Development of EST‐SSR markers for diversity and breeding studies in opium poppy

All publicly available opium poppy expressed sequence tag (EST) sequences, totalling 20 885, were assembled into unigenes and examined for simple sequence repeats (SSRs). Nearly 19% of the 14 957 unigenes contained SSRs with 4% harbouring more than one SSR. Average density of the SSRs was 1 SSR per 3.6 kb of non‐redundant EST sequence. Trinucleotide SSRs were most frequently identified (39%), and many of the most prevalent motifs were AT‐rich. Flanking primers were designed for 86% of the SSRs and 67 primer pairs were tested on 37 opium poppy accessions and seven related species. All markers were transferable to the related species. Polymorphism information content (PIC) values for the markers were intermediate for comparisons within opium poppy (average of 0.27) and slightly higher for comparisons across species (average of 0.29). The markers were found to be useful for diversity analysis as they successfully distinguished among Turkish opium poppy accessions and land races.     

Determining the Internal Connection Ratios by MRI and Their Effects on Grafted Rooted Vine Growing Features of cvs. Merlot and Syrah

This experiment was carried out to determine the percentage of internal connection between rootstock and scion in graft union with nondestructive and noninvasive MRI (Magnetic Resonance Imaging) method and to follow performance status according to internal connection ratios of the grafted rooted vines after planting to vineyard field. Research was established in a factorial randomized block design and carried out with cvs. Merlot and Syrah grafted onto 110?R rootstock and 4 different internal (MRI) connection levels in 3 replications. The percentages of grafted rooted vine internal determination by MRI by four sides (13.75%) in graft union were found to be very low than others at the pre-planting stage. An increase in the internal connection ratio in the majority of the grafted rooted vines was determined after the vegetative growth phase. Therefore, the internal connection ratios of the graft union of rooted vines of cvs. Merlot and Syrah varieties showed a tendency to increase during the second year of development. Again in both cultivars, loss rate of grafted rooted vines showed a decreasing tendency depending on increase of internal connection ratio of graft union. As a result, in case of decrease of MRI costs, it is thought that grafted rooted vine producers may have the opportunity to supply better quality seedlings to vine growers using MRI techniques.     

Antioxidant and Cytotoxic Activities of Aphanes arvensis Extracts

The objectives of this study were to examine the free radical scavenging activity and the protective effects against macromolecular oxidation as well as the cytotoxic activity of Aphanes arvensis aqueous and methanolic extracts. Free radical scavenging activity was determined by DPPH method. The methanolic extract showed a scavenging activity nearly equivalent to Trolox and Vitamin C and has an IC₅₀ value of 4.54 μg/mL. Total antioxidant capacity was determined by CUPRAC method. The antioxidant capacity of aqueous and methanolic extract was 0.792 and 1.550 mmol TE/g DWE, respectively. The protective effect of A. arvensis extracts against lipid peroxidation was evaluated using a liposome oxidation system. The methanolic extract was more active than the aqueous extract. The aqueous extract possessed protective effect against protein oxidation in a dose dependent manner. Both extracts showed inhibitory effect on DNA oxidation as measured by plasmid relaxation assay. Results presented here indicate that A. arvensis possess strong antioxidant activity and protective effects with very little cytotoxic effect, and they can therefore be used as a natural additive in food, cosmetic and pharmaceutical industries.     

Combined Effects of Cycled Starvation and Feeding Frequency on Growth and Oxygen Consumption of Gilthead Sea Bream,Sparus aurata

Triplicate groups of gilthead sea bream, Sparus aurata (10.4 g), were distributed among 27 tanks (12 fish per tank) and reared in flow‐through seawater. A factorial experiment (3 × 3) was designed to include a continuously fed control group and two cycled starvation groups: 1 + 3 (starved 1 d, fed 3 d), 1 + 5 (starved 1 d, fed 5 d). Each of the feeding groups was subjected to one of three feeding frequencies (2, 4, and 6 times per day) over the 60‐d experiment duration. The average final weight of fish in 1 + 3 and 1 + 5 groups were significantly lower than that of the control group. Partial compensation was observed in the starved groups subjected to any of the three feeding frequencies. Regardless of the feeding frequency, control fish consumed less feed than the starved groups. The highest body protein content was found in the control group. The rate of oxygen consumption significantly increased 30 min after the feeding and the magnitude of the effect increased with the feeding frequency. These results suggest that the present cycling starvation schedules did not invoke a full compensation in gilthead sea bream.     

The chemical and sensorial changes in rainbow trout caviar salted in different ratios during storage

In this study, the intention was to investigate the chemical and sensorial changes occurring during cold storage (4 ± 1°C) of caviar obtained from rainbow trout Oncorhynchus mykiss W. 1792 that was dry salted in different ratios. Caviar has a higher fat and protein content than other seafood products, and in processing it with dry salting technology, it was determined that the shelf life could be up to 28 days for the experimental group in which salt was applied at a rate of 4% and up to 35 days for the experimental group in which salt was applied at a rate of 8%. Thus the storage period of the samples is longer for the products to which a high (8%) amount of salt was applied than the products to which a low (4%) amount of salt was applied in the salting process.     

