Analysis of major photochemical pollutants with meteorological factors for high ozone days in Istanbul, Turkey

Hourly ozone, NO _x and VOC concentrations, measured during 2001–2003 summer periods, are analyzed in order to examine the interaction patterns between the major photochemical pollutants in ?stanbul. 34 high ozone days throughout the summer periods of the three years are determined and examined in the study together with the meteorological parameters like temperature, wind and vertical structure of the atmosphere. The results show that high levels of ozone are observed mostly under anticyclonic conditions with relatively low wind speeds. High ozone days generally experienced maximum concentrations at afternoon hours and minimum concentrations are reached at rush hours due to NO _x – titration by traffic emissions. High negative correlations with NO _x up to -0.84 are observed at the Saraçhane station while higher correlations for VOC species, up to ?0.75, are calculated for Kadiköy station. Some individual episodes experiencing high ozone concentrations up to 310 μg m^?3 in the early morning hours are also studied. It is found that decreasing inversion heights in the early hours of the day led to suppression of pollutants close to surface and thus, an increase in ozone concentrations was observed. Low wind speeds played a major role in the increase of pollution levels in the region. HYSPLIT model is applied to some particular episodes and the results show that the northeasterly transport to the region was dominant, especially in the early-morning maximums.     

Sour Orange (Citrus Aurantium L.) Growth is Strongly Mycorrhizal Dependent in Terms of Phosphorus (P) Nutrition Rather than Zinc (Zn)

The partial sterilization of soil eliminates useful microorganisms, resulting in the reduced growth of mycorrhizae-dependent citrus plants, which are often unresponsive to the application of fertilizer. Research was conducted to test the hypothesis that indigenous mycorrhizae (IM) inoculation is as efficient as selected mycorrhizal inoculation under sterile and non-sterile soil conditions. Rhizophagus clarus and indigenous mycorrhiza spores, isolated from citrus orchards, were used as arbuscular mycorrhizae fungi under greenhouse conditions with sterile and non-sterile Çanakçi series (Typic xerofluvent) soils with low phosphorus (P) fertility. Different P (0 and 100 mg kg^?1) and zinc (Zn) (0, 5 and 10 mg kg^?1) concentrations were used at the start of the experiments. The shoot, root dry weight (RDW), root colonization, and P, Zn, iron (Fe), copper (Cu) and manganese (Mn) concentrations of the shoot were determined; mycorrhizae dependency (MD) was also calculated.

The results indicate that R. clarus and indigenous mycorrhiza in sterile and non-sterile soil conditions considerably increased the growth of citrus plants. Owing to existing beneficial indigenous rhizosphere microorganisms, citrus plant growth without inoculation was better in non-sterile soils than in the sterile soils. In non-sterilized soil, the plant growth parameters of R. clarus-inoculated soils were higher than those of indigenous mycorrhiza-inoculated soils. Mycorrhizae infection increased certain citrus plant growth parameters, such as root infection, biomass and nutrient uptake (P, Zn, Fe, Mn and Cu). In sterile soil, the addition of up to 5 mg kg^?1 soil Zn and the inoculation of R. clarus significantly increased plant growth; inoculation with indigenous mycorrhiza produced more dry weight upon the addition of up to 100 mg kg^?1 phosphorus pentoxide (P₂O₅). Under sterile soil conditions, without considering fertilizer addition, MD was found to be higher than that of non-sterile soils. In general, the contribution of the indigenous soil spores is significant. However, indigenous soil mycorrhizae may need to be managed for better efficiency in increasing plant growth and nutrient uptake. The major finding was that the inoculation of citrus seedlings with mycorrhiza is necessary under both sterilized and non-sterilized soil conditions.     

