Incorporation of urea-derived 13C into microbial communities in four different agriculture soils

The objective of this study was to investigate changes in the composition of the soil microbial community brought about by urea application and differences in the incorporation of urea-derived C into the soil phospholipid fatty acid (PLFA) pool at differing soil pH. We selected four soils which ranged in pH from 3.9 to 7.8. ¹³C-labeled urea was applied at two concentrations 100 and 200 mg N kg^?1 which represents commonly used and high levels of application. Significant hydrolysis of applied urea occurred within 2 h; less than 2 % of urea-C was retained in the soil with one exception, the fluvo-aquic soil at pH 7.8 amended with 200 mg kg^?1 urea-N 3 days after urea application. According to principal component analysis (PCA), the effect of urea and incubation time on microbial community composition was far weaker than differences between the four soils due to their large differences in basic properties; the scores of PC2 were significantly correlated with pH values. The incorporation of ¹³C-urea to PLFAs increased with soil pH; this may be related to increases in the speciation of inorganic C into bicarbonate.¹³C label was primarily incorporated into 16:1ω5c, 16:0, and cy19:0 in red soil, pH 3.9; and into 16:1ω7c, 16:0, and 16:1ω5c in fluvo-aquic soil, pH 7.8. A wider range of PLFAs became labeled in the two paddy soils at pH 5.2 and 6.7. This suggests that the profile of PLFAs labeled from the application of ¹³C-urea may be affected by redox potential.     

Attraction and antennal response of the common wasp,Vespula vulgaris (L.), to selected synthetic chemicals in New Zealand beech forests

BACKGROUND: The common wasp, Vespula vulgaris (L.), and the German wasp, Vespula germanica (F.), are significant problems in New Zealand beech forests (Nothofagus spp.), adversely affecting native birds and invertebrate biodiversity. This work was undertaken to develop synthetic attractants for these species to enable more efficient monitoring and management. RESULTS: Seven known wasp attractants (acetic acid, butyl butyrate, isobutanol, heptyl butyrate, octyl butyrate and 2,4‐hexadienyl butyrate) were field tested, and only heptyl butyrate and octyl butyrate attracted significantly higher numbers of wasps than a non‐baited trap. Accordingly, a series of straight‐chain esters from methyl to decyl butyrate were prepared and field tested for attraction of social wasps. Peak biological activity occurred with hexyl butyrate, heptyl butyrate, octyl butyrate and nonyl butyrate. Polyethylene bags emitting approximately 18.4–22.6 mg day^?1 of heptyl butyrate were more attractive than polyethylene bags emitting approximately 14.7–16.8 mg day^?1 of heptyl butyrate in the field. Electroantennogram (EAG) studies indicated that queens and workers of V. vulgaris had olfactory receptor neurons responding to various aliphatic butyrates. CONCLUSION: These results are the first to be reported on the EAG response and the attraction of social wasps to synthetic chemicals in New Zealand beech forests and will enable monitoring of social wasp activity in beech forests. Copyright © 2009 Society of Chemical Industry     

The rapid and accurate determination of germ tube emergence site by Blumeria graminis conidia

The development of appressoria by germinating Blumeria graminis conidia depends on its germ tubes making contact with the host surface. Low angle, low temperature scanning electron microscopy showed that 80% or more of first-formed germ tubes of f. spp. hordei, tritici and avenae conidia emerged from close to the host leaf surface, and so made contact with it allowing them to become functional primary germ tubes. Light microscopy of f. sp.hordei confirmed this result and, in addition, showed that germ tubes frequently emerged close to, and contacted, various hydrophobic and hydrophilic artificial substrata. Geometric models of conidium-substratum interfaces were developed and a “surface point method” was derived to predict the frequency with which contact would result if germ tube emergence was a random phenomenon. However, observed contact frequencies were far higher (c. three to eight times) than predicted. Thus, the germ tube emergence site was determined as a response to substratum contact. In part, this appeared to be a non-specific response. Nevertheless, germ tube contact frequencies were greater on the curved surface of leaf epidermal cells than on planar surface, suggesting that specific recognition of leaf surface characteristics may promote directional emergence. The area of contact required to stimulate directional germ tube emergence was very small: contact with a microneedle tip or with a spiders’ suspension thread was sufficient for many conidia. Similarly, on leaves, the only contact is between the tips of a limited number of conidial wall projections and the edges of epicuticular leaf wax plates. Micromanipulation to roll conidia so that their original site of contact with a leaf was rotated away from it, led to the majority of first-formed germ tubes growing away from the leaf, i.e. emerging close to the site of original contact. The experiments indicated that the site of germ tube emergence is determined within 1 min of deposition. This implicated the release of conidial extracellular materials in recognition of the conidium-leaf surface contact site.     

