The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes

Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which also contains non-lignin-degrading brown rot and ectomycorrhizal species. Comparative analyses of 31 fungal genomes (12 generated for this study) suggest that lignin-degrading peroxidases expanded in the lineage leading to the ancestor of the Agaricomycetes, which is reconstructed as a white rot species, and then contracted in parallel lineages leading to brown rot and mycorrhizal species. Molecular clock analyses suggest that the origin of lignin degradation might have coincided with the sharp decrease in the rate of organic carbon burial around the end of the Carboniferous period.     

Large-pore apertures in a series of metal-organic frameworks

We report a strategy to expand the pore aperture of metal-organic frameworks (MOFs) into a previously unattained size regime (>32 angstroms). Specifically, the systematic expansion of a well-known MOF structure, MOF-74, from its original link of one phenylene ring (I) to two, three, four, five, six, seven, nine, and eleven (II to XI, respectively), afforded an isoreticular series of MOF-74 structures (termed IRMOF-74-I to XI) with pore apertures ranging from 14 to 98 angstroms. All members of this series have noninterpenetrating structures and exhibit robust architectures, as evidenced by their permanent porosity and high thermal stability (up to 300°C). The pore apertures of an oligoethylene glycol-functionalized IRMOF-74-VII and IRMOF-74-IX are large enough for natural proteins to enter the pores.     

Spatial relationship between human population density, land use intensity and biodiversity in the Czech Republic

We test a hypothesis about the spatial coincidence of human population density and species richness, and analyze effects of land conversion and ecosystem use on species richness and landscape diversity in human dominated Central European country, the Czech Republic. We calculated fraction of aboveground net primary productivity appropriated by humans and compared it to the species richness of vertebrate, invertebrate and plant groups and to landscape diversity index in 560 mapping grid squares with grid size approximately 130?km². Spatial correlations and regressions were established between human population density, appropriation of net primary production, land cover and biodiversity. We found positive spatial coincidence between human population density and species richness. Although the amount of net primary production was not related to species richness in general, we found significant negative spatial relationship between ecosystem use intensity and landscape diversity. As the area of the Czech Republic exhibits relatively high land use intensities, spatial patterns of human impacts have important implications for land management and biodiversity conservation in a cultural landscape.     

Strategies of supplementation of female suckling calves and nutrition parameters of beef cows on tropical pasture

The performance of female calves in creep feeding under different strategies of supplementation and milk production, intake, and digestibility of grazing Nellore and crossbred cows (Nellore?×?Holstein) during the dry-rainy transition season were assessed. Forty-four female beef suckling calves, with initial age between 90 and 150?days and average initial body weight of 117.7?±?4.3?kg, and their respective dams (24 Nellore and 20 crossbred) with average initial body weight of 417.5?±?8.3?kg, were used. The experimental treatments consisted of: control group-mineral mixture only; strategy 1-supplementation from 112?days prior to weaning (0.375?kg/animal/day); strategy 2-supplementation from 112?days prior to weaning, in increasing amounts of 0.15, 0.30, 0.45, and 0.60?kg/animal/day through the four experimental periods, respectively; and strategy 3-supplementation from 56?days prior to weaning (0.750?kg/animal/day). Calves from strategy 1 had greater (P??0.05) for nutrient digestibility among genetic types. It can be concluded that strategies of supplementation that present an equitable distribution of supplement provides greater weight gain in suckling female beef calves. Crossbred cows produce more milk and present greater DMI than Nellore cows. There are no differences in the nutrient digestibility between Nellore and Nellore × Holstein crossbred cows.     

