Disentangling the effect of topography and microtopography on near-ground growing-season frosts at the boreal-temperate forest ecotone (Québec,Canada)

New Forests - Permanent landscape attributes such as topography (elevation [m]) and microtopography (local variation in elevation [cm]) can increase the risk of cold air drainage down-slopes and in...     

Natural diversity of inflorescence architecture traces cryptic domestication genes in barley (<Emphasis Type="Italic">Hordeum vulgare</Emphasis> L.)

Many-grained mutants occurring spontaneously among their less well-endowed field mates may have appeared to early farmers as fortunate twists of fate foreboding wealth and abundance. In domesticated barley, the number of kernel rows in spike can be tripled by recessive mutant alleles at the Six-rowed spike 1 (vrs1) locus that abolish the suppression of lateral spikelet fertility. In another barley row-type, so called intermedium-spike (int), lateral floret size is often intermediate between six-and two-rowed types. Phenotypic and sequence analyses of our intermedium-spike collection revealed that other genes can increase the size of florets and even stimulate occasional grain setting in lateral spikelets. Here, we show that a complete six-rowed phenotype occurs in a diverse panel of intermedium-spike barley carrying wildtype Vrs1 in the presence of the Int-c.a allele of the intermedium spike-c (int-c) gene, previously considered only as a modifier of lateral spikelet fertility. Int-c.a-type alleles had arisen before domestication and are associated with the enlargement of lateral florets in wild barley, suggesting that natural selection/evolution acts towards reduced lateral floret size. Since Int-c.a cannot overcome the suppression of lateral florets in the genomic background of wild barleys, we infer the existence of other gene loci, at which novel alleles or allelic combinations were selected for after domestication, to increase grain number of barley independently of Vrs1.     

Feasibility of Locating Leakages in Sewage Pressure Pipes Using the Distributed Temperature Sensing Technology

The cost effective maintenance of underwater pressure pipes for sewage disposal in Austria requires the detection and localization of leakages. Extrusion of wastewater in lakes can heavily influence the water and bathing quality of surrounding waters. The Distributed Temperature Sensing (DTS) technology is a widely used technique for oil and gas pipeline leakage detection. While in pipeline leakage detection, fiber optic cables are installed permanently at the outside or within the protective sheathing of the pipe; this paper aims at testing the feasibility of detecting leakages with temporary introduced fiber optic cable inside the pipe. The detection and localization were tested in a laboratory experiment. The intrusion of water from leakages into the pipe, producing a local temperature drop, served as indicator for leakages. Measurements were taken under varying measurement conditions, including the number of leakages as well as the positioning of the fiber optic cable. Experiments showed that leakages could be detected accurately with the proposed methodology, when measuring resolution, temperature gradient and measurement time were properly selected. Despite the successful application of DTS for leakage detection in this lab environment, challenges in real system applications may arise from temperature gradients within the pipe system over longer distances and the placement of the cable into the real pipe system.     

Sperm Quality Over Consecutive Spermatophore Regenerations in the Pacific White Shrimp Litopenaeus vannamei

The reproductive potential of males plays an important role in the productivity of captive penaeids. Males present a large variability in their reproductive potential, and thus the selection of appropriate males for reproduction is highly desirable. The present study compares sperm quality at the beginning of the experiment (baseline values) with variations in sperm quality as a result of consecutive spermatophore regenerations. This was done to evaluate possible predictive criteria for optimal sperm quality based on morphological and biochemical criteria in pond-reared Pacific white shrimp Litopenaeus vannamei males. Sperm quality was similar between left and right spermatophore. Sperm count and proportion of normal sperm increased by 86 and 65% (P < 0.05) respectively, from baseline values to third spermatophore regeneration. Proportion of dead sperm progressively decreased with consecutive regenerations, attaining values 33% lower by the third regeneration, compared to baseline values. This indicates that no decrease in sperm quality occurs in L. vannamei during consecutive regenerations and that the existing spermatophores at stocking of males should be expelled to have higher sperm quality in regenerated spermatophores. Furthermore, this procedure allows selecting individuals with high baseline sperm quality based on significant correlations between baseline and regenerated sperm quality observed in the present work. Baseline values of glucose concentration in the hemolymph were positively correlated to baseline values of sperm count (r = 03, P < 0.05). In contrast, baseline values of several lipids in the hemolymph were negatively correlated to several traits of sperm quality at first sampling (baseline values) or at first regeneration. These results are discussed in terms of nutritional requirements of males and of possible predictive criteria of sperm quality.     

