Large-scale sequence analysis of avian influenza isolates

The spread of H5N1 avian influenza viruses (AIVs) from China to Europe has raised global concern about their potential to infect humans and cause a pandemic. In spite of their substantial threat to human health, remarkably little AIV whole-genome information is available. We report here a preliminary analysis of the first large-scale sequencing of AIVs, including 2196 AIV genes and 169 complete genomes. We combine this new information with public AIV data to identify new gene alleles, persistent genotypes, compensatory mutations, and a potential virulence determinant.     

Adaptation of mammalian host-pathogen interactions in a changing arctic environment

Many arctic mammals are adapted to live year-round in extreme environments with low winter temperatures and great seasonal variations in key variables (e.g. sunlight, food, temperature, moisture). The interaction between hosts and pathogens in high northern latitudes is not very well understood with respect to intra-annual cycles (seasons). The annual cycles of interacting pathogen and host biology is regulated in part by highly synchronized temperature and photoperiod changes during seasonal transitions (e.g., freezeup and breakup). With a warming climate, only one of these key biological cues will undergo drastic changes, while the other will remain fixed. This uncoupling can theoretically have drastic consequences on host-pathogen interactions. These poorly understood cues together with a changing climate by itself will challenge host populations that are adapted to pathogens under the historic and current climate regime. We will review adaptations of both host and pathogens to the extreme conditions at high latitudes and explore some potential consequences of rapid changes in the Arctic.     

Nutrient cycling and soil leaching in eighteen pure and mixed stands of beech (Fagus sylvatica) and spruce (Picea abies)

Studies on the combined effects of beech–spruce mixtures are very rare. Hence, forest nutrition (soil, foliage) and nutrient fluxes via throughfall and soil solution were measured in adjacent stands of pure spruce, mixed spruce–beech and pure beech on three nutrient rich sites (Flysch) and three nutrient poor sites (Molasse) over a 2-year period. At low deposition rates (highest throughfall fluxes: 17 kg N ha⁻¹ year⁻¹ and 5 kg S ha⁻¹ year⁻¹) there was hardly any linkage between nutrient inputs and outputs. Element outputs were rather driven by internal N (mineralization, nitrification) and S (net mineralization of organic S compounds, desorption of historically deposited S) sources. Nitrate and sulfate seepage losses of spruce–beech mixtures were higher than expected from the corresponding single-species stands due to an unfavorable combination of spruce-similar soil solution concentrations coupled with beech-similar water fluxes on Flysch, while most processes on Molasse showed linear responses. Our data show that nutrient leaching through the soil is not simply a “wash through” but is mediated by a complex set of reactions within the plant–soil system.     

Effects of poultry manure amendment on phosphorus uptake by ryegrass,soil phosphorus fractions and phosphatase activity

Poultry manure (PM) contains a large proportion of phosphorus (P) in mineral-associated forms that may not be readily available for plant uptake. In addition, PM application influences both chemical and biotic processes, and can affect the lability of native soil P. To investigate the effects of PM on soil P availability, we grew ryegrass (Lolium perenne) in greenhouse pots amended with poultry manure. Biomass was harvested at 4, 8, and 16 weeks following PM application, with soil separated into rhizosphere and bulk fractions. Soil was sequentially extracted by H₂O, 0.5 M NaHCO₃, 0.1 M NaOH, and 1 M HCl, and inorganic P (P_i) and enzymatically hydrolyzable organic P (P_oe) were quantitated. Root P concentrations were 37% higher and total P uptake 59% higher with PM application than Control. At week 16, there was 30% more labile-P_i (H₂O- plus NaHCO₃-P_i) in the rhizosphere with PM than in Control. Phosphodiesterase activity increased with PM application. Furthermore, acid phosphomonoesterase, alkaline phosphomonoesterase, and phosphodiesterase activities were all higher in the rhizosphere than in bulk soil at week 16 with PM, indicating that increased labile-P_i was due primarily to stimulation of soil phosphatases to mineralize NaOH-P_oe. Soil pH increased with PM application and plant growth, and may have promoted P availability by decreasing sorption of Al- and Fe-associated inorganic and organic phosphates. These results demonstrate that whereas PM application may initially increase NaOH and HCl-P_i, these fractions can be readily changed into labile-P and do not necessarily accumulate as stable or recalcitrant P in soil.     

Use of multipurpose trees in hill farming systems in Western Nepal

A large number of multipurpose trees and shrubs are deliberately retained or incorporated on farms in the subsistence farming systems on the steep slopes in parts of Nepal. Woody perennials are maintained in contour strips across the slopes and around the fields. The contribution of these trees is the production of foder and firewood and their protective function in reducing the erosion hazards and thereby making crop production possible in those steep slopes where profitable cropping would otherwise be extremely difficult. Based on a case study in two villages of the Western Development Region, this paper presents some data on basic farm management aspects, production of crops and other components, etc. of the system. The performance of the system is assessed and its merits and weakness highlighted.Although the hill farming system extends over quite a large area and accounts for a large number of Nepal's population, it has not received any research attention nor benefitted by any scientific innovations. Improvement possibilities in terms of component technologies as well as farming systems including the incorporation of the several locally available medicinal plants are indicated.     

Gattungsgrenzen bei höheren Discomyceten

Zusammenfassung An Hand besonderer Discomyceten-Funde aus dem Jahre 1961 werden einige Nachbargattungen miteinander verglichen und ihre gegenseitigen Grenzen kritisch erörtert. Danach erweist sich die Sonderstellung vonPtychoverpa Boud. nur mikroskopisch als ausreichend begründet.Helvella Quéletii Bres. kann vonAcetabula sulcata (Pers. ex Fr.) Fuck. nicht gattungsmäßig getrennt werden, sondern ist alsAcetabula Quéletii (Bres.) Bx. nov. comb. zu bezeichnen, wenn beide Gattungen nebeneinander bestehen bleiben.Paramitra ochreoides Bx. nov. gen. et nov. spec. wird erstmalig beschrieben und stellt vermutlich einen Übergang von derOtidea-Gruppe (Wynnella Boud.) zu den Aleurieen dar.

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Summary Starting from rare findings ofDiscomycetes in 1961 some closely related genera are compared and their limits discussed critically. The special position ofPtychoverpa Boud. is sufficiently proved only by microscopic characters. To discernHelvella Quéletii Bres. fromAcetabula sulcata (Pers. ex Fr.) Fuck. generically is not possible, it must be designated asAcetabula Quéletii (Bres.) Bx. nov. comb. if both genera shall be maintained. The new describedParamitra ochreoides Bx. nov. gen. et nov. spec. presumably is a transitional fungus between theOtidea-group (Wynnella Boud.) and theAleurieae.

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, 1961 . . Ptychoverpa Boud. .Helvella Quéletii Bres. Acetabula sulcata (Pers. ex Fr.) Fuck. Acetabula Quéletii (Bres.) Bx. nov. comb., .Paramitra ochreoides Bx. nov. gen. et nov. spec. ; Otidea (Wynnella Boud.) Aleurieae.

     

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