Assessing UAV-collected image overlap influence on computation time and digital surface model accuracy in olive orchards

Addressing the spatial and temporal variability of crops for agricultural management requires intensive and periodical information gathering from the crop fields. Unmanned Aerial Vehicle (UAV) photogrammetry is a quick and affordable method for information collecting; it provides spectral and spatial information when required with the added value of Digital Surface Models (DSMs) that reconstruct the crop structure in 3D using “structure from motion” techniques. In the full process from UAV flights to image analysis, DSM generation is one bottle-neck due to its high processing time. Despite its importance, the optimization of the required forward overlap for saving time in DSM generation has not yet been studied. UAV images were acquired at 50 and 100 m flight altitudes over two olive orchards with the aim of generating DSMs representing the tree crowns. Several DSMs created with different forward laps (in intervals of 5–6% from 58 to 97%) were evaluated in order to determine the optimal generation time according to the accuracy of tree crown measurements computed from each DSM. Based on our results, flying at 100 m altitude and with a 95% forward lap reported the best configuration. From the analysis derived from this configuration, tree volume was estimated with 95% accuracy. In addition, computing time was 85% lower in comparison to the maximum overlap studied (97%). It allowed computing the 3D features of 600 trees in a 3-ha parcel in a highly accurate and quick (a few hours after the UAV flights) manner by using a standard computer.     

Alien and endemic flora at reference and non‐reference sites in Mediterranean‐type streams in Portugal

• 1. A comparison was made between a variety of alien and endemic plant species from 272 aquatic and riparian habitats in Portuguese Mediterranean‐type streams in reference condition — i.e. near‐natural river corridors — and non‐reference condition. The objective was to detect differences in relative proportion and cover between these species groups. The differences in endemic and alien flora from siliceous and calcareous river types were also analysed. Environmental and human disturbance factors were related with the richness and cover of both species groups.
• 2. A total of 568 species were found, of which 44 were alien and 28 were endemic. Alien species were present at 91% of the surveyed locations, and were consistently more widespread at non‐reference sites than at reference ones for both river types, with calcareous sites having a higher invasibility. Endemic species occurred at 45% of the sampling sites and displayed a significantly lower richness and cover than their alien counterparts.
• 3. Alien richness and cover were positively related to direct human disturbance within the river systems, and with floodplain uses such as urban occupation, intensive agriculture, and nutrient inputs. Endemic species also respond to anthropogenic variables, rather than to climatic and geographical ones, with richness and cover increasing as human impacts on fluvial systems and related floodplains decrease.
• 4. Comprehensive control of alien invasive species and the protection of endemic plant populations will require attempts at monitoring ecological river integrity, and the achievement of ‘good ecological status’ — one of the goals of the European Union's Water Framework Directive. Portuguese riparian areas must be managed in such a way as to protect the relatively few preserved riparian habitats by lowering the direct and indirect pressures in fluvial corridors and thus preventing future alien plant invasions.

Copyright © 2006 John Wiley & Sons, Ltd.     

Exploring Micromonospora as Phocoenamicins Producers

Over the past few years, new technological and scientific advances have reinforced the field of natural product discovery. The spirotetronate class of natural products has recently grown with the discovery of phocoenamicins, natural actinomycete derived compounds that possess different antibiotic activities. Exploring the MEDINA’s strain collection, 27 actinomycete strains, including three marine-derived and 24 terrestrial strains, were identified as possible phocoenamicins producers and their taxonomic identification by 16S rDNA sequencing showed that they all belong to the Micromonospora genus. Using an OSMAC approach, all the strains were cultivated in 10 different media each, resulting in 270 fermentations, whose extracts were analyzed by LC-HRMS and subjected to High-throughput screening (HTS) against methicillin-resistant Staphylococcus aureus (MRSA), Mycobacterium tuberculosis H37Ra and Mycobacterium bovis. The combination of LC-UV-HRMS analyses, metabolomics analysis and molecular networking (GNPS) revealed that they produce several related spirotetronates not disclosed before. Variations in the culture media were identified as the most determining factor for phocoenamicin production and the best producer strains and media were established. Herein, we reported the chemically diverse production and metabolic profiling of Micromonospora sp. strains, including the known phocoenamicins and maklamicin, reported for the first time as being related to this family of compounds, as well as the bioactivity of their crude extracts. Although our findings do not confirm previous statements about phocoenamicins production only in unique marine environments, they have identified marine-derived Micromonospora species as the best producers of phocoenamicins in terms of both the abundance in their extracts of some major members of the structural class and the variety of molecular structures produced.     

Heterologous expression of type I antifreeze peptide GS-5 in baker's yeast increases freeze tolerance and provides enhanced gas production in frozen dough

The demand for frozen-dough products has increased notably in the baking industry. Nowadays, no appropriate industrial baker's yeast with optimal gassing capacity in frozen dough is, however, available, and it is unlikely that classical breeding programs could provide significant improvements of this trait. Antifreeze proteins, found in diverse organisms, display the ability to inhibit the growth of ice, allowing them to survive at temperatures below 0 degrees C. In this study a recombinant antifreeze peptide GS-5 was expressed from the polar fish grubby sculpin (Myoxocephalus aenaeus) in laboratory and industrial baker's yeast strains of Saccharomyces cerevisiae. Production of the recombinant protein increased freezing tolerance in both strains tested. Furthermore, expression of the GS-5 encoding gene enhanced notably the gassing rate and total gas production in frozen and frozen sweet doughs. These effects are unlikely to be due to reduced osmotic damage during freezing/thawing, because recombinant cells showed growth behavior similar to that of the parent under hypermosmotic stress conditions.     

