Autoclaving kills soil microbes yet soil enzymes remain active

Biocidal treatment of soil is used to remove or inhibit soil microbial activity, and thus provides insight into the relationship between soil biology and soil processes. Chemical (soil pH, phosphodiesterase, protease) and biological (substrate induced respiration) characteristics of three contrasting soils from tropical savanna ecosystems in north Queensland, Australia were measured in field fresh samples and following autoclaving (121 °C/103 kPa for 30 min on two consecutive days). Autoclaving treatment killed the active soil microbial biomass and significantly decreased protease activity (90%) in all three soils. Phosphodiesterase activity in kaolinitic soils also significantly decreased by 78% and 92%. However, autoclave treatment of smectitic soil only decreased phosphodiesterase activity by 4% only. This study demonstrates phosphodiesterase can remain stable in extreme conditions. This might be a characteristic vital to the cycling of phosphorus in shrink–swell clays in Australian tropical savanna ecosystems.     

Homology modelling of Drosophila cytochrome P450 enzymes associated with insecticide resistance

BACKGROUND: Overexpression of the cytochrome P450 gene Cyp6g1 confers resistance against DDT and a broad range of other insecticides in Drosophila melanogaster Meig. In the absence of crystal structures of CYP6G1 or complexes with its substrates, structural studies rely on homology modelling and ligand docking to understand P450–substrate interactions. RESULTS: Homology models are presented for CYP6G1, a P450 associated with resistance to DDT and neonicotinoids, and two other enzymes associated with insecticide resistance in D. melanogaster, CYP12D1 and CYP6A2. The models are based on a template of the X‐ray structure of the phylogenetically related human CYP3A4, which is known for its broad substrate specificity. The model of CYP6G1 has a much smaller active site cavity than the template. The cavity is also ‘V’‐shaped and is lined with hydrophobic residues, showing high shape and chemical complementarity with the molecular characteristics of DDT. Comparison of the DDT–CYP6G1 complex and a non‐resistant CYP6A2 homology model implies that tight‐fit recognition of this insecticide is important in CYP6G1. The active site can accommodate differently shaped substrates ranging from imidacloprid to malathion but not the pyrethroids permethrin and cyfluthrin. CONCLUSION: The CYP6G1, CYP12D1 and CYP6A2 homology models can provide a structural insight into insecticide resistance in flies overexpressing P450 enzymes with broad substrate specificities. Copyright © 2010 Society of Chemical Industry     

Acute and Chronic Effects of a Contraceptive Compound RTI‐4587‐073(l) on Testicular Histology and Endocrine Function in Miniature Horse Stallions

The objective of this study was to evaluate acute endocrine effects as well as histological changes in testicular parenchyma induced by the contraceptive compound RTI‐4587‐073(l). Six miniature stallions were used in this experiment. The treatment group (n = 3) received one oral dose of 12.5 mg/kg of RTI‐4587‐073(l), and the control group (n = 3) received placebo only. The stallions' baseline parameters (semen, testicular dimensions, endocrine values) were collected and recorded for 5 weeks before treatment and for 6 weeks after treatment. Multiple blood samples were collected for endocrine analysis. Testicular biopsies were obtained before treatment, 1 day after treatment and every other week after treatment. Ultrasound exams were performed to monitor the dimensions of the stallions' testes. All stallions were castrated 6 weeks after treatment. Sperm numbers, motility and percentage of morphologically normal sperm decreased (p < 0.05), while the number of immature germ cells increased in ejaculates from treated animals (p < 0.05). Serum concentrations of inhibin and follicle‐stimulating hormone did not change. Testosterone concentrations initially transiently decreased (p < 0.05) after administration of RTI‐4587‐073(l), and increased several days later (p < 0.05). Testicular content of testosterone and estradiol 17‐β was lower in treated stallions than in control stallions on Day 1 after treatment (p < 0.05). Severe disorganization of the seminiferous tubules, significant loss of immature germ cells and complete depletion of elongated spermatids were observed in testicular biopsies obtained from treated stallions 1 day, 2 and 4 weeks after treatment. These changes were still present in the testicular samples taken from treated stallions after castration. The results of this study confirmed that RTI‐4587‐073(l) has antispermatogenic effects in stallions. Furthermore, we concluded that this compound causes acute sloughing of immature germ cells from the seminiferous tubules. RTI‐4587‐073(l) has significant but transient effects on Leydig cell function in stallions.     

Lacunarity as a tool for assessing landscape configuration over time and informing long-term monitoring: an example using seagrass

Context

Seagrasses are submerged marine plants that have been declining globally at increasing rates. Natural resource managers rely on monitoring programs to detect and understand changes in these ecosystems. Technological advancements are allowing for the development of patch-level seagrass maps, which can be used to explore seagrass meadow spatial patterns.

Objectives

Our research questions involved comparing lacunarity, a measure of landscape configuration, for seagrass to assess cross-site differences in areal coverage and spatial patterns through time. We also discussed how lacunarity could help natural resource managers with monitoring program development and restoration decisions and evaluation.