Utilization of Gracilaria chilensis (Rhodophyta: Gracilariaceae) as a Biofilter in the Depuration of Effluents from Tank Cultures of Fish, Oysters, and Sea Urchins

An evaluation was made on a seasonal basis of the effect of the marine macroalga culture Gracilaria chilensis on concentrations of some soluble and particulate wastes emitted during tank cultures of a fish Isacia conteptionis , an oyster Crassostrea gigas , and a sea urchin Loxechinus albus species. The animals were each cultured in separate tanks, and effluent from each was directed through separate tanks, which contained dense cultures of the Gracilaria chilensis . Inflow-outflow monitoring was conducted for the presence of nitrate, nitrite, ammonium, and phosphate. Also evaluated were particulate nitrogen and phosphate. The most significant wastes were ammonium from the fish culture and nitrate from the oyster culture. These were completely removed from the water, with minor exceptions, by the alga during all seasons of the year. Lesser amounts of soluble phosphate and nitrite, arising from the fish cultures, were also removed. Of the particulate matter, only nitrogen was in evidence from the fish cultures in the summer. It was concluded that Gracilaria chilensis culture was highly efficient at biofiltration of the soluble nutrients tested but had little effect on particulate emissions. The best growth of Gracilaria chilensis occurred in the ammonium-rich effluent from the fish culture.     

Resistance to Xanthomonas campestris pv. campestris (Pammel) Dowson in cabbage Brassica oleracea L

Journal of Plant Diseases and Protection - Xanthomonas campestris pv. campestris (Xcc) is one of the most important pathogens of Brassica oleracea vegetables. To develop resistant basic breeding...     

Detection of the Maedi Visna Virus in the popliteal lymph nodes of sheep infected by the respiratory route

Veterinary Research Communications -     

Relationships between the damage to radish caused by the root-lesion nematode Pratylenchus penetrans, its density prior to cultivation and the soil nematode community structure evaluated by polymerase chain reaction-denaturing gradient gel electrophoresis

A preliminary survey using 20 conventionally farmed fields in which fumigants have been applied every year showed that the root-lesion nematode Pratylenchus penetrans was distributed both in the upper (0–30 cm) and lower (30–60 cm) soil layers. In six of the 20 fields, P. penetrans was detected in the lower layers exclusively, suggesting that the most appropriate depth to sample soil is 0–60 cm to estimate the relationship between the density of P. penetrans and its damage to radish. There was a highly significant correlation ( r  = 0.923) between the density of P. penetrans in the 0–60 cm depth and the number of spots on a radish. No damage to radish was observed in soils with <2.5 individuals of P. penetrans per 20 g soil before cultivation. However, in cases in which the density of P. penetrans was 3.4–6.2 individuals per 20 g soil, the number of spots on a radish showed more variation (0–131.5 per radish) and there was no significant correlation between them. The nematode community structure of soils with 3.4–8 individuals of P. penetrans per 20 g soil, evaluated by polymerase chain reaction-denaturing gradient gel electrophoresis, was significantly different ( anova , PC2, P  <   0.05) between soils with low (0–42) and high (more than 80) damage levels, suggesting that radish damage might be predicted on the basis of the prevailing soil nematode community structure.     

Climate change and the probability of wind damage in two Swedish forests

We simulated how possible changes in wind and ground-frost climate and state of the forest due to changes in the future climate may affect the probability of exceeding critical wind speeds expected to cause wind damage within one northern and one southern study area in Sweden, respectively. The topography of the study areas was relatively gentle and the forests were dominated by Norway spruce (Picea abies (L.) Karst.) and Scots pine (Pinus sylvestris L.). Using estimated changes in the net primary production (NPP) due to climate change and assuming a relative change in the site productivity equal to a relative change in NPP, we simulated possible future states of the forest under gradual adjustment of the site index in response to climate change using the model The Forest Time Machine. Global climate change scenarios based on two emission scenarios and one general circulation model were downscaled to the regional level. The modified WINDA model was used to calculate the sensitivity of the forest to wind and the probability of wind damage for individual forest stands for the periods 2011–2041 and 2071–2100 and for a control period 1961–1990. This was done while taking into account effects on stability of the forest from expected changes in the occurrence of ground frost. Increasing sensitivity of the forest to wind was indicated for both study areas when adhering to recommended management rules of today. Adding also a changed wind climate further increased the probability of wind damage. Calculated probabilities of wind damage were generally higher in the southern study area than in the northern one and were explained by differences in wind climate and the state of the forests, for example with respect to tree species composition. The indicated increase in sensitivity of the forest to wind under the current management regime, and possibly increasing windiness, motivate further analysis of the effects of different management options on the probability of wind damage and what modifications of Swedish forest management are possibly warranted.