Genetic mapping of quantitative resistance to race 5 of Pseudomonas syringae pv. phaseolicola in common bean

Halo-blight is an important worldwide bacterial disease of common bean (Phaseolus vulgaris L.) caused by Pseudomonas syringae pv. phaseolicola. Nine races of the pathogen and five race-specific resistance genes have been previously described. However, a quantitative response to this pathogen has also been described. The objective of this study was to identify halo-blight resistance loci linked to molecular markers that could be used in resistance breeding. Chromosomal regions related to race 5 halo-blight resistance were localized on a genetic map of RAPD and AFLP molecular markers and constructed by the analysis of a “Jules” × “Canela” F₂ progeny. “Jules” shows quantitative resistance to halo-blight and “Canela” is a very appreciated but susceptible Spanish bean landrace. Two QTL for resistance to halo-blight were mapped in two linkage groups. There were four large groups, with 14–22 molecular markers each, five with 4–8 markers each, and three with 2 or 3 markers each.     

Extracts of Maqui ( Aristotelia chilensis ) and Murta ( Ugni molinae Turcz.): sources of antioxidant compounds and α-Glucosidase/α-Amylase inhibitors

The objective of this work was to evaluate the antioxidant and antihemolytic activities of crude, aqueous, and organic-aqueous extracts of maqui ( Aristotelia chilensis ) and murta ( Ugni molinae Turcz.), together with their inhibiting effect on enzymes involved in the metabolism of carbohydrates. Radical scavenging activity, inhibition of linoleic acid oxidation in a micellar system, antihemolytic activity, and inhibition of α-amylases and α-glucosidases were analyzed. Crude extracts of maqui leaves and fruits were found to be important sources of polyphenolic compounds, showing 69.0 ± 0.9 and 45.7 ± 1.1 mg GAE/g dm, respectively. Polyphenols from maqui leaves were active as antioxidants and antihemolytic compounds (p < 0.05), showing a noncompetitive inhibiting effect on α-glucosidase. Flavan-3-ol polymers and glycosylated flavonols, such as quercetin glucoside and kaempferol glucoside, were tentatively identified in extracts. This preliminary observation provides the basis for further examination of the suitability of polyphenol-enriched extracts from maqui and murta as nutritional or medicinal supplements with potential human health benefits.     

Chemical composition and insecticidal activity of essential oils from Vanillosmopsis pohlii baker against Bemisia argentifolii

Essential oils from the heartwood and leaves of specimens of Vanillosmopsis pohlii collected in two different localities were analyzed by GC-MS. The major constituent of both heartwood essential oils was the sesquiterpene alpha-bisabolol. Essential oil composition from leaves was quite different for two specimens and showed beta-pinene and E-caryophyllene as principal constituents. The essential oil of heartwood and the pure sesquiterpene alpha-bisabolol were tested against Bemisia argentifolii, the white fly fruit plague, and pronounced insecticidal effects were observed.     

Bioactive Compounds and Sensory Quality of Black and White Mulberries Grown in Spain

The objective of this study was to evaluate and compare, for the first time, white and black mulberry species in terms of main phytochemical, volatile composition and sensory profile characteristics in eight Spanish clones. The results showed that black and white mulberry species displayed significant different characteristics. PLS analysis has allowed grouping of the clones into four groups (i) MA1, MA2 and MN2, (ii) MN3 and MN4, (iii) MA3 and MA4, and (iv) MN1. Experimental results proved that Spanish mulberries have potential for fresh consumption due to their high antioxidant capacity (10.7–86.1 mg Trolox 100 g^?1), polyphenol (76.7–180 mg gallic acid 100 g^?1) and ellagic acid content (8.7–15.5 mg 100 g^?1) as well as considerable amount of volatile compounds (35) with desirable attributes, which were scored high by a trained panel. Cultivars from the Morus nigra species seem to provide fruits with higher content of bioactive compounds and better aptitude for fresh consumption than Morus alba. Differences among the species should be attributed to genetics because they were cultivated under same conditions.     

Seed oil bodies from Gevuina avellana and Madia sativa

In this study, oil bodies (OBs) from Gevuina avellana (OBs-G) and Madia sativa (OBs-M) were isolated and characterized. Microscopic inspection revealed that the monolayer on OB-G was thinner compared to that on OB-M. Cytometric profiles regarding size, complexity, and staining for the two OB sources were similar. Fatty acid to protein mass ratio in both OBs was near 29, indicating high lipid enrichment. OBs-G and OBs-M showed a strong electrostatic repulsion over wide ranges of pH (5.5-9.5) and NaCl concentration (0-150 mM). Proteins displaying highly conserved sequences (steroleosins and aquaporins) in the plant kingdom were identified. The presence of oleosins was immunologically revealed using antibodies raised against Arabidopsis thaliana oleosins. OBs-G and OBs-M exhibited no significant cytotoxicity against the cells. This is the first report about the isolation and characterization of OBs-G and OBs-M, and this knowledge could be used for novel applications of these raw materials.