Nucleotide sequence of SRV-1, a type D simian acquired immune deficiency syndrome retrovirus

Simian acquired immune deficiency syndrome (SAIDS) in the macaque genus of monkeys at the California Primate Research Center is apparently caused by infection by a type D retrovirus. The complete nucleotide sequence (8173 base pairs) of a molecular clone of the prototype SAIDS virus isolate, SRV-1, reveals a typical retrovirus structure with long terminal repeats (346 base pairs) and open reading frames for the gag (663 codons), pol (867 codons), and env (605 codons) genes. SRV-1 also has a separate open reading frame of 314 codons between the gag and pol genes that defines the viral protease gene (prt) and a short open reading frame of unknown significance downstream from the env gene. The SRV-1 protease region shows a high degree of homology to its counterpart in the hamster intracisternal A-type particle genome; both these protease genes are about twice as long as the analogous region of other retroviruses. SRV-1 has no notable similarity in either genetic organization or sequence to the human AIDS retroviruses.     

Pinosylvin methyl ether deters snowshoe hare feeding on green alder

Pinosylvin methyl ether (PME), a toxic phenol, is a potent deterrent to showshoe hare feeding on green alder. Concentrations of PME found in green alder parts can account for the low palatability of winter-dormant foliar buds and staminate catkins but cannot affect internode palatability. The lack of a PME-related defense system in internodes suggests that green alder has at least a two-level defense system: defense of growth stages and defense of parts within growth stages.     

The turnover of organic carbon in subsoils. Part 1. Natural and bomb radiocarbon in soil profiles from the Rothamsted long-term field experiments

The Rothamsted long‐term field experiments, started more than 150 years ago, provide unique material for the study of carbon turnover in subsoils. Total organic C, ¹⁴C and ¹³C were measured on soil profiles taken from these experiments, before and after the thermonuclear bomb tests of the mid‐20th century. Four contrasting systems of land management were sampled: land cultivated every year for winter wheat; regenerating woodland on acid soil; regenerating woodland on calcareous soil; and old grassland. The mean radiocarbon ages of all the pre‐bomb samples from cultivated land were 1210 years (0–23 cm), 2040 years (23–46 cm), 3610 years (46–69 cm) and 5520 years (69–92 cm). Bomb radiocarbon derived from thermonuclear tests was present throughout the profile in all the post‐bomb samples, although below 23 cm the amounts were small and the pre‐ and post‐bomb radiocarbon measurements were often not significantly different. Values of δ¹³C increased down the profile, from ?26.3‰ (0–23 cm layer, mean of all measurements) to ?25.2‰ for the 69–92 cm layer. The C/N ratios decreased with depth in virtually all of the profiles sampled. Excluding the surface (0–23 cm) soils from the old grassland, the hyperbola m = 152.1 ? 2341/(1 + 0.264n) gave a close fit to the radiocarbon data from all depths, all sampling times and all sites, where n is the organic C content of the soil, in t ha^?1, and m is the radiocarbon content of the soil, in Δ¹⁴C units, corrected for expansion or contraction of soil layers with time. The aberrant grassland soils almost certainly contained coal: one of them was shown by ¹³C‐NMR to contain 0.82% coal C. In Part 2 (this issue) of this pair of papers, these radiocarbon and total C measurements are used to develop and test a new model for the turnover of organic C in subsoils.     

Improved liquid chromatography methods for the separation and quantification of biotin in NIST standard reference material 3280: multivitamin/multielement tablets

Two independently developed liquid chromatography (LC) methods for the quantitative determination of biotin in multivitamin/multielement tablets (NIST Standard Reference Material 3280 (SRM 3280)) are described. The methods use distinctly different tablet extraction solvents (methanol vs 1.5% aqueous formic acid) and analyte detection principles (mass spectrometry (MS) versus evaporative light-scattering detection (ELSD)) to ensure quantitative reliability. The use of different extraction and detection procedures allows cross-validation of the methods and enhances confidence in the final quantitative results. Both methods yield highly comparable results for the mean level of biotin (LC/MS = 26.5 mg/kg +/- 0.3 mg/kg (n = 12); LC/ELSD = 24.7 mg/kg +/- 1.7 mg/kg (n = 12)) in SRM 3280, yet the methods differ considerably in their analytical characteristics. The isotope-dilution LC/MS method exhibits excellent linearity from 0.02 ng to 77 ng biotin on-column with a method limit of detection (LOD) and limit of quantification (LOQ) of 0.02 ng (S/N > 3) and 0.06 ng (S/N > 10) biotin on-column, respectively. The LC/ELSD method exhibits good linearity from 155 ng to 9900 ng biotin on-column with a method LOD and LOQ of 155 ng (S/N > 3) and 310 ng (S/N > 10) biotin on-column, respectively. Method performance data indicates that the LC/MS method is analytically superior to the LC/ELSD method; however, either method in combination with SRM 3280 should provide quality assurance, accuracy, and traceability for biotin levels in multivitamin/multielement dietary supplements.     

A Non‐Reciprocal Autosomal Translocation 64,XX,t(4;10)(q21;p15) in an Arabian Mare with Repeated Early Embryonic Loss

Balanced autosomal translocations are a known cause for repeated early embryonic loss (REEL) in horses. In most cases, carriers of such translocations are phenotypically normal, but the chromosomal aberration negatively affects gametogenesis giving rise to both genetically balanced and unbalanced gametes. The latter, if involved in fertilization, result in REEL, whereas gametes with the balanced form of translocation will pass the defect into next generation. Therefore, in order to reduce the incidence of REEL, identification of translocation carriers is critical. Here, we report about a phenotypically normal 3‐year‐old Arabian mare that had repeated resorption of conceptuses prior to day 45 of gestation and was diagnosed with REEL. Conventional and molecular cytogenetic analyses revealed that the mare had normal chromosome number 64,XX but carried a non‐mosaic and non‐reciprocal autosomal translocation t(4;10)(q21;p15). This is a novel translocation described in horses with REEL and the first such report in Arabians. Previous cases of REEL due to autosomal translocations have exclusively involved Thoroughbreds. The findings underscore the importance of routine cytogenetic screening of breeding animals.