Toll-like receptor triggering of a vitamin D-mediated human antimicrobial response

In innate immune responses, activation of Toll-like receptors (TLRs) triggers direct antimicrobial activity against intracellular bacteria, which in murine, but not human, monocytes and macrophages is mediated principally by nitric oxide. We report here that TLR activation of human macrophages up-regulated expression of the vitamin D receptor and the vitamin D-1-hydroxylase genes, leading to induction of the antimicrobial peptide cathelicidin and killing of intracellular Mycobacterium tuberculosis. We also observed that sera from African-American individuals, known to have increased susceptibility to tuberculosis, had low 25-hydroxyvitamin D and were inefficient in supporting cathelicidin messenger RNA induction. These data support a link between TLRs and vitamin D-mediated innate immunity and suggest that differences in ability of human populations to produce vitamin D may contribute to susceptibility to microbial infection.     

Assessing the impact of interfering organic matter on soil metaproteomic workflow

Soil organic matter (SOM) is biologically, chemically, and physically complex. As a major store of nutrients within the soil, it plays an important role in nutrient provision to plants. An enhanced understanding of SOM utilisation processes could underpin better fertiliser management for plant growth, with reduced environmental losses. Metaproteomics can allow the characterisation of protein profiles and could help gain insights into SOM microbial decomposition mechanisms. Here, we applied three different extraction methods to two soil types to recover SOM with different characteristics. Specifically, water-extractable organic matter, mineral-associated organic matter and protein-bound organic matter were targeted with the aim to investigate the metaproteome enriched in those extractions. As a proof-of-concept, replicated extracts from one soil were further analysed for peptide identification using liquid chromatography followed by tandem mass spectrometry. We employed a framework for mining mass spectra for both peptide assignment and fragmentation pattern characterisation. Different extracts were found to exhibit contrasting total protein and humic substance content for the two soils investigated. Overall, water extracts displayed the lowest humic substance content (in both soils) and the highest number of peptide identifications (in the soil investigated) with the most frequent peptide hits associated with diverse substrate/ligand binding proteins of Proteobacteria and derived taxa. Our framework also highlighted a strong peptidic signal in unassigned and unmatched spectra, information that is currently not captured by the pipelines employed in this study. Taken together, this work points to specific areas for optimisation in chromatography and mass spectrometry to adequately characterise SOM-associated metaproteomes.     

Effects of early re-spacing on the physical and mechanical properties of Sitka spruce structural timber

The effects of early re-spacing on the physical and mechanical properties of Sitka spruce (Picea sitchensis [Bong.] Carr.) structural-dimensioned timber were studied using material from a fully replicated 57-year-old trial located in Northern Ireland, which had been thinned at age 11 years. Basic density, distortion (spring, twist and bow), modulus of elasticity (MOE) and modulus of rupture (MOR) in bending of structural timber from four different re-spacing treatments (1.83 m × 3.66 m, 3.66 m × 3.66 m, 3.66 m × 5.49 m and 5.49 m × 5.49 m) were compared with those of timber from a control (1.83 m × 1.83 m). Re-spacing intensity had a significant effect on both modulus of elasticity (p = 0.006) and modulus of rupture (p = 0.009), but not on basic density (p = 0.379) or distortion (p > 0.200). Timber from the two widest re-spacing treatments failed to meet the requirements for the C14 strength class, while timber from the control met the requirements for the C16 strength class. Both MOE and MOR were significantly and negatively associated with knot size and frequency, which in turn increased with re-spacing intensity. Overall, re-spacing intensity only explained approximately 10% of the total amount of variation in both MOE and MOR, with most of the variation due to inter- and intra-tree differences within a treatment. Based on these results, re-spacing of Sitka spruce to a residual stand density of less than 900 trees/ha (3.33 m × 3.33 m) is not recommended if the goal of management is to produce C16 structural timber.     