Morphological and morphometric features of knee joint in wild boar (Sus scrofa)

In the study, it was aimed to reveal the structure of the knee joint anatomically and morphometrically in the wild pig known as the ancestor of the domestic pig. In the study, the left and right knee joints of mature 10 wild boars were used as material. For this purpose, the materials were fixed with 10% formaldehyde solution. Macroanatomical and morphometrical examinations of bones, menisci and ligaments involved in joint formation were performed after fixation. Trochlea and condyles of femur were examined, and various measurements were made. Trochlear labia were found to be the same size, and the condyles did not show a significant difference in size. The shape of lateral condyle of the tibia was trapezoid, and the shape of medial condyle was triangular. Moreover, the lateral intercondylar tubercule was higher according to the medial one. The presence of a shallow groove on the tibial tuberosity was detected. It was found that the width difference between apex and base was more pronounced on the anterior and lateral surface of the patella. Joint surface of the fibula was found to be flat in all materials. The menisci were ‘C’ shape, but the medial meniscus is more convex than the lateral one. It was observed that the outer edges were thick, while the inner edges were thin. Ligaments of the knee joint were well developed. When the findings of the study were compared with the literature, domestication seemed to have no significant effect in terms of the morphologic properties of the knee joint of wild boar.     

Intravenous pharmacokinetics of moxifloxacin following simultaneous administration with flunixin meglumine or diclofenac in sheep

In this study, the pharmacokinetics of moxifloxacin (5 mg/kg) was determined following a single intravenous administration of moxifloxacin alone and co-administration with diclofenac (2.5 mg/kg) or flunixin meglumine (2.2 mg/kg) in sheep. Six healthy Akkaraman sheep (2 ± 0.3 years and 53.5 ± 5 kg of body weight) were used. A longitudinal design with a 15-day washout period was used in three periods. In the first period, moxifloxacin was administered by an intravenous (IV) injection. In the second and third periods, moxifloxacin was co-administered with IV administration of diclofenac and flunixin meglumine, respectively. The plasma concentration of moxifloxacin was assayed by high-performance liquid chromatography. The pharmacokinetic parameters were calculated using a two-compartment open pharmacokinetic model. Following IV administration of moxifloxacin alone, the mean elimination half-life (t_1/2β), total body clearance (Cl_T), volume of distribution at steady state (V_dss) and area under the curve (AUC) of moxifloxacin were 2.27 hr, 0.56 L h⁻¹ kg⁻¹, 1.66 L/kg and 8.91 hr*µg/ml, respectively. While diclofenac and flunixin meglumine significantly increased the t_1/2β and AUC of moxifloxacin, they significantly reduced the Cl_T and V_dss. These results suggest that anti-inflammatory drugs could increase the therapeutic efficacy of moxifloxacin by altering its pharmacokinetics.     

Evaluating and Modeling of the Seedling Growth Ability of Wheat Seeds as Affected by Shallow-Saline Groundwater Conditions

The adverse effects of shallow-saline groundwater may vary among crucial growth stages of crops by decreasing crop growth and productivity. The present study aimed to assess the germination and seedling growth ability of wheat seeds grown in four different (0.38, 2.0, 4.0, and 8.0 dSm^?1) groundwater salinities (GWS) and three (30, 55, and 80?cm) groundwater depths (GWD) condition. To achieve this aim, wheat crops were grown in drainable lysimeters under rain shelter conditions until the maturity stage, and then wheat seeds were harvested from various saline groundwater conditions. Afterward, wheat seeds were germinated to identify the performance of germination and seedling growth attributes. Response surface methodology (RSM) was used to determine the optimal growing wheat seeds condition, which had high early seedling growth performance. The results showed that the seedling growth performance of wheat seeds increased with increasing GWDs, while decreased with increasing GWSs. Based on the RSM findings, we suggest that GWD and GWS should be at least 42?cm and at most 5.46 dSm^?1, respectively, for sustainable higher wheat yield and seed quality. Finally, this study could provide considerable information for selecting strong and healthy wheat seeds grown under shallow saline groundwater conditions.

