Fate and effects of insect-resistant Bt crops in soil ecosystems

Recent applications of biotechnology, especially genetic engineering, have revolutionized crop improvement and increased the availability of valuable new traits. A current example is the use of the insecticidal Cry proteins from the bacterium, Bacillus thuringiensis (Bt), to improve crops, known as Bt crops, by reducing injury from various crop pests. The adoption of genetically modified (GM) crops has increased dramatically in the last 11 years. However, the introduction of GM plants into agricultural ecosystems has raised a number of questions, including the ecological impact of these plants on soil ecosystems. Crop residues are the primary source of carbon in soil, and root exudates govern which organisms reside in the rhizosphere. Therefore, any change to the quality of crop residues and rhizosphere inputs could modify the dynamics of the composition and activity of organisms in soil. Insect-resistant Bt crops have the potential to change the microbial dynamics, biodiversity, and essential ecosystem functions in soil, because they usually produce insecticidal Cry proteins through all parts of the plant. It is crucial that risk assessment studies on the commercial use of Bt crops consider the impacts on organisms in soil. In general, few or no toxic effects of Cry proteins on woodlice, collembolans, mites, earthworms, nematodes, protozoa, and the activity of various enzymes in soil have been reported. Although some effects, ranging from no effect to minor and significant effects, of Bt plants on microbial communities in soil have been reported, using both culturing and molecular techniques, they were mostly the result of differences in geography, temperature, plant variety, and soil type and, in general, were transient and not related to the presence of the Cry proteins. The respiration (i.e., CO₂ evolution) of soils cultivated with Bt maize or amended with biomass of Bt maize and other Bt crops was generally lower than from soils cultivated with or amended with biomass of the respective non-Bt isolines, which may have been a result of differences in chemical composition (e.g., the content of starch, soluble N, proteins, carbohydrates, lignin) between Bt plants and their near-isogenic counterparts. Laboratory and field studies have shown differences in the persistence of the Cry proteins in soil, which appear to be the result primarily of differences in microbial activity, which, in turn, is dependent on soil type (e.g., pH, clay mineral composition, other physicochemical characteristics), season (e.g., temperature, water tension), crop species (e.g., chemical composition, C:N ratio, plant part), crop management practices (e.g., till vs. no-till), and other environmental factors that vary with location and climate zones. This review discusses the available data on the effects of Cry proteins on below-ground organisms, the fate of these proteins in soil, the techniques and indicators that are available to study these aspects, and future directions.     

Bio‐economic efficiency of creep supplementation of forage legumes or concentrate in pasture‐based lamb production system

A 2‐year study in the Central Anatolian Region of Turkey compared the performance of pasture‐fed suckling lambs and their dams, set‐stocked on grass‐legume pastures supplemented either with forage legumes or concentrate through a creep grazing/feeding system in a randomized block design. The treatments included continuous pasture grazing + creep grazing alfalfa; continuous pasture grazing + creep grazing birdsfoot trefoil; continuous pasture grazing + creep feeding concentrate (170 g kg^?1 CP; 11.3 ME MJ kg^?1 DM); and continuous grazing without creep feeding (control). In both years, creep feeding/grazing commenced in early June following a 42‐day pasture grazing period (period 1) and continued until mid‐summer for two separate periods of 21 days each (periods 2 and 3). Creep‐supplemented lambs grew faster (p < .001) than those that grazed pasture alone, with no significant difference across all creep supplementation treatments. Across the years, the lambs grew at 223 and 161 g per head day^?1 for creep‐supplemented and control groups respectively. None of the lamb feeding strategies affected the ewe liveweight gains (p > .05). Results from a bio‐economic optimization model, however, showed that supplementing the pasture with birdsfoot trefoil and alfalfa in periods 2 and 3, respectively, maximized economic returns with an extra profit of US$88.83 per lamb above those that grazed the pasture alone.     

Comparison of extractive components in muscle and liver of three Loliginidae squids with those of one Ommastrephidae species

Extractive components were determined for the mantle muscle and liver of three species of Loliginidae squid, Sepioteuthis lessoniana, Loligo bleekeri, and L. edulis, and one species of Ommastrephidae, Todarodes pacificus, as a control. Total free amino acid levels and the major free amino acids in muscle, taurine, proline, glycine, alanine, and arginine, were significantly higher in Loliginidae squids than in T. pacificus. The main nucleotide was adenosine 5′-monophosphate, which did not differ significantly between species. Malate was the organic acid found in muscle in highest concentrations. The muscle of these species contained a large amount of trimethylamine oxide. A large amount of glycine betaine was also detected in the muscle, but showed no large species difference. From these results, the muscle of Loliginidae species is considered to have a much sweeter taste than that of T. pacificus. Compared with muscle, squid liver was characteristic with high contents of taurine, glutamate, bitter amino acids, succinate, propionate, trimethylamine, and glycine betaine, and with low contents of sweet amino acids, arginine, nucleotides, malate, and trimethylamine oxide. These results suggest that squid liver is characterized by a complicated taste containing umami, bitterness, sourness, fishy flavor, and less sweetness.     

