Enteric bacterial pathogen detection in southern sea otters (Enhydra lutris nereis) is associated with coastal urbanization and freshwater runoff

Although protected for nearly a century, California’s sea otters have been slow to recover, in part due to exposure to fecally-associated protozoal pathogens like Toxoplasma gondii and Sarcocystis neurona. However, potential impacts from exposure to fecal bacteria have not been systematically explored. Using selective media, we examined feces from live and dead sea otters from California for specific enteric bacterial pathogens (Campylobacter, Salmonella, Clostridium perfringens, C. difficile and Escherichia coli O157:H7), and pathogens endemic to the marine environment (Vibrio cholerae, V. parahaemolyticus and Plesiomonas shigelloides). We evaluated statistical associations between detection of these pathogens in otter feces and demographic or environmental risk factors for otter exposure, and found that dead otters were more likely to test positive for C. perfringens, Campylobacter and V. parahaemolyticus than were live otters. Otters from more urbanized coastlines and areas with high freshwater runoff (near outflows of rivers or streams) were more likely to test positive for one or more of these bacterial pathogens. Other risk factors for bacterial detection in otters included male gender and fecal samples collected during the rainy season when surface runoff is maximal. Similar risk factors were reported in prior studies of pathogen exposure for California otters and their invertebrate prey, suggesting that land-sea transfer and/or facilitation of pathogen survival in degraded coastal marine habitat may be impacting sea otter recovery. Because otters and humans share many of the same foods, our findings may also have implications for human health.     

The efficacy of imiquimod 5% cream (Aldara®) in the treatment of aural plaque in horses: a pilot open‐label clinical trial

Aural plaques affect at least 22% of horses and can be asymptomatic or cause ear sensitivity. Immunohistochemical and electron microscopy studies have shown a strong association between aural plaques and papilloma virus. The purpose of this study was to investigate the efficacy of imiquimod 5% cream, an immune response modifier with potent antiviral activity, in the treatment of equine aural plaques. Twenty‐one horses were enrolled and 16 completed the study. Imiquimod 5% cream was applied three times a week, every other week. When both ears were affected only the worst affected ear was treated. Adverse effects in all horses included marked local inflammation, exudation and thick crust formation at the site of treatment and the adjacent skin. Removal of the crust before treatment was painful and required sedation in most horses. Complete resolution of lesions was noted in all horses immediately post‐treatment and the long‐term resolution rate was 87.5%. Duration of therapy ranged from 1.5 to 8 months (median: 2.9 mean: 3.5). All horses were followed‐up for 12–22 months after treatment was discontinued and only two horses had a recurrence of lesions. Clinical signs related to the aural plaques prior to treatment were reported in 11 of 16 (68.8%) horses and included resistance to touching the ears and bridling. Complete resolution of these signs was reported by the owners in all of the horses followed‐up for at least 12 months. In conclusion, the topical application of imiquimod 5% cream is an efficacious treatment for aural plaques in horses.     

Influence of terrestrial lipid and protein sources and activated carbon‐treated fish oil on levels of persistent organic pollutants and fatty acids in the flesh of Atlantic salmon

Reductions in flesh contaminant concentrations were evaluated in a 36‐week feeding trial examining several dietary techniques. Atlantic salmon were fed one of seven dietary treatments for 24 weeks. These diets included a fishmeal, fish oil control diet, an industry control diet, three diets that examined a 75% replacement level of anchovy oil (AO) with flaxseed oil, canola oil and poultry fat, and two diets formulated to be low in contaminants formulated with canola oil, activated carbon‐treated anchovy oil and canola protein concentrate or soy protein concentrate. Following this initial 24‐week feeding interval, a 12‐week finishing diet was utilized to restore the levels of omega‐3 highly unsaturated fatty acids (n‐3 HUFAs). The salmon had marked reductions in their flesh concentrations of total polychlorinated biphenyls (PCBs), dioxin‐like PCBs and total toxic equivalents by the end of the grow‐out phase, but also exhibited significant depressions in their flesh concentrations of n‐3 HUFAs relative to 100AO‐fed fish. The 12‐week finishing diet period was effective in partially re‐instating omega‐3 levels to those present in the flesh lipids of fish fed 100AO while concurrently maintaining lower flesh contaminant concentrations.     