     

A serologic survey of viral infections in captive ungulates in Turkish zoos

Zoos and zoologic gardens make optimal environments for interspecies transmission of viral infections. There are seven zoos and several small zoologic collections in Turkey. This study aimed to determine the current status of viral infections in captive ungulates living in these environments. Blood samples were taken from 163 captive animals from two zoos. There were 39 Cameroon sheep (Ovis ammon f aries), 11 Barbary sheep (Ammotragus lervia), 57 pygmy goats (Capra hircus), 9 Angora goats (Capra hircus), 21 mountain goats (Capra aegagrus-aegagrus), 7 llamas (Lama glama), 8 Persian goitred gazelle (Gazella subgutturosa subgutturosa), 7 Caspian red deer (Cervus elaphus maral), 2 fallow deer (Dama dama), and 2 camels (Camelus dromedarius). Antibodies against bovine viral diarrhea virus (BVDV), bovine herpesvirus-1 (BHV-1), bovine adenoviruses (BAV-1 and -3), parainfluenzavirus 3 (PI-3), and bluetongue viruses (BTV-4 and -9) were investigated using the virus neutralization test, and malignant catarrhal fever (MCF) antibodies were screened by ELISA. All animals were negative for BVDV and BHV-1 antibodies. Seroprevalence of BAV-1, BAV-3, PI-3, BRSV, BT-4, BT-9, and MCF were detected as follows: 46.6%, 60.1%, 0.6%, 7.3%, 1.8%, 1.2%, and 51.6%, respectively. Seroprevalence of BAVs and MCF were more common than all other viruses (P < 0.0001). Ten sheep (37.0%), 48 goats (84.2), and 1 Ilama (14.2%) were the only species positive for MCF antibodies. Prevalence of BRSV and MCF antibodies were found to be significantly higher in goats than in sheep. BTV antibodies were detected both in Cameroon sheep and mountain goats and suggest that zoo animals are at risk for BTV in endemic regions.     

Physical and chemical characterization of Ceratonia siliqua L. germplasm in Turkey

Carob (Ceratonia siliqua L.) is natively grown in the coastal areas of the Aegean and Mediterranean region in Turkey. The main carob growing areas (Mediterranean and Aegean) were surveyed and a total 70 promising wild and grafted carob genotypes were selected based on physical and chemical pod properties. Preliminary results showed that Turkey has very rich carob genetic resources containing considerable variations for most of the pod traits. In general, wild carob had smaller pods than the grafted ones. Pod mass ranged from 29.16 g to 120.28 g in the wild genotypes and 71.71 g to 147.91 g in the grafted genotypes with an average 107.61 g for the grafted and 63.72 g for the wild genotypes. The average pod dimensions (width, length and thickness) were 18.16 mm, 16.18 cm and 6.42 mm for the wild genotypes and 21.79 mm, 16.91 cm and 8.79 mm for the grafted genotypes. The average soluble solid content ranged from 59.42% in the wild and 64.06% in the grafted genotypes. The average total acidity of the wild and grafted genotypes was similar (0.78%). The pod traits of the wild genotypes differ significantly from those of the grafted genotypes, and the wild genotypes showed higher variations in these traits compared to the grafted genotypes.     

Identification by culture, PCR, and immunohistochemistry of mycoplasmas and their molecular typing in sheep and lamb lungs with pneumonia in Eastern Turkey