Instability of ovine babesiosis in an endemic area in Turkey

This study was designed to determine the endemic status of Babesia ovis in sheep in Turkey. A total of 2000 sheep, from different age groups (i.e. 0-3, 4-6, 6-9, 10-12, and >12 months), were selected randomly from 132 sheep flocks. The presence of specific antibodies against B. ovis was diagnosed by indirect fluorescent antibody test (IFAT). A total of 843 (42.15%) serum samples were determined to be positive. The seropositivity rates in the age groups stated above were 31.90, 31.64, 47.69, 40.22, and 52.99%, respectively. The endemic status of the disease was determined by calculating the inoculation rate (h) of each group. The h value for each group was determined to be lower than 0.005, which revealed that the endemic status of B. ovis was instable. This report may indicate the necessity of vaccination.     

Best timing for glyphosate treatments and possible combinations with pre and post-emergence weed control practices in no-till maize

Use of reduced and no-tillage systems has increased in recent years due to concerns for ecological and economic sustainability of agricultural production. Effective weed control is a serious concern in reduced tillage production. This study was conducted to investigate weed control practices in reduced and no-till maize production. The most effective timing of glyphosate application, either before or after sowing, was investigated in combination with pre-emergence application of acetochlor (840 g a.i/L), post-emergence application of foramsulfuron (22.5 g a.i/L), and two hoeing treatments. The treatments were maintained on the same plots during 2011 and 2012 to evaluate the cumulative effects of the treatments. Main plot treatments consisted of four timings of glyphosate application: 20 or 10 days before sowing, day of sowing, 5 days after sowing, and an untreated control. Sub-plot treatments were: pre- plus post-emergence herbicides, pre-emergence herbicide plus rotary hoeing, post-emergence herbicide plus rotary hoeing, and post-emergence herbicide plus two hoeing treatments (rotary and lister hoe). In the main plots, the lowest weed biomass was produced in glyphosate treatments at sowing and 5 days after sowing; the highest biomass was produced in control plots and in the plots with glyphosate treatments 20 days before sowing. In the sub-plots, the greatest weed biomass was produced in plots with two hoeing treatments (rotary and lister hoe). Glyphosate treatments at sowing and post-emergence herbicide treatment combinations produced the best weed control. Economic analysis revealed that pre-sowing, non-selective herbicide treatments provided a slight increase in net profit. Mechanical hoeing decreased net income due to increased production costs. The highest income was obtained from the pre-emergence plus post-emergence herbicide treatment combinations with no glyphosate.     

Prediction of wood density breeding values of Pinus taeda elite parents from unbalanced data: A method for adjustment of site and age effects using common checklots

? Wood density of elite parents of loblolly pine (Pinus taeda L.) was investigated in 6 to 18 year-old progeny trials. The sampling was carried out separately in seven testing regions in the southeastern US. A checklot was the only connection between elite parents planted at different trials in a testing region.

? We used a data normalization method suggested for unbalanced designs in cDNA microarray experiments to remove confounding site and age effects using the checklot as a reference sample. Wood density breeding values of parents were predicted by fitting a linear mixed model to the normalized data.

? Using the reference samples to remove site and age effects appears to be an effective method for analysis of unbalanced progeny tests data. In general, wood density (kg/m³) decreased from coastal to inland plantings and from the southern to the northern planting. Considerable genetic variation for wood density was detected among these fast-growing elite parents in six of seven testing regions, with half-sib family mean heritabilities ranging from 0.71 to 0.97 within a testing region. With the exception of two regions, checklots were stable across trials in a region, based on regressing the checklot means on trial means.

     

Genetic differentiation in <Emphasis Type="Italic">Pinus brutia</Emphasis> Ten. using molecular markers and quantitative traits: the role of altitude

Context   

Turkish red pine (Pinus brutia Ten.) is widespread in the eastern Mediterranean Basin. In the late 1970s, four common gardens were established along steep altitudinal transects extending from the coast to about 1,200 m in the Taurus Mountains (Antalya, Turkey).     

Genomic selection in forest tree breeding: the concept and an outlook to the future

Using large numbers of DNA markers to predict genetic merit [genomic selection (GS)] is a new frontier in plant and animal breeding programs. GS is now routinely used to select superior bulls in dairy cattle breeding. In forest trees, a few empirical proof of-concept studies suggest that GS could be successful. However, application of GS in forest tree breeding is still in its infancy. The major hurdle is lack of high throughput genotyping platforms for trees, and the high genotyping costs, though, the cost of genotyping will likely decrease in the future. There has been a growing interest in GS among tree breeders, forest geneticists, and tree improvement managers. A broad overview of pedigree reconstruction and GS is presented. Underlying reasons for failures of marker-assisted selection were summarized and compared with GS. Challenges of GS in forest tree breeding and the outlook for the future are discussed, and a GS plan for a cloned loblolly pine breeding population is presented. This review is intended for tree breeders, forest managers, scientist and students who are not necessarily familiar with genomic or quantitative genetics jargon.