Soil quality and fertility in sustainable agriculture,with a contribution to the biological classification of agricultural soils

Soils and crops are particularly vulnerable to climate change and environmental stresses. In many agrosystems, soil biodiversity and ecosystem services provided by soils are under threat from a range of natural and human drivers. Agricultural soils are often subject to agronomic practices that disrupt soil trophic networks and make soils less productive in the long term. In this scenario, sustainable soil use aimed at improving plant/root status, growth and development plays a crucial role for enhancing the biological capacity of agricultural soils. This commentary paper is divided into the following four main sections: (i) the contentious nature of soil organic matter; (ii) soil biological quality/fertility; (iii) soil classification; and, (iv) which agricultural practices can be defined as sustainable? The published literature was analyzed within a holistic framework, with agrosystems considered as living systems where soil, vegetation, fauna and microorganisms co-evolve and are reciprocally influenced. Ultimately, this article will suggest a better stewardship of agricultural soils as a natural capital.     

Effect of cultural practices on the development of arabica coffee berry disease,caused by <Emphasis Type="Italic">Colletotrichum kahawae</Emphasis>

In the high altitude regions of Africa, coffee berry disease (CBD), caused by Colletotrichum kahawae, is the main constraint for arabica coffee (Coffea arabica) production. However, certain agricultural practices can reduce losses caused by the disease and thereby promote optimum production. On small family farms in Cameroon, mixed cropping with fruit trees, intercropping with food crops and maintenance pruning of coffee trees are very widespread agricultural practices that can affect CBD epidemics. Consequently, an epidemiological study was conducted to assess how cultural practices affected the disease in an arabica coffee smallholding in Cameroon. The disease was monitored on a weekly basis over four successive years (2002–2005) on coffee trees in diverse cultural situations. Cultural practices likely to reduce losses due to CBD were identified. The infection rate was significantly lower on coffee trees grown intensively than on coffee trees grown in the traditional manner. Coffee trees located under the shade of fruit trees were significantly less attacked than those located in full sunlight. In addition, berries on the leafless parts of branches, near the main trunk of the coffee tree, were less infected than those on leafy sections. These results show that maintenance pruning, removal of mummified berries, and mixed cropping with shade plants are cultural practices which create environmental conditions that limit CBD development.     

The effects of temperature on the physiological response to low oxygen in Atlantic sturgeon

Atlantic sturgeon (Acipenser oxyrhynchus), which are bottom dwelling and migratory fish, experience environmental hypoxia in their natural environment. Atlantic sturgeon, acclimated to either 5 or 15°C, were subjected to a 1 h severe (<10 mm Hg) hypoxia challenge in order to document their physiological responses. We measured hematological parameters, including O₂ transport (hemoglobin, hematocrit), ionic (chloride, osmolality), and metabolic (glucose, lactate) variables under normoxic conditions (~160 mm Hg), immediately following a 1 h exposure to hypoxic water, and following a further 2 h of recovery from this challenge in normoxic water. In a second experiment, we assessed the opercular beat frequency before, during, and after hypoxic exposure. Hemoglobin concentrations and hematocrit were significantly different between fish held at 5°C vs. 15°C and also significantly different between normoxia prior to hypoxia and following recovery. Plasma lactate concentrations increased following hypoxia at both temperatures, indicative of an increase in anaerobic metabolism. In contrast, a significant increase in plasma glucose concentrations in response to hypoxia only occurred at 5°C, suggesting different fuel demands under different temperatures. Changes in opercular beat frequency (OBF) were dependent on temperature. At 5°C, OBF increased upon exposure to hypoxia, but returned to pre-exposure levels within 35 min for the remainder of the experiment. During hypoxia at 15°C, OBF increased very briefly, but then rapidly (within 20 min) decreased to levels below control values. Following a return to normoxia, OBF quickly increased to control levels. Overall, these findings suggest that Atlantic sturgeons are relatively tolerant to short-term and severe hypoxic stress, and the strategies for hypoxia tolerance may be temperature dependent.     

<Emphasis Type="Italic">Oryza sativa</Emphasis> straw restricts <Emphasis Type="Italic">Phalaris minor</Emphasis> growth: allelochemicals or soil resource manipulation?