This study used cultures, polymerase chain reaction (PCR), and immunoperoxidase to examine samples from 216 lungs from sheep and lambs with macroscopic pneumonia lesions for the presence of Mycoplasma species. DNA was extracted from lung tissue samples and broth cultures with the help of a DNA extraction kit and replicated using genus-specific and species-specific primers for mycoplasma. The lung samples were examined by the immunoperoxidase method using hyperimmune Mycoplasma ovipneumoniae serum. The randomly amplified polymorphic DNA (RAPD) test was used for the molecular typing of M. ovipneumoniae isolates. Mycoplasma was isolated in the cultures of 80 (37.03 %) of a total of 216 lung samples. Genus-specific mycoplasma DNA was identified by PCR in 96 (44.44 %) samples in broth cultures and 36 (16.66 %) directly in the lung tissue. Of these 96 cases in which genus-specific identification was made, 57 (59.37 %) were positive for reaction with species-specific primers for M. ovipneumoniae and 31 (32.29 %) for Mycoplasma arginini. The DNA of neither of the latter two species could be identified in the remaining eight samples (8.33 %) where mycoplasma had been identified. As for the immunoperoxidase method, it identified M. ovipneumoniae in 61 of 216 lung samples (28 %). Positive staining was concentrated in the bronchial epithelium cell cytoplasm and cell surface. RAPD analysis resulted in 15 different profiles. Our results suggest that PCR methods could be successfully used in the diagnosis of mycoplasma infections as an alternative to culture method and identifying this agent at the species level.     

Isolation of DNA from embryo and chorio-allantoic membranes and sexing by PCR in Japanese quail

1. The aim of this study was to evaluate the amount and quality of genomic DNA isolated from embryos and their chorioallantoic membranes (CAM) and to investigate the utility of different PCR methods for identifying the sex of Japanese quail embryos.

2. Fertilised eggs were incubated at 37°C for 120?h and DNA was isolated from samples of embryos and CAM. Target regions of the CHD-W gene or XhoI repeat sequence were amplified by PCR and examined on agarose gels or by using a capillary electrophoresis system.

3. DNA samples from embryos had significantly higher OD260 values than those from CAM, while OD260/280 values were not significantly different between embryos and CAM.

4. Gender identification was not possible by PCR amplification of the CHD gene region or XhoI repeat sequences examined on agarose gels, whereas males and females of Japanese quail were distinguishable when PCR products of the CHD gene were separated by capillary electrophoresis.

5. The results showed that high molecular weight DNA could be isolated from both embryo and CAM of Japanese quail. DNA isolated from CAM could be used for molecular genetic studies where embryos would be used for other purposes, such as in situ hybridisation. A capillary electrophoresis system could be used for identifying the gender of Japanese quail embryos.     

Some physiological changes in strawberry (Fragaria × ananassa ‘Camarosa’) plants under heat stress

Summary

The effects of heat injury induced by long exposures were evaluated in strawberry (Fragaria × ananassa ‘plants’) Camarosa in this study. Seedlings were grown in 14 × 12 cm pots using perlite for three weeks at 25/10°C day/night temperature, and watered daily by modified 1/3 Hoagland nutrient solution. Half of the plants were transferred to a growth chamber with a constant 25°C, 16/8 h (light/dark) photoperiod regime and 1200 lux light intensity for a week to acclimate the plants. Temperature was increased stepwise (5 K per 48 h) to 30, 35, 40°C and finally to 45°C. In addition to others, plants were transferred from the outside to the growth chamber, at each temperature step to impose a heat shock. Leaf relative water content (RWC, %), loss of turgidity, chlorophyll content (Spad value) and heat-stress tolerance (HTS; LT₅₀) were measured in control and stressed plants. Total soluble proteins and total DNA were extracted from the leaves following the above treatments using standard procedures and total protein contents were determined using a Bradford assay. In general, effects of gradual heat stress (GHS) and shock heat stress (SHS) on the variables studied were mostly significant, except for chlorophyll content, while the effect of temperatures was significant for all the variables. Interaction between the heat stress type and temperature treatments was not significant for leaf RWC, loss of turgidity and chlorophyll content. Data also indicated that total protein and DNA contents were changed significantly by heat stress types (GHS and SHS) and/or temperature treatments. The plants exposed to GHS exhibited a significant increase in HST compared with the plants exposed to SHS (LT₅₀ of 41.5°C and 39°C, respectively). Consequently, gradual heat stress increased HST in strawberry leaves. Increased HST may be associated with the accumulation of several heat-stable proteins in GHS plants.