Factors impacting blackleg development caused by Dickeya spp. in the field

Stem rot symptoms caused by pectinolytic bacteria of Genus Pectobacterium and Genus Dickeya, which are commonly referred to as blackleg, strongly impact the quality of seed potato production in most European countries. Several biotic and abiotic factors, such as cultivar susceptibility, isolate aggressiveness, mother tuber infection density and a wide range of soil-related and climatic factors have been identified in the literature as having an effect on blackleg development. The aim of this study was to identify which biotic and/or abiotic factors are most critical to the development of blackleg in the field. In Switzerland, the predominant species have belonged to Genus Dickeya as far back as 1992, which is why this study only investigates blackleg symptoms induced by Dickeya isolates. Seven field trials, in which inoculated tubers were planted, were conducted during a 3-year period and the number of blackleg-diseased plants was counted. Multiple regression analysis was used in order to determine the factors that had the greatest impact on two different variables: (i) periods between emergence of the plant and disease outbreak and (ii) overall blackleg incidence throughout the growing season. The results of this analysis have revealed that environmental factors, such as evapotranspiration and soil moisture, explain about half of the variability in the number of days before disease outbreak, and the total number of diseased plants is widely dependent upon cultivar susceptibility and isolate aggressiveness.     

Habitat management and patterns of predation of Northern Lapwings on wet grasslands: The influence of linear habitat structures at different spatial scales

In managed landscapes, habitat structure is frequently manipulated through the creation of features such as tracks, hedges, and waterways. If predator and prey activity are concentrated around these features, levels of predation may be elevated in these landscapes. This issue is of particular importance when habitat structures are used to attract species of conservation concern. For example, the installation of linear waterways in wet grasslands is a common form of habitat management to benefit breeding waders and wader nests and foraging chicks tend to be aggregated around wet features. If predator activity is also focused around these features, and if their linearity increases the probability of prey being located, then the conservation benefits of this management technique may be eliminated. We explore predator movement in relation to the structure and complexity of linear wet features within a lowland wet grassland landscape. We examine patterns of nest and chick predation in lapwing (Vanellus vanellus) at the whole-site, between-field and within-field scales. Mammalian predators were responsible for the majority of nest predation. However, we found no evidence that mammalian predators used linear wet features disproportionately within the landscape, or that wet feature distribution influenced the probability of nest or chick predation. At the whole-site scale, nest predation rates were significantly higher in areas with greater predator presence and lowest where the number of breeding neighbours was high. Thus, predation levels were influenced by large-scale patterns of predator presence and lapwing density but not by the use of linear wet features as a habitat management tool. Managing predator impacts is therefore likely to require empirical assessments of local predator distribution and abundance in order to target measures effectively.     

Productivity and nutrient uptake of newly released wheat varieties at different sowing times under poplar plantation in north-western India

Standardisation of cultural practises is one of the primary objectives to make the system ecologically sustainable and economically viable. In this context, the present study was conducted to optimise the time of sowing in relation to newly released wheat varieties under 4–6 year old poplar block plantation. Six widely grown wheat varieties (PBW 502, PBW 343, WH 542, PDW 274, PBW 509 and PBW 373) were intercultivated during three consecutive crop growth seasons at three times of sowing (mid November, late November and mid December) under block plantation of poplar (Populus deltoides Bartr.) clone G-48. The grain yield and nutrient uptake of wheat varieties was higher in open conditions than under the trees. The wheat variety PBW 502 out yielded the rest of wheat varieties over different sowing times. The highest grain yield was recorded when crop was sown during mid November over the 3 years. Thus adoption of PBW 502 under poplar plantation would substantially improve the overall productivity of the system without any additional input cost. All the varieties performed better when sown early compared to one-month delay. The various growth parameters like tiller height and number, spike length and 100 grain weight contributed significantly towards higher grain yield in early sown conditions (mid November) under poplar irrespective of its age of plantation. The nutrient uptake (N, P and K) by wheat straw and grain was higher in early sown crop with longer growth span than the late sown crop. The higher quantity of N, P and K was removed from soil by PBW 509, PBW 373 and PBW 343, respectively.     

Evaluation and application of ORYZA2000 for irrigation scheduling of puddled transplanted rice in north west India