Unharvested stubbles or harvested straw of rice (Oryza sativa L.) gets incorporated into soil and interferes with the seedling growth of crop plants. In this paper, we investigated whether rice straw, either through releasing allelochemicals and/or through manipulating soil properties, influences seedling growth of Phalaris minor Retz., a non-native weed largely restricted to wheat (Triticum aestivum L.) fields. One hundred twenty grams of soil was amended with rice straw (0.5, 1, 2, 4, or 6 g/pot) and its effect on fresh shoot biomass of P. minor was examined. Any modification of rice straw phytotoxicity through the use of washed rice straw, activated charcoal, soil sterilization, or nitrogen fertilization was also studied. We carried out chemical and microbial analysis of soils to examine the role of soil properties in influencing P. minor growth. Incorporation of rice straw into soil suppressed the growth of P. minor through modifying soil properties. A dose-dependent increase in total phenolics was observed in soil amended with rice straw. Activated carbon or washing of rice straw, however, could not ameliorate the phytotoxic effects of rice straw. Our results provide initial evidence that rice straw restricts P. minor growth by manipulating soil chemical and microbiological properties. Authors contributions IJ conceived of and supervised the study, and wrote the paper; SK carried out the work.     

Genetic relationships among resynthesized,semi-resynthesized and natural <Emphasis Type="Italic">Brassica napus</Emphasis> L. genotypes

The allopolyploidization event that created cultivated oilseed rape Brassica napus L, followed by intense breeding, reduced its genetic diversity. Resynthesized (RS) B. napus L. obtained by interspecific hybridization between genotypes of B. rapa L. and B. oleracea L. can be a valuable source for broadening genetic diversity in cultivated oilseed rape. In this study, we determined the extent of DNA polymorphism among natural accessions of oilseed rape, resynthesized B. napus, their parental species and double-low quality semi-RS lines carrying the Rfo gene. Using 10 selected primer combinations, 522 polymorphic AFLP markers were scored in the complete set of 100 Brassica sp. To detect relationships between these genotypes, a cluster analysis was performed using the Jaccard’s distance. Resynthesized allopolyploids clustered directly between their diploid parents. Cultivated accessions of oilseed rape created a compact group away from resynthesized allopolyploids as well as semi-RS lines. The natural oilseed rape group, which consists of 49 cultivars and breeding lines of oilseed rape, is characterized by lower genetic diversity than the group of 33 accessions of resynthesized oilseed rape, and the analysis showed that the double-low quality semi-RS lines represent a specific genetic variation of B. napus. The de novo resynthesized B. napus lines and the semi-RS lines of double-low quality generated from them, provide a significant opportunity for enrichment the gene pool of oilseed rape.     

Responses of microbial biomass and respiration of soil to topography,burning, and nitrogen fertilization in a temperate steppe

Temporal dynamics of microbial biomass and respiration of soil and their responses to topography, burning, N fertilization, and their interactions were determined in a temperate steppe in northern China. Soil microbial indices showed strong temporal variability over the growing season. Soil microbial biomass C (MBC) and N (MBN) were 14.8 and 11.5% greater in the lower than upper slope, respectively. However, the percentage of organic C present as MBC and the percentage of total N present as MBN were 16.9 and 26.2% higher in the upper than lower slope, respectively. Neither microbial respiration (MR) nor metabolic quotient (qCO₂) was affected by topography. Both MBC and MBN were increased by burning, on average, by 29.8 and 14.2% over the growing season, and MR and qCO₂ tended to reduce depending on the sampling date, especially in August. Burning stimulated the percentage of organic C present as MBC and the percentage of total N present as MBN in the upper slope, but did not change these two parameters in the lower slope. No effects of N fertilization on soil microbial indices were observed in the first growing season after the treatment. Further research is needed to study the long-term relationships between changes in soil microbial diversity and activity and plant community in response to burning and N fertilization.     