Effect of bis-glycinate bound zinc or zinc sulfate on zinc metabolism in growing lambs

To assess the efficacy of bis-glycinate bound Zn, 36 crossbred wethers (34 ± 2 kg) were sorted by body weight into three groups and stagger started on a Zn-deficient diet (18 mg Zn/kg dry matter [DM]; 22.5% neutral detergent fiber [NDF]) for 45 d prior to a 15-d metabolism period (10 d adaptation and 5 d collection). On day 46, lambs were randomly assigned to dietary treatments (four lambs treatment⁻¹group⁻¹): no supplemental Zn (CON) or 15 mg supplemental Zn/kg DM (ZINC) as Zn sulfate (ZS) or bis-glycinate (GLY; Plexomin Zn, Phytobiotics). Blood was collected from all lambs on days 1, 44, 56, and 61. Liver, jejunum, and longissimus dorsi samples were collected after euthanasia on day 61. Gene expression was determined via quantitative real-time polymerase chain reaction. Data were analyzed using ProcMixed of SAS (experimental unit = lamb; fixed effects = treatment, group, and breed) and contrast statements assessed the effects of supplemental Zn concentration (ZINC vs. CON) and source (GLY vs. ZS). After 15 d of Zn supplementation, plasma Zn concentrations were greater for ZINC vs. CON and GLY vs. ZS (P ≤ 0.01); tissue Zn concentrations were unaffected (P ≥ 0.27). Liver Cu concentrations were lesser for ZINC vs. CON (P = 0.03). Longissimus dorsi Mn concentrations were greater for ZINC vs. CON (P = 0.05) and tended to be lesser for GLY vs. ZS (P = 0.09). Digestibility of DM, organic matter (OM), and NDF was lesser for ZINC vs. CON (P ≤ 0.05); acid detergent fiber digestibility tended to be greater for GLY vs. ZS (P = 0.06). Nitrogen retention (g/d) tended to be greater for GLY vs. ZS (P = 0.10), and N apparent absorption was lesser for ZINC vs. CON (P = 0.02). Zinc intake, fecal output, retention, and apparent absorption were greater for ZINC vs. CON (P ≤ 0.01). Apparent absorption of Zn was −5.1%, 12.8%, and 15.0% for CON, ZS, and GLY, respectively. Nitrogen and Zn retention and apparent absorption were not correlated for CON (P ≥ 0.14) but were positively correlated for ZINC (retention: P = 0.02, r = 0.52; apparent absorption: P < 0.01, r = 0.73). Intestinal expression of Zn transporter ZIP4 was lesser for ZINC vs. CON (P = 0.02). Liver expression of metallothionein-1 (MT1) tended to be greater for GLY vs. ZS (P = 0.07). Although Zn apparent absorption did not differ between sources (P = 0.71), differences in post-absorptive metabolism may be responsible for greater plasma Zn concentrations and liver MT1 expression for GLY-supplemented lambs, suggesting improved bioavailability of GLY relative to ZS.     

Distribution and environmental limitations of an amphibian pathogen in the Rocky Mountains, USA

Amphibian populations continue to be imperiled by the chytrid fungus (Batrachochytrium dendrobatidis). Understanding where B. dendrobatidis (Bd) occurs and how it may be limited by environmental factors is critical to our ability to effectively conserve the amphibians affected by Bd. We sampled 1247 amphibians (boreal toads and surrogates) at 261 boreal toad (Bufo boreas) breeding sites (97 clusters) along an 11° latitudinal gradient in the Rocky Mountains to determine the distribution of B. dendrobatidis and examine environmental factors, such as temperature and elevation, that might affect its distribution. The fungus was detected at 64% of all clusters and occurred across a range of elevations (1030-3550 m) and latitudes (37.6-48.6°) but we detected it in only 42% of clusters in the south (site elevations higher), compared to 84% of clusters in the north (site elevations lower). Maximum ambient temperature (daily high) explained much of the variation in Bd occurrence in boreal toad populations and thus perhaps limits the occurrence of the pathogen in the Rocky Mountains to areas where climatic conditions facilitate optimal growth of the fungus. This information has implications in global climate change scenarios where warming temperatures may facilitate the spread of disease into previously un- or little-affected areas (i.e., higher elevations). This study provides the first regional-level, field-based effort to examine the relationship of environmental and geographic factors to the distribution of B. dendrobatidis in North America and will assist managers to focus on at-risk populations as determined by the local temperature regimes, latitude and elevation.     

Multiple-scale prediction of forest loss risk across Borneo

Context

The forests of Borneo have among the highest biodiversity and also the highest forest loss rates on the planet.

Objectives

Our objectives were to: (1) compare multiple modelling approaches, (2) evaluate the utility of landscape composition and configuration as predictors, (3) assess the influence of the ratio of forest loss and persistence points in the training sample, (4) identify the multiple-scale drivers of recent forest loss and (5) predict future forest loss risk across Borneo.

Methods

We compared random forest machine learning and logistic regression in a multi-scale approach to model forest loss risk between 2000 and 2010 as a function of topographical variables and landscape structure, and applied the highest performing model to predict the spatial pattern of forest loss risk between 2010 and 2020. We utilized a naïve model as a null comparison and used the total operating characteristic AUC to assess model performance.