Water-saving technologies that increase water productivity of rice are urgently needed to help farmers to cope with irrigation water scarcity. This study tested the ability of the ORYZA2000 model to simulate the effects of water management on rice growth, yield, water productivity (WP), components of the water balance, and soil water dynamics in north-west India. The model performed well as indicated by good agreement between simulated and measured values of grain yield, biomass, LAI, water balance components and soil water tension, for irrigation thresholds ranging from continuous flooding (CF) to 70 kPa soil water tension.Using weather data for 40 different rice seasons (1970-2009) at Ludhiana in Punjab, India, the model predicted that there is always some yield penalty when moving from CF to alternate wetting and drying (AWD). With an irrigation threshold of 10 kPa, the average yield penalty was 0.8 t ha⁻¹ (9%) compared with CF, with 65% irrigation water saving, which increased to 79% at 70 kPa with a yield penalty of 25%. The irrigation water saving was primarily due to less drainage beyond the root zone with AWD compared to CF, with only a small reduction in evapotranspiration (ET) (mean 60 mm).There were tradeoffs between yield, irrigation amount and various measures of WP. While yield was maximum with CF, water productivity with respect to ET (WP_ET) was maximum (1.7 g kg⁻¹) for irrigation thresholds of 0 (CF) to 20 kPa, and irrigation water productivity (WP_I) increased to a maximum plateau (1.3 g kg⁻¹) at thresholds ≥30 kPa.Because of the possibility of plant stress at critical stages known to be sensitive to water deficit (panicle initiation (PI) and flowering (FL)), treatments with additional irrigations were superimposed for 2 weeks at one or both of these stages within the 10, 20 and 30 kPa AWD treatments. Ponding for two weeks at FL was more effective in reducing the yield penalty with AWD than ponding at PI, but the biggest improvement was with ponding at both stages. This reduced the average yield loss from 9% (0.8 t ha⁻¹) to 5% (0.5 t ha⁻¹) for AWD with thresholds of 10 and 20 kPa. However, maximum WP_I (1.1 g kg⁻¹) was achieved with an irrigation threshold of 20 kPa combined with more frequent irrigation at FL only, but with a greater yield penalty (8%). Thus the optimum irrigation schedule depends on whether the objective is to maximise yield, WP_ET or WP_I, which depends on whether land or water are most limiting. Furthermore, the optimum irrigation schedule to meet the short term needs of individual farmers may differ from that needed for sustainable water resource management.     

Effect of water management on dry seeded and puddled transplanted rice: Part 2: Water balance and water productivity

Labour and water scarcity in north west India are driving researchers and farmers to find alternative management strategies that will increase water productivity and reduce labour requirement while maintaining or increasing land productivity. A field experiment was done in Punjab, India, in 2008 and 2009 to compare water balance components and water productivity of dry seeded rice (DSR) and puddled transplanted rice (PTR). There were four irrigation schedules based on soil water tension (SWT) ranging from saturation (daily irrigation) to alternate wetting drying (AWD) with irrigation thresholds of 20, 40 and 70 kPa at 18–20 cm soil depth. There were large and significant declines in irrigation water input with AWD compared to daily irrigation in both establishment methods. The irrigation water savings were mainly due to reduced deep drainage, seepage and runoff, and to reduced ET in DSR. Within each irrigation treatment, deep drainage was much higher in DSR than in PTR, and more so in the second year (i.e. after 2 years without puddling). The irrigation input to daily irrigated DSR was similar to or higher than to daily irrigated PTR. However, within each AWD treatment, the irrigation input to DSR was less than to PTR, due to reduced seepage and runoff, mainly because all PTR treatments were continuously flooded for 2 weeks after transplanting. There was 30–50% irrigation water saving in DSR-20 kPa compared with PTR-20 kPa due to reduced seepage and runoff, which more than compensated for the increased deep drainage in DSR. Yields of PTR and DSR with daily irrigation and a 20 kPa irrigation threshold were similar each year. Thus irrigation and input water productivities (WP_I and WP_I+R) were highest with the 20 kPa irrigation threshold, and WP_I of DSR-20 kPa was 30–50% higher than of PTR-20 kPa. There was a consistent trend for declining ET with decreasing frequency of irrigation, but there was no effect of establishment method on ET apart from higher ET in DSR than PTR with daily irrigation. Water productivity with respect to ET (WP_ET) was highest with a 20 kPa irrigation threshold, with similar values for DSR and PTR. An irrigation threshold of 20 kPa was the optimum in terms of maximising grain yield, WP_I and WP_I+R for both PTR and DSR. Dry seeded rice with the 20 kPa threshold outperformed PTR-20 kPa in terms of WP_I through maintaining yield while reducing irrigation input by 30–50%.     

A Tal-Ph<Superscript>I</Superscript> wheat genetic stock facilitates efficient alien introgression