Pest and disease control on intensive apple trees by overhead mobile spraying

In 3 year field experiments on pest and disease control by mobile overhead spraying of intensive Cox's Orange Pippin apple trees, overhead booms applying 1125 litres/ha and overhead mist-blowing equipment applying 562 litres/ha, each spraying two complete rows from one alley in half the normal time, were compared with conventional automatic mast spraying at 2250 litres/ha and with conventional mist-blowing at 562 litres/ha. The overhead boom application of demeton-S-methyl (0.0036% a.i.) with azinphos-methyl (0.0165% a.i.) or of fenitrothion (0.031% a.i.) at the green cluster stage gave control of the applegrass aphid, Rhopalosiphum insertum, virtually equal to that obtained by conventional application of the same insecticides. Similarly, the overhead mist applications of conventional quantities of insecticides gave equal control, but not when applying one-quarter of the normal amount of insecticides. The conventional methods generally gave better control of apple sucker, Psylla mali. In 1971, when the incidence of apple scab, Venturia inaequalis, was only moderate, the overhead boom method gave equal control to conventional spraying with both dodine/captan (0.03% a.i. and 0.094% a.i.) and benomyl (0.025% a.i.) programmes: in 1972 and 1973, when the scab incidence was heavier, the overhead boom spraying was again equal to the conventional method with the benomyl programme but was less effective with the dodine/captan programme. The overhead mist applications gave control only when the scab incidence was light. Repeated applications of dinocap emulsion (0.025% a.i.), included in the fungicide programme in 1971, gave as good control of the active stages of fruit tree red spider mite, Panonychus ulmi, when applied by the overhead methods as by conventional spraying, but application of the benomyl programme gave poor control. Mobile overhead spraying of small intensive apple trees is a promising method but needs further development before becoming fully acceptable.     

Red urine from red deer grazed on pure red clover swards

Twenty-four red deer hinds with their calves were released on to a newly established pure red clover sward and, 2 days later, red staining of the tail, perineum and hocks was observed. This was presumed to be of urinary origin. Observation of micturition showed that when urine was passed, it was a normal straw colour but it turned scarlet-red about 1 hour after exposure to air. Midstream urine remained the normal colour when held under a pure nitrogen atmosphere immediately after micturition, but it turned red when held in air in the dark, suggesting that the colour change was due to an oxidative rather than a photosensitive reaction. All deer grazing red clover were affected but this did not occur in deer grazing ryegrass/white clover swards. No adverse effects were observed in the deer grazing the red clover, and calf growth was significantly higher than on ryegrass/white clover, suggesting that the red urine had no effect on health or productivity.

Blood and urine analyses showed no signs of haemolysis, haematuria or haemoglobinuria. Preliminary chemical analyses suggest that the compounds involved are not those found in the urine of sheep grazing oestrogenic clover. The nature of the compounds have yet to be determined.     

Soundscape in a context of acoustic and landscape ecology

Soundscape ecology is being proposed as a new synthesis that leverages two important fields of study: landscape ecology and acoustic ecology. These fields have had a rich history. Running “in parallel” for over three decades now, soundscape ecology has the potential to unite these two (among other) fields in ways that provide new perspectives on the acoustics of landscapes. Each of us was involved in the “birth” of these two fields. We each reflect here on the rich history of landscape ecology and acoustic ecology and provide some thoughts on the future of soundscape ecology as a new perspective.