pH and substrate regulation of nitrogen and carbon dynamics in forest soils in a karst region of the upper Yangtze River basin, China

Nitrogen (N) is the most limiting nutrient for forest development. In this study, using a natural pH gradient, N and carbon (C) mineralization was investigated and the effects of soil pH as well as the total C and N contents and the soil C/N ratio were evaluated in forest soils after mountain closure in a karst region. The N availability was poor based on the low N mineralization potential (N ₀) and the low active fraction of soil total N (N ₀/total N), while high microbial decomposition activity was indicated by a high mineralization rate constant (k _N). N ₀ was positively correlated with soil pH as well as the total C and N contents. Additionally, multiple regression analysis revealed that total CN (the product of the soil total C and total N contents) and the C/N ratio had more significant effects on N ₀ than soil pH. In contrast, the mineralization rate constants k _N and k _C were positively affected by soil pH. The results indicated that N availability was regulated by soil organic matter (SOM), while microbial activity was restricted by soil pH. Also, the lack of nitrification and the high C ₀/N ₀ ratio observed at soil pH <5.5 may be a strong indicator of alterations to the microbial composition prompted by severe soil acidification. Further research is required to determine the changes in soil microbial composition with the drop in soil pH and their effects on SOM decomposition and nutrient availabilities.     

Sustainable site productivity and nutrient management in a short rotation plantation of Gmelina arborea in East Kalimantan,Indonesia

New Forests - Sustainable Forest Management (SFM) requires information on plant growth and nutrient dynamics in forest ecosystems. To obtain fundamental information for SFM in short-rotation...     

Assessing the diversity of dung beetle assemblages utilizing Japanese monkey feces in cool-temperate forests

Ecological investigation of the distribution and composition of dung beetle species utilizing feces of wild mammals has rarely been attempted, especially in cool-temperate forests. In this study we recorded and evaluated the community structure of dung beetle species utilizing feces of Japanese monkeys (Macaca fuscata) by conducting a macro-scale inventory survey in the northeastern Shirakami Mountains, located in the northernmost part of mainland Japan. Moreover, to assess the effect of human-induced forest disturbance on species assemblages in this cool-temperate area, we also carried out field sampling using pitfall traps baited with monkey feces in primary forests, secondary forests, and coniferous plantations, during every season except winter. Our findings were: (1) 14 dung beetle species comprising eight dwellers and six tunnelers utilized monkey feces; (2) Aphodius eccoptus was the core species in dung beetle assemblages attracted to the feces during spring and summer; (3) the frequency of occurrence of every species was extremely high in spring; and (4) human-induced forest disturbance did not increase species richness or biomass in cool-temperate forests.     

Tolerance of Japanese larch to drought is modified by nitrogen and water regimes during cultivation of container seedlings

Improving drought tolerance of container seedlings of Japanese larch is of high importance to afforestation. We hypothesized that adequate nitrogen (N) and limited water supply would increase the tolerance of container seedlings to water-deficit stress, circumventing photoinhibition, by means of (i) enhanced photosynthetic capacity with higher leaf N and (ii) decreased water loss from leaves with lower biomass allocation into aboveground parts. Container seedlings of Japanese larch were grown under the treatment combinations of adequate (+?N: 300 mg N container^?1) or limited (??N: 150 mg N container^?1) N and adequate (+?W: daily irrigation) or limited (??W: twice-a-week irrigation) water. Then, seedlings were subjected to a progressive drought treatment. Higher leaf N was observed in container seedlings grown under?+?N and???W. During progressive drought, lower stomatal conductance and net photosynthetic rate were observed in leaves with higher leaf N at a given predawn leaf water potential. Furthermore, the maximum efficiency of PSII photochemistry (F_v/F_m) was lower in leaves with higher leaf N, suggesting that higher leaf N might impair intrinsic tolerance to drought at the leaf level contrary to expectations. Conversely,???N and???W seedlings with lower shoot biomass delayed soil drying as a whole-plant response via a reduction in leaf transpiration, leading to delayed photoinhibition as indicated by a decline in F_v/F_m. To circumvent stress at the initial stage of water deficit, lower leaf N via limited N regime and smaller shoot biomass driven by limited N and water regimes would be important.

     

cDNA cloning and primary structure comparison of tauropine dehydrogenase and β-alanopine dehydrogenase from the limpet <Emphasis Type="Italic">Cellana grata</Emphasis>

The primary structures of β-alanopine dehydrogenase (β-AlDH) and tauropine dehydrogenase (TaDH) from the limpet Cellana grata were determined by amino acid sequence analysis and complementary DNA (cDNA) cloning. β-AlDH and TaDH cDNAs comprised 1,479 nucleotides and 1,444 nucleotides, respectively, and both included an open reading frame of 1,206 nucleotides corresponding to 402 amino acids. The enzymes showed very high homology, with 96% amino acid identity. These enzymes were homologous to other marine invertebrate opine dehydrogenases (OpDHs), except TaDH of the marine sponge Halichondria japonica. The highest homologies were to alanopine dehydrogenase from Fusitriton oregonensis, being 57% for both enzymes. A phylogenetic tree constructed on the basis of marine invertebrate OpDHs and developed using a sequence distance method and neighbor-joining algorithm showed a tendency for the classification of animals from taxonomically derived evolutionary trees. Additionally, Cellana grata OpDHs belong to the same group as the Gastropoda OpDHs. This represents the first report concerning the primary structure of marine invertebrate β-AlDH, and primary structure comparisons of clearly different enzymes from the same species.     