Methods

We assessed lacunarity of seagrass meadows for various box sizes (0.0001 ha to 400.4 ha) around Cat Island and Ship Island, Mississippi (USA). For Cat Island, we used seagrass data from 2011 to 2014. For Ship Island, we used seagrass data for seven dates between 1963 and 2014.

Results

Cat Island, which had more continuous seagrass meadows, had lower lacunarity (i.e., denser coverage) compared to Ship Island, which had patchier seagrass beds. For Ship Island, we found a signal of disturbance and path toward recovery from Hurricane Camille in 1969. Finally, we highlighted how lacunarity curves could be used as one of multiple considerations for designing monitoring programs, which are commonly used for seagrass monitoring.

Conclusions

Lacunarity can help quantify spatial pattern dynamics, but more importantly, it can assist with natural resource management by defining fragmentation and potential scales for monitoring. This approach could be applied to other environments, especially other coastal ecosystems.

     

DBCP residue studies in soil and well water from two south carolina peach orchards

Soil samples collected from a peach orchard near a well containing 1 pg kg^?1 1,2-dibromo-3chloropropane (DBCP) (contaminated) and from a peach orchard with a well containing 0.1 pg kg^?1 DBCP (uncontaminated) contained less than 0.1 gg kg^?1 and 0.5 μg kg^?1 DBCP residue, respectively. Soil profiles did not explain the presence of DBCP in the contaminated well. However, a possible spill of DBCP approximately 30 m from the contaminated well may have contaminated the well water. Soil samples taken at the site of the possible spill contained high concentrations of DBCP in the upper meter and at 6.1 m where the water table was encountered. The data indicate that the water contamination resulted from this spill of DBCP and not from normal agricultural use.     

Induction of the soybean phytoalexins coumestrol and glyceollin by Aspergillus

Several isoflavonoid phytoalexins produced by soybeans are known to be estrogenic, with potential beneficial health effects in humans. Increased production of phytoalexins by the soybean plant will facilitate research efforts in this area. In this study, phytoalexin induction and accumulation in soybean cotyledon tissue was observed using four species of Aspergillus: A. sojae, A. oryzae, A. niger, and A. flavus. All four Aspergillus species tested elicited phytoalexin accumulation in living soybean cotyledons. Results from a time course study indicated that maximum concentrations of the phytoalexin glyceollin, 955 microg/g fresh weight (fw), occurred at day 3 in soybean cotyledon tissue inoculated with A. sojae. Other Aspergillus species caused an accumulation of glyceollin at significantly lower levels. A maximum concentration of coumestrol of 27.2 microg/g fw was obtained from soybean cotyledons inoculated with A. niger. Soybean phytoalexins induced by food-grade A. sojae and A. oryzae allowed the collection of higher concentrations of phytoalexins for further examination in several in vitro and in vivo biological studies conducted to determine potential estrogenic activities.     

Humic substances in soil and crop sciences: P. MacCarthy, C.E. Clapp, R.L. Malcolm and P.R. Bloom (Editors), American Society of Agronomy and Soil Science Society of America, Madison, WI, 1990, 281 pp., price US$ 30.00, ISBN: 0-89118-104-0

Studies were conducted to determine changes in organic matter and microbial biomass carbon in comparison with structural stability at the surface soil (0–5 cm) of a Charlottetown fine sandy loam, an Orthic Podzol, at three tillage and grassland sites situated in Prince Edward Island. The tillage experiments, established for 3–5 years, included comparisons of mouldboard ploughing, direct drilling, shallow tillage, and chisel ploughing. Two indices of soil structural stability were used: mean weight diameter (MWD) and aggregation index (AI). The latter index assigns a weight factor to aggregate size ranges based on their value for plant germination and root growth.Direct drilling and reduced tillage increased the level of soil organic carbon by 10–17%, relative to mouldboard ploughing. Organic carbon was more enriched in 1–2 mm and 4.75–9.00 mm macroaggregates, especially the former, compared with whole soil. The MWD of aggregates after wet sieving was 33% and 55%, relative to the grassland sites, for mouldboard ploughing and direct drilling, respectively. On these soils of similar mineralogy and particle size, a close linear relationship (r=0.942) was observed between organic carbon (r=0.947) and nitrogen (r=0.923). The AI was significantly correlated to both organic carbon and microbial biomass carbon using power regression. In contrast to MWD, the AI under direct drilling and reduced tillage, associated with an organic carbon level of 2.5%, approximated the AI under grass. Overall, the study showed that minimum tillage systems in humid climates can improve structural stability at the soil surface of fine sandy loams over a relatively short time frame.     

Analysis of mixtures of drugs/chemicals along a fixed-ratio ray without single-chemical data to support an additivity model

This article presents and illustrates an approach to designing and analyzing studies involving mixtures/combinations of drugs or chemicals along fixed-ratio rays of the drugs or chemicals for generalized linear models. When interest can be restricted to a specific ray, we consider fixed-ratio ray designs to reduce the amount of experimental effort. When a ray design is used, we have shown that the hypothesis of additivity can be rejected when higher order polynomial terms are required in the total dose-response model. Thus, it is important that we have precise parameter estimates for these higher order polynomial terms in the linear predictor. We have developed methodology for finding a D _s -optimal design based on this subset of the terms in the linear predictor.