Response of vanilla (Vanilla planifolia A.) intercropped in arecanut to irrigation and nutrition in humid tropics of India

A 5-year field trial to assess the impact of microsprinkler irrigation and nutrition on vanilla grown as intercrop in arecanut plantation was conducted on a laterite soil. Pooled analysis indicated that microsprinkler irrigation at 1.0 Epan resulted in significantly higher green bean yield (842 kg ha⁻¹) than 0.75 Epan (579 kg ha⁻¹). Organic manure application in the form of vermicompost (720 kg ha⁻¹) and FYM (768 kg ha⁻¹) and recommended NPK (718 kg ha⁻¹) produced green bean yield at par with recycling of gliricidia prunings (625 kg ha⁻¹). Irrigation at 1.0 Epan proved superior by registering maximum benefit:cost (B:C) ratio of 2.25 compared to 1.62 at 0.75 Epan. The highest B:C ratio was obtained with recommended NPK (2.27) followed by recycling of gliricidia prunings (2.10), vermicompost (1.87), vermicompost + arecanut husk mulching (1.80) and FYM (1.64). The soil pH increased by 0.4 units in 2008 compared with the pre-experimental soil pH of 5.6 in 2004. Nutrition alone and in combination with irrigation had significant impact on soil pH. Organic manure application increased the soil pH (6.1-6.2) significantly over recommended NPK (5.6) at the end of experiment in 2008. Significant variation in soil organic carbon (SOC) was noticed due to different nutrition treatments. Application of vermicompost and FYM significantly increased the SOC content by 38-54% in 2008 over initial levels in 2004. Bray's P availability was influenced by nutrition and its interaction with irrigation. Application of FYM continuously for 4 years has resulted in significant increase in Bray's P content (41.3 mg kg⁻¹) compared to other nutrition treatments (9.4-17.2 mg kg⁻¹). Irrigation equivalent to 0.75 Epan (223 mg kg⁻¹) increased the K availability significantly over 1.0 Epan (172 mg kg⁻¹). The K availability was significantly higher in recommended NPK (416 mg kg⁻¹) than in other organic treatments (98-223 mg kg⁻¹) at 0-30 cm soil depth. Overall, vanilla responded well to irrigation and nutrition in arecanut-based cropping system with a better economic output and improved soil fertility.     

Integrated breeding approaches for improving drought and heat adaptation in chickpea (Cicer arietinum L.)

Chickpea (Cicer arietinum L.) is a dry season food legume largely grown on residual soil moisture after the rainy season. The crop often experiences moisture stress towards end of the crop season (terminal drought). The crop may also face heat stress at the reproductive stage if sowing is delayed. The breeding approaches for improving adaptation to these stresses include the development of varieties with early maturity and enhanced abiotic stress tolerance. Several varieties with improved drought tolerance have been developed by selecting for grain yield under moisture stress conditions. Similarly, selection for pod set in the crop subjected to heat stress during reproductive stage has helped in the development of heat‐tolerant varieties. A genomic region, called QTL‐hotspot, controlling several drought tolerance‐related traits has been introgressed into several popular cultivars using marker‐assisted backcrossing (MABC), and introgression lines giving significantly higher yield than the popular cultivars have been identified. Multiparent advanced generation intercross (MAGIC) approach has been found promising in enhancing genetic recombination and developing lines with enhanced tolerance to terminal drought and heat stresses.     

Screening of wild Oryza species against bacterial leaf blight (Xanthomonas oryzae py. oryza) pathotypes of Punjab (India)

One-hundred and sixty-seven accessions belonging to 13 wild Oryza species were screened against the bacterial leaf blight (BB) pathogen (Xanthomonas oryzae pv. oryza) in Punjab, India. Nine species were identified as carrying resistant genes against the four most prevalent pathotypes under conditions in Punjab. These included O. barthii (eight accessions), O. longistaminata (five accessions), O. meridionalis (three accessions), O. nivara (five accessions), O. rufipogen (two accessions), and one accession each from O. punctata, O. minuta, O. malampuzhaensis and O. latifolia. This is the first report showing the availability of BB resistance in two species namely, O. meridionalis and O. punctata. The resistant accessions, especially those with a similar genome (AA) could potentially be used for the transfer of BB resistance to well-adapted high-yielding rice cultivars.     