Genetic variability in meiotic gynogenetic muskellunge,Esox masquinongy (Mitchell), estimated from segregation of microsatellite alleles

Muskellunge, Esox masquinongy, is an important recreational freshwater fish native to North America. Since muskellunge populations are often maintained through stocking efforts, advances in muskellunge reproductive technologies are of direct relevance to fishery enhancement. We evaluated the efficiency of inbreeding through induced meiotic diploid gynogenesis. Eggs from six female muskellunge were manually stripped and activated using ultra violet‐irradiated yellow perch, Perca flavescens, sperm. Hydrostatic pressure shocking regimes (48 263 kPa) were then applied to the eggs to prevent second polar body expulsion producing unambiguous meiotic gynogens. Six female dams and samples of 12–20 of their gynogenetic progeny were genotyped at seven polymorphic microsatellite loci. Chromosomal recombination frequencies of microsatellite loci based on retention of heterozygosity among gynogens ranged from 0.043 to 0.839 (0.576 ± 0.237). There were no statistical differences in recombination frequency among females at any of the loci. The average inbreeding coefficient (F‐value) ranged from 0.581 to 0.979, equivalent to three to fourteen generations of full‐sibling crosses respectively. The average F‐value overall was 0.712, equivalent to between five and six generations of full‐sibling crosses. Centromere map distances of the seven microsatellite loci ranged from 2.15 to 41.95 cM and meiotic gynogenesis was useful in eliminating heterozygosity at loci proximal to the centromere, but not distal. Since the age at maturity of female muskellunge is approximately 5 years, gynogenesis may pose an expeditious alternative to traditional breeding strategies for creation of homozygous pedigrees for some loci that may be outcrossed to introduce positive heterozygosity effects in the offspring.     

Movement patterns of Brook Trout in a restored coastal stream system in southern Massachusetts

Coastal Brook Trout (Salvelinus fontinalis) populations are found from northern Canada to New England. The extent of anadromy generally decreases with latitude, but the ecology and movements of more southern populations are poorly understood. We conducted a 33‐month acoustic telemetry study of Brook Trout in Red Brook, MA, and adjacent Buttermilk Bay (marine system) using 16 fixed acoustic receivers and surgically implanting acoustic transmitters in 84 individuals. Tagged Brook Trout used the stream, estuary (50% of individuals) and bay (10% of individuals). Movements into full sea water were brief when occurring. GAMM models revealed that transitions between habitat areas occurred most often in spring and fall. Environmental data suggest that use of the saline environment is limited by summer temperatures in the bay. Movements may also be related to moon phase. Compared to more northern coastal populations of Brook Trout, the Red Brook population appears to be less anadromous overall, yet the estuarine segment of the system may have considerable ecological importance as a food resource.     

Duration and method of fixation affects the sensitivity of a digoxygenin-labelled DNA probe in detecting Kudoa thyrsites in Atlantic salmon skeletal muscle

The effect of fixative and duration of fixation on the sensitivity of a non-radioactive in situ hybridisation (ISH) protocol to detect Kudoa thyrsites small subunit ribosomal deoxyribonucleic acid (DNA) was investigated. Strong ISH reactions were detected in 5-μm sections of paraffin-embedded Atlantic salmon muscle after fixation for 1 day in Davidson's solution (DS). Reactions were weak following 3 or 5 days fixation and absent after 17 or 28 days fixation. Strong ISH reactions were observed after 1, 3 or 5 days fixation in neutral buffered formalin (NBF). The reactions were weak after 17 days and weak to nonexistent after 28 days of fixation. Reactions were consistently strong after fixation in 95% ethanol for up to 28 days. Some mature spores reacted weakly or not at all by ISH. Parasite DNA was weakly amplified by polymerase chain reaction (PCR) from paraffin-embedded muscle after 1 day of fixation in DS but not after fixation for 3, 5, 17 or 28 days. Amplified DNA was detected after fixation in NBF for 1, 3 and 5 days, but not after 17 or 28 days. In contrast, PCR consistently amplified DNA from paraffin-embedded, ethanol-fixed muscle. Caution should be used in the choice of fixative and duration of fixation when preserving Atlantic salmon tissues for molecular diagnosis of K. thyrsites.     