Effect of the methoxyiminoacetamide fungicide,SSF129, on respiratory activity in Botrytis cinerea

(E)-2-Methoxyimino-N-methyl-2-[2-(2,5-dimethylphenoxymethyl)phenyl]acetamide (SSF129) has been developed as a broad-spectrum systemic fungicide for control of cereal and fruit diseases. This compound inhibited NADH-oxidation by submitochondrial particles from mycelial cells of Botrytis cinerea, with an EC₅₀ value of 14.5 nM , due to blockage of electron transport through the cytochrome bc₁ complex in the mitochondrial respiratory chain. However, SSF129 did not suppress, but rather increased, oxygen consumption by mycelial cells of the fungus. This was because mycelial cells contain an alternative oxidase protein and the cells have the ability to rapidly switch electron flux from the main cytochrome pathway to the alternative pathway on blockage of the former by SSF129. The alternative pathway of the mycelia seems not to be operative when the cytochrome pathway is functional. Naturally occurring flavonoids inhibited the alternative oxidase of the mycelial cells in a dose-dependent manner, with EC₅₀ values of 68.4 µM for flavone and 63.7 µM for flavanone. These observations suggested that plant components play an important role in control of gray mould by SSF129. © 1999 Society of Chemical Industry     

Measurements of density contrast and sound-speed contrast for target strength estimation of Neocalanus copepods (Neocalanus cristatus and Neocalanus plumchrus) in the North Pacific Ocean

The mass density and sound-speed contrasts against surrounding seawater (g and h, respectively) of Neocalanus copepods (N. cristatus and N. plumchrus) were measured in 2006 and 2007 to compute the theoretical target strength (TS). The values of g ranged from 0.997 to 1.009 in N. cristatus and from 0.995 to 1.009 in N. plumchrus. There were no correlations between prosome length (PL) and g. The values of h ranged from 1.006 to 1.021 in N. cristatus and from 1.013 to 1.025 in N. plumchrus and varied with changes in temperature. TS was estimated with the theoretical sound scattering model using the values of g and h based on the temperature, salinity, and depth of the location where the specimens were collected. Regressions of the tilt-averaged TS versus PL were obtained at 38, 120, and 200 kHz. The averaged TS of N. cristatus and N. plumchrus at 120 kHz, which is widely used as a high frequency, ranged from −110.0 to −103.1 dB and from −121.4 to −109.7 dB, respectively. There was a positive correlation between frequency and averaged TS: the higher the frequency, the higher the value of averaged TS. The TS at 120 and 38 kHz varied from 14.8 to 16.4 dB in N. cristatus and from 17.9 to 18.7 dB in N. plumchrus, respectively; that at 200 and 120 kHz varied from 2.9 to 5.5 dB in N. cristatus and from 5.3 to 6.5 dB in N. plumchrus, respectively.     

Changes in nitrogen transformation in forest soil representing the climate gradient of the Japanese archipelago

Net nitrogen transformation was investigated under different climate conditions by soil transplantation and in situ incubation of forest surface soils using the resin-core method. Selected conditions were considered to reflect those of the natural climate gradient in the Japanese archipelago. Study sites were established in natural forests in northern Hokkaido (Uryu), northern Kanto (Kusaki), central Kinki (Kamigamo), and southern Kyushu (Takakuma), representing the northernmost to the southernmost island regions of Japan. Field experiments comparing soils incubated at “native” and “transplanted” sites were conducted from June 2008 to May 2009. Net production, accumulation, and leaching of soil ammonium (NH₄ ⁺) and nitrate (NO₃ ⁻) were measured at each of the sites during the growing season (June–October), the dormant season (November–May), and throughout the year. Net nitrate production was highest in Kusaki soil, especially during the growing season, whereas net ammonium production was highest in Uryu soil, the coldest site, especially during the dormant season. Net nitrate production increased significantly in soils transplanted to a warmer climate during the growing season. However, net ammonium production increased in soils transplanted to colder climates during the dormant season. These findings indicate that, with the exception of the infertile soil samples from Kamigamo, the range of natural climates in Japan has a significant effect on nitrogen availability in surface soil. In addition, the original characteristics of the nitrogen cycle of the surface soil from each native site were retained, even when marked changes in soil temperature (approximately 8°C) occurred after transplantation.     

Whole‐genome resequencing to identify candidate genes for the QTL for oleic acid percentage in Japanese Black cattle

In our previous study, we detected a QTL for the oleic acid percentage (C18:1) on BTA9 in Japanese Black cattle through a genome‐wide association study (GWAS). In this study, we performed whole‐genome resequencing on eight animals with higher and lower C18:1 to identify candidate polymorphisms for the QTL. A total of 39,658 polymorphisms were detected in the candidate region, which were narrowed to 1993 polymorphisms within 23 genes based on allele differences between the high and low C18:1 groups. We subsequently selected three candidate genes, that is, CYB5R4, MED23, and VNN1, among the 23 genes based on their function in fatty acid metabolism. In each candidate gene, three SNPs, that is, CYB5R4 c.*349G > T, MED23 c.3700G > A, and VNN1 c.197C > T, were selected as candidate SNPs to verify their effect on C18:1 in a Japanese Black cattle population (n = 889). The statistical analysis showed that these SNPs were significantly associated with C18:1 (p < 0.05), suggesting that they were candidates for the QTL. In conclusion, we successfully narrowed the candidates for the QTL by detecting possible polymorphisms located within the candidate region. It is expected that the responsible polymorphism can be identified by demonstrating their effect on the gene's function.