Variation of soil enzyme activity and microbial biomass in poplar plantations of different genotypes and stem spacings

To improve the productivity of poplar plantations, a field experiment of split-plot design with four tree spacings and three poplar clones was established, and four soil enzyme activities and microbial biomass were monitored in the trial.Soil enzyme activities, in most cases,were significantly higher in topsoil(0–10 cm) than in lower horizons(10–20 cm).Soil cellulase, catalase and protease activities during the growing season were higher than during the non-growing season, while invertase activity followed the opposite trend.Soil invertase, cellulase and catalase activities varied by poplar clone but soil protease activity did not.Cellulase and protease activities in the plantation at 5×5 m spacing were significantly higher than in the other spacings.The highest catalase activity was recorded at 6×6 m spacing.At the same planting density, invertase activity was greater in square spacings than in rectangular spacings.Soil microbial biomass was also significantly affected by seedling spacing and poplar clone.The mean soil MBC was significantly lower in topsoil than in the lower horizon, while MBN showed the opposite pattern.Significantly positive correlations were observed among soil cellulase, protease and catalase activities(p0.01), whereas soil invertase activity was negatively and significantly correlated with cellulase, protease and catalase activities(p0.01).Soil microbial biomass and enzyme activities were not correlated except for a significantly negative correlation between soil MBC and catalase activities.Variations in soil enzyme activity and microbial biomass in different poplar plantations suggest that genotype and planting spacing should be considered when modeling soil nutrient dynamics and managing for long-term site productivity.     

Effect of heat stress on oxidative stress, lipid peroxidation and some stress parameters in broilers

1. This study was conducted to determine the effects of heat stress on fearfulness, leucocyte components, oxidative stress and lipid peroxidation in two commercial broiler strains, Cobb (C) and Ross (R). 2. At 36 and 37 d of age birds were exposed to 38 +/- 1 degree C for 3 h. Rectal temperatures, duration of tonic immobility (TI), haematocrit values, proportions of leucocyte components (heterophil, lymphocyte, basophil, eosinophil, monocyte), malondialdehyde (MDA) concentrations and antioxidant enzyme activities (CAT, SOD, GPx) of all the birds were determined, before and after heat treatment. 3. Rectal temperatures increased and haematocrit values decreased in birds exposed to heat stress. Heat stress caused a significant increase in heterophil/lymphocyte and in basophil ratios. 4. Exposing birds to heat stress increased duration of TI, suggesting heat-stressed birds tended to be more fearful. 5. Heat stress resulted in a significant Genotype x Treatment interaction for MDA concentration. CAT, SOD and GPx activities; MDA concentrations in heat-stressed R strain birds were greater than in heat-stressed C strain birds.     

Effects of forest harvesting on runoff and sediment characteristics in the Hyrcanian forests,northern Iran

Loss of canopy cover by forest harvesting generally increases the average surface runoff volume and sediment. Selective cutting (single and group selection method) is the most usual forest harvesting method in the Hyrcanian forests in the north of Iran. The purpose of this study is to find the effect of selective logging technique on the hydrological behavior of runoff and sediment in the Kheyrud forests located in northern Iran over 1 year. Four treatments were implemented: natural forest without harvesting (C), forest with selective harvesting (H) and area without canopy cover (WC) and skid trail (S). Three types of data were measured in each plot including soil chemical and physical properties, runoff and sediment load after each rainfall. The results indicate significant differences (P ≤ 0.05) in runoff generation and sediment production with respect to the treatments cover. The runoff in all treatments showed relatively similar response to rainfall, while the highest runoff and sediment were observed in skid trails, and the area without canopy cover (1.13 and 0.62 mm, and 1.2 and 0.51 g m^?2), averagely. In contrast, the natural forest without harvesting and the forest with selective harvesting treatments exhibited the lowest amounts of runoff (0.2 and 0.44 mm) and sediment (0.1 and 0.17 g m^?2), averagely. Implementation of low logging technique was useful to control the effects of logging on the runoff and sediment yield.     

First record of the entomopathogenic fungus <Emphasis Type="Italic">Entomophaga aulicae</Emphasis> on the Bihar hairy caterpillar <Emphasis Type="Italic">Spilarctia obliqua</Emphasis> in Manipur,India

Entomophaga aulicae (Hoffman in Bail) Batko (Zygomycotina: Entomophthorales) was found to cause epizootics in Spilarctia obliqua (Walker) (Arctiidae: Lepidoptera), a polyphagous pest in Manipur, India. Infected caterpillars climbed to elevated positions on plants where they hung upside down, attached by their abdominal prolegs. Infection levels reached up to 57%. The conidiophores are simple, conidia are ovoid to pyriform in shape, and the nuclei stained readily in aceto-orcein. Secondary, tertiary conidia and resting spores were also observed. No rhizoids and cystidia were found. This is the first report of E. aulicae infecting S. obliqua in Manipur.