Effects of seasonal and environmental changes on aquaculture production in tropical Lake Volta,Ghana

Globally, aquaculture production is faced with numerous challenges, notable among which is water quality. The study determined seasonal environmental changes in Lake Volta and its implications on cage production of Nile tilapia, Oreochromis niloticus in experimental and commercial farm (Sun Woo Farm) set-ups. For each set-up, three cages were used, each measuring 81 and 162.5 m³ for experimental and commercial, respectively. The cages were stocked with 22.5 g fingerlings at a rate of 40 and 80 m^?3 in experimental and commercial cages, respectively, and fed commercial diet. The growth performance, yield, economics, and selected water quality parameters were monitored during the dry and wet seasons between November 2014 and July 2015. There were no differences in water quality parameters between dry and wet seasons (p?>?0.05). Water quality for both seasons remained within limits required for good Tilapia growth in both set-ups. There were minimal variations in growth characteristics between seasons which were not significant; however, final mean weight and yields were high in the dry seasons in both set-ups. The cost of feed and fingerling accounting for about 80% of total costs were the major components identified to affect cost of production. A higher profit index and returns on investment were observed in the dry season in both set-ups and was linked to higher survival rates in the season. Production of Nile tilapia in cages can be cultured throughout the year without any adverse effects as exhibited in similar production patterns in both experimental and commercial set-ups.     

Evidence for long‐term spatial displacement of breeding and pupping harbour seals by shellfish aquaculture over three decades

• 1. Shellfish mariculture is increasing worldwide and often occurs adjacent to marine mammal breeding and feeding habitat. To better understand breeding pinniped vulnerability to potential shellfish mariculture disturbance and displacement effects in a US National Park, potential mechanisms were explored that may affect the proportion of harbour seals (Phoca vitulina) selecting high quality haul‐out sites near shellfish aquaculture within a large colony, and overall seal utilization of that colony in relation to other regional colonies.
• 2. Seal haul‐out sites isolated from the mainland (no predator access) had higher pup:adult ratios, indicating they are generally more important for pupping. Short‐term human disturbance did not have a significant effect on spatial use, but rather spatial use was pre‐determined by general sandbar isolation. Using multiple competing hypothesis and an information‐theoretic approach, it was found that within the estuary, after removing effects of El Niño, the proportion of seals (total seals and pups only) hauled out near mariculture sites was 8 ± 2% lower during years of higher oyster harvest. Annual oyster harvest was used as a measure of aquaculture activity that could result in direct disturbance or indirect displacement of harbour seals.
• 3. At the regional scale, oyster harvest, seal counts at a nearby colony, and loss of a major haul‐out site within the estuary, best explained pup and total seal use compared with the region. Regional population size, short‐term human disturbance rate, and other factors were not important. Concurrent with higher oyster harvest, the proportion of regional seals using the estuary declined by 7 ± 2% for seal pups (–65 ± 18 total pups), and 5 ± 2% for total counts ( ? 192 ± 58 total seals). These findings (both within the estuary and at the regional scale) were essentially identical whether modelling oyster harvest as either a continuous or categorical (low/high) variable and when using either frequentist or Bayesian statistical analyses.
• 4. Marine reserves set aside for wildlife may be less effective when the highest quality breeding and pupping sites are adjacent to regular aquaculture activities. These effects may not be detectable until additional natural variation lowers the quality of nearby habitats. Published in 2011. This article is a US Government work and is in the public domain in the USA.