Oliv., we estimated g _s using the empirical, optimal, and mechanistic models. Measurements were conducted on T. ramosissima during the growing seasons in 2011 and 2012 and P. euphratica in 2013 and 2014. Estimated values were compared with those measured by the portable open-path gas exchange measurement system. Results indicated that Ye’s mechanistic model always performed best among all the g _s models tested here with R ² values of 0.878 and 0.723 for T. ramosissima in 2011 and 2012, and 0.625 and 0.867 for P. euphratica in 2013 and 2014, respectively. Meanwhile, Medlyn’s optimal model exhibited the least reliable performance with R ² at values of 0.514 and 0.398 for T. ramosissima in 2011 and 2012, and 0.385 and 0.101 for P. euphratica in 2013 and 2014, respectively. Empirical models may not be suitable for application in novel situations because they have been developed from experimental observations rather than from any mechanistic understanding or theory of stomatal behavior. Consequently, the application of Ye’s mechanistic model will be of great significance for the modeling and up-scaling of g _s in extremely arid regions in the future.     

The Impact of Atmospheric Deposition of Non-Acidifying Substances on the Quality of European Forest Soils and the North Sea

In the pilot study ESQUAD the impact of atmospheric deposition of three heavy metals (cadmium, copper and lead) and two persistent organic pollutants (benzo(a)-pyrene and lindane) on the quality of European soils and seawater has been calculated. Calculations have been made of atmospheric transport and deposition using a detailed emissions database for Europe. This enabled deposition maps to be produced to a resolution of approximately 50 km. The distribution of pollutant concentrations in forest soils was calculated for each grid cell using a database of soil property parameters in Europe. For the North Sea, a model was used to map long-term concentrations in water and sediment, which are due to atmospheric deposition and other, non-atmospheric sources. The model calculations allowed detailed comparisons of deposition fluxes and concentrations of the substances studied with critical loads and environmental quality threshold values, including critical loads. Although significant uncertainties were identified, the study gives insight in how threshold exceedance rates in Europe relate to pollutant type, threshold type, environmental compartment and chemophysical phase (adsorbed, dissolved). For all pollutants and for all compartments exceedances were calculated for at least some of the quality thresholds that were chosen.     

Economic trade-offs to limit nonpoint sources of agricultural pollution

A national model has been built which allows analysis of physical and economic trade-offs as soil loss per acre is limited to specified levels in each major land group of the nation. Crop variables with their associated conservation practices are developed for each of 1891 land groups in 223 agricultural producing regions and 51 water supply regions. The regions and soil groups are made interdependent through regional commodity demands and a transportation submodel. Hence, changes in cropping systems and erosion control practices in one region are simultaneously expressed in effects on other regions. Soil loss limits are set at 10, 5, and 3 t per acre. The 10 t limit does not have a large impact on interregional production patterns and farm comodity prices. However, the 5 and 3 t limits, either singularly or in combination with different export levels, cause rather marked increases in commodity prices. Also at limits of 5 and 3 t, considerable shifts take place among regions in the crops grown and the erosion control methods used. Regions with erosive soils sacrificed in reduced income; regions with level soils can crop more intensely and gain greater income. Conservation practices such as reduced tillage increase the amount of pesticides needed in some regions and pose special environmental problems. The South Atlantic region is affected most by soil loss limits to control nonpoint pollution. The Great Plains regions with more level land and limited rainfall are affected least.     

Natural variation in fruit characteristics,seed germination and seedling growth of <Emphasis Type="Italic">Adansonia digitata</Emphasis> L. in Benin

Adansonia digitata (baobab tree), a multipurpose tree species, occurs throughout semi-arid and arid zones of Africa. Its survival is, however, threatened by bush fire, over-exploitation, grazing and a lack of natural regeneration. The extent of variation in fruit characteristics, seed germination and seedling traits of the baobab tree in Benin, was evaluated at climatic zone level. 1,200 fruits were sampled in each of the three climatic zones of Benin for morphological assessment and to assess germination rate and seedling growth dynamics according to the climatic zones, the used substrate and the scarification of the seed coat. There were significant differences in fruit characteristics not only between climatic zones but also between individuals from the same zone and within-trees. Using mechanical scarification on freshly-collected baobab seeds negatively affected the germination rate of baobab seeds sampled in the Guinean and Sudano-Guinean zones of Benin. The best-germination rate was recorded for non-treated seeds from the Guinean zone, up to 57% on day 25. All seeds germinated best on the sand substrate, but supplying organic matter promoted further seedling growth after 11 days of germination. Based on these observations we propose some strategies for efficient ex situ conservation of baobab in Benin.     

A climatic risk analysis of the threat posed by the South American leaf blight (SALB) pathogen <Emphasis Type="Italic">Microcyclus ulei</Emphasis> to major rubber producing countries

In 2010, symptoms of cobweb disease were observed on cultivated Pleurotus eryngii crops in Spain. Based on morphological and genetic analyses, the causal agent of cobweb was identified as Cladobotryum mycophilum. Pathogenicity tests on fruit bodies were performed using conidial suspensions of three C. mycophilum isolates. The causal agent was re-isolated in 80–85 % of the fruit bodies inoculated internally and 15–40 % of those fruit bodies inoculated on the cap surface. The results pointed to a certain resistance of the P. eryngii cap surface to the mycelium of C. mycophilum. Two cropping trials inoculated with C. mycophilum were set up to evaluate the pathogenicity of the causal agent of cobweb in two casings. At the end of the growth cycle, 50–60 % of the inoculated blocks cased with mineral soil, and 20–33 % of the inoculated blocks cased with black peat showed cobweb symptoms. This difference in the appearance of the disease and its aggressiveness may be partly explained by different electrical conductivity values of the casing materials used. In vitro sensitivity of the C. mycophilum isolates and P. eryngii strains against four fungicides (chlorothalonil, prochloraz-Mn, thiabendazole and thiophanate-methyl) was assessed in radial growth experiments on fungicide-amended media. The most effective fungicides for inhibiting the in vitro growth of C. mycophilum were prochloraz-Mn and chlorothalonil, while prochloraz-Mn was also the most selective fungicide between P. eryngii and C. mycophilum, and chlorothalonil was the most toxic fungicide against the P. eryngii mycelium.     

The sounds of silence: regime shifts impoverish marine soundscapes

Context

Regime shifts are well known for driving penetrating ecological change, yet we do not recognise the consequences of these shifts much beyond species diversity and productivity. Sound represents a multidimensional space that carries decision-making information needed for some dispersing species to locate resources and evaluate their quantity and quality.

Objectives

Here we assessed the effect of regime shifts on marine soundscapes, which we propose has the potential function of strengthening the positive or negative feedbacks that mediate ecosystem shifts.

Methods

We tested whether biologically relevant cues are altered by regime shifts in kelp forests and seagrass systems and how specific such shifted soundscapes are to the type of driver; i.e. local pollution (eutrophication) vs. global change (ocean acidification).

Results

Here, we not only provide the first evidence for regime-shifted soundscapes, but also reveal that the modified cues of shifted ecosystems are similar regardless of spatial scale and type of environmental driver. Importantly, biological sounds can act as functional cues for orientation by dispersing larvae, and observed shifts in soundscape loudness may alter this function.

Conclusions

These results open the question as to whether shifted soundscapes provide a functional role in mediating the positive or negative feedbacks that govern the arrival of species associated with driving change or stasis in ecosystem state.