Predicting the evolution of human influenza A

Eighteen codons in the HA1 domain of the hemagglutinin genes of human influenza A subtype H3 appear to be under positive selection to change the amino acid they encode. Retrospective tests show that viral lineages undergoing the greatest number of mutations in the positively selected codons were the progenitors of future H3 lineages in 9 of 11 recent influenza seasons. Codons under positive selection were associated with antibody combining site A or B or the sialic acid receptor binding site. However, not all codons in these sites had predictive value. Monitoring new H3 isolates for additional changes in positively selected codons might help identify the most fit extant viral strains that arise during antigenic drift.     

Bright Spots, Structure, and Magmatism in Southern Tibet from INDEPTH Seismic Reflection Profiling

INDEPTH seismic reflection profiling shows that the decollement beneath which Indian lithosphere underthrusts the Himalaya extends at least 225 kilometers north of the Himalayan deformation front to a depth of approximately 50 kilometers. Prominent reflections appear at depths of 15 to 18 kilometers near where the decollement reflector apparently terminates. These reflections extend north of the Zangbo suture to the Damxung graben of the Tibet Plateau. Some of these reflections have locally anomalous amplitudes (bright spots) and coincident negative polarities implying that they are produced by fluids in the crust. The presence of geothermal activity and high heat flow in the regions of these reflections and the tectonic setting suggest that the bright spots mark granitic magmas derived by partial melting of the tectonically thickened crust.     

Soil Test,Aerial Image and Yield Data as Inputs for Site-specific Fertility and Hybrid Management Under Maize

Several potential sources of information exist to support precision management of crop inputs. This study evaluated soil test data, bare-soil remote sensing imagery and yield monitor information for their potential contributions to precision management of maize (Zea mays L.). Data were collected from five farmer-managed fields in Central New York in 1999, 2000, and 2001. Geostatistical techniques were used to analyze the spatial structure of soil fertility (pH, P, K, NO₃ and organic matter content) and yield variables (yield, hybrid response and N fertilization response), while remote sensing imagery was processed using principal component analysis. Geographic information system (GIS) spatial data processing and correlation analyses were used to evaluate relationships in the data. Organic matter content, pH, P, and K were highly consistent over time and showed high to moderate levels of spatial autocorrelation, suggesting that grid soil sampling at 2.5–5.5ha scale may be used as a basis for defining fertility management zones. Soil nitrate levels were strongly influenced by seasonal weather conditions and showed low potential for site-specific N management. Aerial image data were correlated to soil organic matter content and in some cases to yield, mainly through the effect of drainage patterns. Aerial image data were not well correlated with soil fertility indicators, and therefore were not useful for defining fertility management zones. Yield response to hybrid selection and nitrogen fertilization rates were highly variable among years, and showed little justification for site-specific management. In conclusion, we recommend grid-based management of lime, P, and K, but no justification existed within our limited study area for site-specific N or hybrid management.     

A molecular Einstein ring: imaging a starburst disk surrounding a quasi-stellar object

Images of the molecular CO 2-1 line emission and the radio continuum emission from the redshift 4.12 gravitationally lensed quasi-stellar object (QSO) PSS J2322+1944 reveal an Einstein ring with a diameter of 1.5". These observations are modeled as a star-forming disk surrounding the QSO nucleus with a radius of 2 kiloparsecs. The implied massive star formation rate is 900 solar masses per year. At this rate, a substantial fraction of the stars in a large elliptical galaxy could form on a dynamical time scale of 108 years. The observation of active star formation in the host galaxy of a high-redshift QSO supports the hypothesis of coeval formation of supermassive black holes and stars in spheroidal galaxies.     

Comparison of Point Intercept and Image Analysis for Monitoring Rangeland Transects

There is global recognition that sustainable land use requires monitoring that will detect change on a scale that protects the resource. That fundamental necessity is threatened where labor-intensive methods and high labor costs cause sampling deficiencies and increased Type-II error rates (false negatives). Ground-based imaging is a monitoring method that reduces monitoring labor costs. Nadir (vertical) images acquired with common digital cameras can be manually analyzed for cover using free software. We used an innovative field protocol to acquire standardized, freehand, nadir images (samples) of rangeland, then compared point intercept (PI) and image-analysis techniques. Between methods, precision (repeatability) across users was equivalent; cover measurements were often different, and the image-analysis technique took only a third as long to complete. Image analysis has several advantages over PI besides the reduced labor cost: Images are permanent resource records available for reanalysis if data are questioned, if software improves, or if management objectives change; and image analysis is less biased by moving vegetation, moving pointing devices, and bright vegetation color.