Compensatory growth response of European sea bass (Dicentrarchus labrax L.) under cycled starvation and restricted feeding rate

The compensatory growth response of the European sea bass (Dicentrarchus labrax) that faced cycling starvation and restricted ration was assessed. Juveniles (10.5 g) were stocked into 15 tanks at a density of 25 fish per tank. Five different feeding regimes were tested on triplicate groups of fish: C_Satiation: control fed for 60 days without deprivation, C_Restricted: 25% restricted feeding, S‐R: 1 day starvation then 4 days C_Restricted feeding, R‐F: 1 day C_Restricted feeding then 4 days C_Satiation feeding, and, finally, S‐F: 1 day starvation then 4 days C_Satiation feeding. The specific growth rate of fish in the C_Satiation (2.5 ± 0.06% day^?1), S‐F (2.5 ± 0.11% day^?1) and R‐F (2.4 ± 0.18% day^?1) were significantly higher than that of C_Restricted (2.2 ± 0.05% day^?1) or S‐R (2.0 ± 0.01% day^?1). Fish in S‐F group were able to achieve catching up with the C_Satiation. There was no significant difference in feed conversion rates but R‐F and S‐F consumed approximately 34% more feed than C_Satiation following the first re‐feeding day. Although, the highest lipid content was observed in C_Satiation (14.4%), S‐R (33.3% dry matter) had the highest water content compared with the C_Satiation and C_Restricted (37.8% and 36.9% dry matter respectively). In conclusion, it may be concluded that sea bass has rapid response to cycling starvation/re‐feeding and that a 25% restricted feeding ratio is insufficient to invoke a compensatory growth response in sea bass.     

Cryopreservation of scaly carp (Cyprinus carpio) sperm: effect of different cryoprotectant concentrations on post-thaw motility, fertilization and hatching success of embryos

The aim of the present study was to determine the effect of various cryoprotectants on post-thaw sperm quality and fertilizing capacity of cryopreserved scaly carp (Cyprinus carpio) semen. The present study focused on freezing of scaly carp sperm utilizing a practical and inexpensive protocol for aquaculture. Semen was diluted with Kurokura’s extender composing 3.6 g/l NaCl, 10 g/l KCl, 0.22 g/l CaCl₂, 0.08 g/l MgCl₂ and 0.2 g/l NaHCO₃. The extender contained three different cryoprotectants (DMSO, DMA and egg yolk) at ratios of 5, 10 and 15 %. Semen was placed into 0.25-ml straws and exposed to liquid nitrogen vapor (?120 °C) using an insulated box with an adjustable tray for 10 min and then plunged into liquid nitrogen (?196 °C) tank. The thawing process was performed in a water bath at 40 °C for 10 s. The results indicated that type of cryoprotectants and their concentrations are rather effective in scaly carp sperm cryopreservation on post-thaw sperm quality, while they are very important in order to obtain high fertilization rates. The highest fertilization rate was determined as 96.4 ± 0.15 % with 15 % egg yolk, while the highest hatching rate was determined as 99.3 ± 0.80 with 15 % DMA. In conclusion, the applied cryopreservation method for scaly carp sperm is suitable to fertilize high amounts of eggs.     

Pathogenicity,Morpho-Species and Mating Types of <Emphasis Type="Italic">Alternaria</Emphasis> spp. causing Alternaria blight in <Emphasis Type="Italic">Pistacia</Emphasis> spp. in Turkey

Alternaria genus includes many plant pathogens on numerous hosts, causing leaf spots, rots and blights. Alternaria blight has been observed as one of the important fungal diseases of pistachio (Pistacia vera L.) as well as its wild relatives (P. terebinthus, P. lentiscus, P. khinjuk, P. atlantica, P. mutica) in Turkey. Alternaria species were sampled from Pistacia spp. hosts from different geographic regions in Turkey during field trips in late spring to early fall of 2013. Alternaria blight symptoms were observed mainly on fruits and rarely on leaves. Four hundred and twenty two of the isolates were morphologically defined as A. alternata, A. tenuissima, A. arborescens and also intermediate morpho-species between A. alternata/A. arborescens. Pathogenicity of the isolates was confirmed with host inoculations on detached fruits. Mating types of 270 isolates of Alternaria spp. from the collection were identified using a PCR-based mating type assay that amplifies either a MAT1-1 or a MAT1-2 fragment from the mating locus. Although a strongly clonal population structure was expected due to the putative asexual reproduction of these fungi, both idiomorphs were detected at equal frequencies at several different spatial scales. The distribution of mating types within each geographic region, within host species as well as in overall collection was not significantly different from 1:1. Amplified fragments of partial idiomorph sequences were obtained for representative isolates. Parsimony trees were depicted based on sequence data of mating type genes for these representative isolates as well as some other Alternaria species obtained by Genebank. Several point mutations presented a few clusters which are supported by high bootsrapped values. The Alternaria blight disease agents both from cultivated and wild hosts were pathogenic on pistachio which may cause difficulties to control the disease because of extensity of pathogen sources. Besides, equal mating type distribution of the pathogen at both geographic and host species levels suggests a potential for sexual reproduction of Alternaria spp. in Turkey.     

Effects of vermicomposts obtained from rose oil processing wastes,dairy manure,municipal open market wastes and straw on plant growth,mineral nutrition,and nutrient uptake of corn

Study aims to investigate the effects of vermicomposts containing oil processing wastes, dairy manure, municipal open market wastes and straw on the growth, nutrient concentrations and nutrient uptakes of corn plant. For this, there different mixtures were prepared. Vermicomposts were applied with the rates of 0, 5000, 10000, and 20000 kg ha^?1 to 2 kg soil containing pots. Study was conducted in growth chamber for 2 months. Vermicompost applications increased plant growth, some plant nutrient concentrations and uptake. Also, vermicomposts showed the variation on parameters depending on their mixtures. Results showed that nutrients taken by the plant increased with the vermicompost until 10000 kg ha^?1 dose. Most of the nutrient concentrations such as phosphorus, potassium, calcium, magnesium, iron, and manganese (P, K, Ca, Mg, Fe, and Mn) were not increased in plant tissues, whereas uptake of them by the plant showed a significant increase. In addition, residual soil nutrients increased with the increase in vermicompost levels.