Susceptibility of betanodavirus in a newly established vertebra-derived cell line from Mosquitofish (Gambusia affinis)

In the present study, a new cell line from the vertebra of mosquitofish Gambusia affinis was successfully established and characterized. The cell line is named as bone Gambusia affinis (BGA) and subcultured for more than 55 passages in Leibovitz's/L15 medium supplemented with 15% FBS at 28°C. The cell line has a modal chromosome number of 48. Molecular characterization of the partial sequence of the coi gene confirmed the origin of the BGA cell line from mosquitofish. These cells exhibited epithelial morphology confirmed by the cytokeratin marker. The BGA cells showed mineralization of their extracellular matrix when stained with alizarin red and von Kossa stain. BGA cells were found to be susceptible to RGNNV and SJNNV strains of betanodavirus (NNV) showing cytopathic effect with multiple vacuolations in the cells. The RT-PCR confirmed the betanodavirus infections in BGA cells. The SEM micrograph showed the morphological changes observed in the cell during virus infection. The in vivo challenge experiment also showed the viral replicating efficiency in the Gambusia affinis with increasing viral titre. Thus, our present results show that the BGA cell line is a useful tool for isolating betanodavirus and could be used to investigate bone cell differentiation and extracellular matrix mineralization.     

Effects of dietary L‐lysine supplementation on growth,body composition and muscle‐growth‐related gene expression with an estimation of lysine requirement of GIFT tilapia

An 8‐week feeding trial was conducted with extruded practical diets containing 320 g/kg of crude protein from plant‐based sources to determine the effects of L‐lysine on growth performances, muscle‐growth‐related gene (myoD, myogenine and myostatin) expression and haemato‐biochemical responses in juvenile genetically improved farmed tilapia (GIFT). Five isonitrogenous and isoenergetic diets were formulated to contain graded levels of lysine (14.3, 16, 17.5, 19 and 20.5 g/kg of diet). Each diet was randomly assigned to triplicate groups of 30 juvenile fish (5.2 ± 0.1 g), which were fed thrice a day (9:00, 13:00 and 17:00 hr). Maximum growth performances were observed in fish fed with lysine at 19 g/kg of diet. There was no significant (p > .05) effect on whole‐body composition and amino acids profile by dietary lysine supplementation. Significant (p < .05) changes were observed in relative expression of muscle‐growth‐related genes namely myoD and myogenine and in plasma metabolites by dietary lysine supplementation. In contrast, the relative expression of myostatin was not affected by dietary lysine supplementation. Broken‐line regression analysis and second‐order polynomial regression analysis of weight gain and N gain against dietary lysine levels showed that the dietary lysine requirement for juvenile GIFT tilapia was 18–18.3 g/kg of diet and 19.3–19.5 g/kg of diet, respectively.     

Effect of Feronia limonia on mosquito larvae.

Bioassay guided fractionation of the acetone extract of Feronia limonia dried leaves afforded a potent mosquito larvicide, identified as n-hexadecanoic acid and found to be effective against fourth instar larvae of Culex quinquefasciatus, Anopheles stephensi and Aedes aegypti, with LC50 of 129.24, 79.58 and 57.23 ppm, respectively.     

Functional genomic analysis of RNA interference in C. elegans

RNA interference (RNAi) of target genes is triggered by double-stranded RNAs (dsRNAs) processed by conserved nucleases and accessory factors. To identify the genetic components required for RNAi, we performed a genome-wide screen using an engineered RNAi sensor strain of Caenorhabditis elegans. The RNAi screen identified 90 genes. These included Piwi/PAZ proteins, DEAH helicases, RNA binding/processing factors, chromatin-associated factors, DNA recombination proteins, nuclear import/export factors, and 11 known components of the RNAi machinery. We demonstrate that some of these genes are also required for germline and somatic transgene silencing. Moreover, the physical interactions among these potential RNAi factors suggest links to other RNA-dependent gene regulatory pathways.     