The genetic stock Chinese Spring Ph^I (refer as CS-Ph^I hereafter) with the Ph ^I gene (Ph gene inhibitor, introduced from a high-pairing accession of Aegilops speltoides) was crossed as a male parent to a Tai-gu genic male-sterile wheat with the Tal gene and backcrossed once to CS-Ph^I to develop the Tal-Ph^I genetic stock. The Tal-Ph^I stock, CS-Ph^I as well as Chinese Spring (CS), were test-crossed using Aegilops peregrina (syn. Aegilops variabilis) to test the effectiveness of the Ph ^I gene inducing homoeologous chromosome pairing in the Tal-Ph^I stock. At meiotic I(MI) of pollen mother cells (PMCs), the average chromosome pairing of the TC₁ testcrosses of TalCSPh^IC_08–4/Ae. peregrina, TalCSPh^IC_11–5/Ae. peregrina and CS/Ae. peregrina was 26.81 I + 3.64 II + 0.33  + 0.07 III + 0.01 IV, 24.75 I + 4.58 II + 0.25  + 0.21 III + 0.07 IV and 32.25 I + 1.38 II, respectively. These data indicated that the Ph ^I gene could promote homoeologous chromosome pairing in the Tai-gu male sterile background. In order to verify the introgression of the chromatin from Ae. speltoides into CS in the three CS-Ph^I lines, a total of 79 SSR primers located on group-3 chromosomes were used for PCR analysis using the genomic DNA of CS, Ae. speltoides and the three CS-Ph^I lines. Two markers Xwmc505 _-110 and Xwmc674 _-160 amplified S genome-specific fragments from Ae. speltoides in lines Ph^IC_04–13 and Ph^IC_11–5, providing molecular evidence for the introgression of Ae. speltoides-specific chromatin in the two lines. Furthermore, some 3D-specifc SSR markers were missing in line Ph^IC_04–13, indicating there might be a deletion of chromosome 3D in this line. In further experiments, a BC₁ population was produced from the cross of Tal-Ph^I/Triticum durum-Dasypyrum villosum amphiploid (AABBVV)//CS-Ph^I, and the progenies were further screened for chromosome recombination by GISH analysis. A homozygous translocation line T5VS·5VL-5DL was identified from the BC₁F₂ by genomic in situ hybridization, C-banding and SSR analysis. The results of the present study demonstrate the Tal-Ph^I is a useful genetic stock for transferring alien genes into common wheat.     

Effects of long‐term applications of various nitrogen sources on chemical soil properties and composition of bromegrass hay

Effects of 15 annual applications (from 1979 to 1993) of ammonium nitrate (AN), urea, ammonium sulfate (AS), and calcium nitrate (CN) applied at 168 and 336 kg N ha^‐1 to bromegrass (Bromus inermis Leyss.) on soil acidification, and concentration of aluminum (Al), iron (Fe), manganese (Mn), zinc (Zn), and copper (Cu) in soil and in hay were investigated in a field experiment on a thin Black Chemozemic (Typic Boroll) soil in Alberta, Canada. Soil was acidified and the concentration of extractable Al, Fe, and Mn was increased by nitrogen (N) application, but the magnitude varied with N source. Soil acidification was greatest with AS, followed by AN and urea, with no effect of CN. At 336 kg N ha^‐1 rate, soil was acidified to a depth of 10, 15 and 30 cm with urea, AN AS, respectively. Soil acidification was also greater at 336 kg than 168 kg N ha^‐1. The CaCl₂‐extractable Al and Fe in the 0–15 cm layer increased with N application, which closely followed the decrease in soil pH from various N sources. Extractable Al and Fe concentration in the 15–30 cm layer increased in response to reduction in soil pH by AS only, and there was no change in the extractable Al and Fe below the 30‐cm depth by any form of N. The DTPA‐extractable Mn in soil generally changed in response to N application. There was no effect of N source on the DTPA‐extractable Zn and Cu in soil. When soil pH had been lowered from N application, the concentration of Al in hay decreased while Zn concentration increased. The Mn concentration in forage increased markedly in response to reduced soil pH from application of AN, urea and AS. There was no effect of N fertilization on the Cu and Fe concentration in hay. In conclusion, the magnitude of soil acidification, changes in the Al, Fe, and Mn concentrations in soil and changes in the Al, Zn, and Mn concentrations in bromegrass hay varied with N source. The results suggest the need for periodic monitoring of soil pH and consideration of liming costs in the economics of various N fertilizers.     

Comparisons of RFLP and PCR-based markers to detect polymorphism between wheat cultivars

Previously chromosome 3A of wheat (Triticum aestivum L.) was reported to carry genes influencing yield, yield components, plant height, and anthesis date. The objective of current study was to survey various molecular marker systems for their ability to detect polymorphism between wheat cultivars Cheyenne(CNN) and Wichita (WI), particularly for chromosome3A. Seventy-seven `sequence tagged site' (STS), 10simple sequence repeat (SSR), 40 randomly amplified polymorphic DNA (RAPD) markers, and 52 restriction fragment length polymorphism (RFLP) probes for wheat homoeologous group 3 chromosomes, were investigated. Three (3.9%) STS-PCR primer sets amplified polymorphic fragments for the two cultivars, of which one was polymorphic for chromosome 3A. Sixty percent of SSR markers detected polymorphism between CNN and WI of which 50% were polymorphic for chromosome 3A. Twenty percent of RAPD markers detected polymorphism between CNN and WI in general, but none of these detected polymorphism for chromosome 3A. Of the fifty-two RFLP probes, 78.8% detected polymorphism between CNN and WI for group 3 chromosomes with one or more of seven restriction enzymes and 42% of the polymorphic fragements were for chromosome 3A. These high levels of RFLP and SSR polymorphisms between two related wheat cultivars could be used to map and tag genes influencing important agronomic traits. It may also be important to reconsider RFLP as the most suitable marker system at least for anchor maps of closely related wheat cultivars. This revised version was published online in July 2006 with corrections to the Cover Date.