Results

Our analysis produced five main results. We found that: (1) random forest consistently outperformed logistic regression and the naïve model; (2) including landscape structure variables substantially improved predictions; (3) a ratio of occurrence to non-occurrence points in the training dataset that does not match the actual ratio in the landscape biases the predictions of both random forest and logistic regression; (4) forest loss risk differed between the three nations that comprise Borneo, with patterns in Kalimantan highly related to distance from the edge of the previous frontier of forest loss, while Malaysian Borneo showed a more diffuse pattern related to the structure of the landscape; (5) we predicted continuing very high rates of forest loss in the 2010–2020 period, and produced maps of the expected risk of forest loss across the full extent of Borneo.

Conclusions

These results confirm that multiple-scale modelling using landscape metrics as predictors in a random forest modelling framework is a powerful approach to landscape change modelling. There is immense immanent risk to Borneo’s forests, with clear spatial patterns of risk related to topography and landscape structure that differ between the three nations that comprise Borneo.

     

Prevalence of positive urine culture in the presence of inactive urine sediment in 1049 urine samples from dogs

BackgroundUrinalysis (UA) is often used to screen for bacterial cystitis, regardless of sediment results, and followed up by quantitative urine culture (UC) for definitive diagnosis.ObjectivesDetermine prevalence of positive UCs in dogs with inactive urine sediments on routine UA.AnimalsA total of 1049 urine samples with inactive urine sediments and UCs collected from dogs presented to a veterinary specialty hospital between January 2018 and February 2020.MethodsRetrospective study of dogs with an inactive urine sediment on routine UA and follow‐up UCs. Signalment, UA findings, proteinuria, and UC results were recorded. Associations among these findings were assessed using multivariate logistic regression carried out using a backward stepwise method.ResultsOverall prevalence of positive UC was 3.4% (95% confidence interval [CI], 2.4‐4.8). Escherichia coli was the most commonly isolated bacteria. Only naturally voided samples were associated with increased prevalence of positive culture when compared to collection by cystocentesis or a non‐specified method. No statistically significant association with culture positivity was found for urine protein‐to‐creatinine ratio, urine specific gravity, urine pH, breed, age, or sex.Conclusions and Clinical ImportanceBased on the low prevalence (3.4%) of positive culture in urine samples from dogs with inactive sediment on routine UA and the relatively high cost of UC and sensitivity, cost‐benefit analysis including clinical suspicion of lower urinary tract disease should inform testing decisions, rather than routinely performing cultures on urine samples without active sediments.     

Effects of salinity and temperature on artificial cultivation and early ontogeny of giant kokopu,Galaxias argenteus (Gmelin 1789)

Attempts at artificial propagation and rearing of juvenile galaxiids (‘whitebait’) have been hindered by low fecundities and survival. To circumvent these issues, we subjected wild and captivity‐acclimated giant kokopu (Galaxias argenteus), a hitherto unexplored galaxiid, to captive breeding protocols and evaluated the effects of salinity and temperature on egg fertilisation, incubation duration and hatching. Eggs sourced over several spawning seasons were subjected to different salinity (0, 9, 15, 20 and 30–35 PSU) and temperature (4, 10, 15 and 17°C) combinations. Average fertilisation rates were highest (95%) when gametes were activated in fresh water (0 PSU) and declined as salinity increased. Average hatch rates were highest (71–68%) when eggs were incubated in fresh water (0 PSU) at 10°C and decreased as salinity and temperature increased. Sequential stages of embryonic development were documented and several year classes of offspring were produced to form a captive breeding colony. We conclude that the giant kokopu has notable reproduction‐related qualities that may be useful for future aquaculture exploitation of this species.     

Evolutionary impact assessment: accounting for evolutionary consequences of fishing in an ecosystem approach to fisheries management

Managing fisheries resources to maintain healthy ecosystems is one of the main goals of the ecosystem approach to fisheries (EAF). While a number of international treaties call for the implementation of EAF, there are still gaps in the underlying methodology. One aspect that has received substantial scientific attention recently is fisheries‐induced evolution (FIE). Increasing evidence indicates that intensive fishing has the potential to exert strong directional selection on life‐history traits, behaviour, physiology, and morphology of exploited fish. Of particular concern is that reversing evolutionary responses to fishing can be much more difficult than reversing demographic or phenotypically plastic responses. Furthermore, like climate change, multiple agents cause FIE, with effects accumulating over time. Consequently, FIE may alter the utility derived from fish stocks, which in turn can modify the monetary value living aquatic resources provide to society. Quantifying and predicting the evolutionary effects of fishing is therefore important for both ecological and economic reasons. An important reason this is not happening is the lack of an appropriate assessment framework. We therefore describe the evolutionary impact assessment (EvoIA) as a structured approach for assessing the evolutionary consequences of fishing and evaluating the predicted evolutionary outcomes of alternative management options. EvoIA can contribute to EAF by clarifying how evolution may alter stock properties and ecological relations, support the precautionary approach to fisheries management by addressing a previously overlooked source of uncertainty and risk, and thus contribute to sustainable fisheries.