Identification of QTLs for BYDV tolerance in bread wheat

We searched for QTLs involved in tolerance to barley yellow dwarf (BYD), a serious viral disease of small grain cereals in two wheat populations, Opata × Synthetic (ITMI)and Frontana × INIA66 (F × I), for which marker data had previously been generated. The populations were evaluated in replicated field trials under artificial inoculation with a BYDV-PAV-Mex isolate and under disease-free conditions. Disease symptoms (yellowing, dwarfism and biomass reduction) were visually recorded and agronomic traits (number of tillers,height, biomass, yield and thousand-kernel weight) were measured on five plants per plot. Phenotypic data on all evaluated traits showed normal distribution with high correlation between visual estimates and measured values. Heritabilities were mostly moderate to high in the 114 lines of the ITMI population, and from low to moderate in the 117 lines of the F × I population. QTL analyses were based on genetic maps containing 443 loci for the ITMI population and 317 loci for the F × I population. Using composite interval mapping, 22 QTLs in the ITMI population and seven in the F × I population were detected, explaining9.8–43.3% of total phenotypic variation (σ² _P)per agronomic trait in the first population, and 4.1–13.7% in the second. Individual QTLs explained less than 15.8%of σ² _P. In the F × I population a minor QTL explaining 7% of σ² _P for yellowing was detected on the short arm of 7D, linked to leaf tip necrosis, a morphological marker for linked genes Bdv1, Yr18 andLr34. A QTL consistently detected for several traits on 2D in the ITMI population and on the short arm of group 6 chromosome(6S) in F × I explained 10–15% of σ² _P. The large number of QTLs having mostly small effects and the continuous distribution of all evaluated traits confirmed the polygenic nature and complexity of BYD tolerance in wheat. This revised version was published online in August 2006 with corrections to the Cover Date.     

Characterization of the interspecific cross Cicer anetinum L. ×C. judaicum (Boiss)

An interspecific cross involving Cicer anetinum L. and C. judaicum (Boiss) No. 182 was established. The F₁ could be distinguished from the parents by its prostrate growth habit at the seedling stage and through isozyme patterns for peroxidases and esterases. The inheritance of PRX-3 was found to be relatively simple and behaved as a monomer. Meiotic studies indicated the occurrence of six bivalents and four uni-valents in about 6% of F₁ PMC's at metaphase I, but normal 8–8 chromosomal distribution in anaphase I, indicating near complete homology. The F₁ hybrid was characterized for three morphological and six agronomical characters. A large F₂ was studied for secondary branches per plant, 100-seed weight (g), pods per plant, and grain yield per plant (g). Distributions of F₂ for pod number and grain yield displayed high C.V. and were highly skewed in a positive direction. F₂ recombinants were isolated with a very large number of secondary branches and a high pod number and yield. Such wide variability is not normally encountered in intevarietal crosses.     

The challenges of maintaining wheat productivity: pests, diseases, and potential epidemics

Knowing pests and diseases that may cause injuries and are likely to affect plant health and quality is critical to minimizing the gap between attainable yield and actual yield. In this paper, we highlight concepts and strategies aimed at controlling major biotic constraints affecting wheat in intensive production systems and present emerging challenges, with a special attention to the developing world. Disease epidemics result from the combination of inoculum, favorable environment, and host susceptibility. Changes in cropping systems as a result of adoption of conservation agriculture may have serious implications. Necrotrophic pathogens such as those responsible for tan spot or septorias are likely to emerge, and Fusarium head blight may increase. However, resistance breeding combined with rotations, timely sowing, and irrigation or even fungicide utilization, if affordable, are part of integrated crop management practices that can minimize losses. In South Asia, the effect of spot blotch, a devastating foliar disease caused by Cochliobolus sativus, can be minimized by reducing physiological stress through timely sowing and adequate use of fertilizers, which demonstrates the complex relationships among crop physiology, disease resistance, and yield. Although some root rots that induce premature death of tillers in cooler high-yielding humid environments can be important, the dryland crown rot (Fusarium spp.), common root rot (C. sativus), and the cereal nematode (Heterodera spp. and Pratylenchus spp.) should not be ignored. These are all known to be much more damaging under suboptimal moisture (rainfed or supplementary irrigation), particularly where plant growth is stressed. Climate change is likely to modify the wheat disease spectrum in some regions, and pathogens or pests considered unimportant today may turn out to be potential new threats in future.