Developmentally regulated piRNA clusters implicate MILI in transposon control

Nearly half of the mammalian genome is composed of repeated sequences. In Drosophila, Piwi proteins exert control over transposons. However, mammalian Piwi proteins, MIWI and MILI, partner with Piwi-interacting RNAs (piRNAs) that are depleted of repeat sequences, which raises questions about a role for mammalian Piwi's in transposon control. A search for murine small RNAs that might program Piwi proteins for transposon suppression revealed developmentally regulated piRNA loci, some of which resemble transposon master control loci of Drosophila. We also find evidence of an adaptive amplification loop in which MILI catalyzes the formation of piRNA 5' ends. Mili mutants derepress LINE-1 (L1) and intracisternal A particle and lose DNA methylation of L1 elements, demonstrating an evolutionarily conserved role for PIWI proteins in transposon suppression.     

Formation of regulatory patterns during signal propagation in a Mammalian cellular network

We developed a model of 545 components (nodes) and 1259 interactions representing signaling pathways and cellular machines in the hippocampal CA1 neuron. Using graph theory methods, we analyzed ligand-induced signal flow through the system. Specification of input and output nodes allowed us to identify functional modules. Networking resulted in the emergence of regulatory motifs, such as positive and negative feedback and feedforward loops, that process information. Key regulators of plasticity were highly connected nodes required for the formation of regulatory motifs, indicating the potential importance of such motifs in determining cellular choices between homeostasis and plasticity.     

Rates of behavior and aging specified by mitochondrial function during development

To explore the role of mitochondrial activity in the aging process, we have lowered the activity of the electron transport chain and adenosine 5'-triphosphate (ATP) synthase with RNA interference (RNAi) in Caenorhabditis elegans. These perturbations reduced body size and behavioral rates and extended adult life-span. Restoring messenger RNA to near-normal levels during adulthood did not elevate ATP levels and did not correct any of these phenotypes. Conversely, inhibiting respiratory-chain components during adulthood only did not reset behavioral rates and did not affect life-span. Thus, the developing animal appears to contain a regulatory system that monitors mitochondrial activity early in life and, in response, establishes rates of respiration, behavior, and aging that persist during adulthood.     

Use of therapeutic plasmapheresis in a case of canine immune-mediated hemolytic anemia

Objective – To investigate the clinical application and potential utility of plasmapheresis in canine immune-mediated hemolytic anemia.
Case Summary – A 7-year-old spayed female Maltese diagnosed with immune-mediated hemolytic anemia was initially treated with prednisone, cyclosporine, and received multiple transfusions of packed RBC. Because of the progression of clinical signs despite traditional medical therapy, plasmapheresis was initiated. Plasma immunoglobulin G and immunoglobulin M levels were measured before, during, and after treatment to help determine if there had been a significant decrease in immunoglobulin levels with plasmapheresis. Plasmapheresis was successfully performed over a 2.5-hour period in this dog with minimal complications. Hypocalcemia was identified as a known complication of circuit anticoagulation, and was corrected through calcium supplementation. Post-plasmapheresis there was a decrease in immunoglobulin G and immunoglobulin M levels, and the patient showed clinical improvement. Following discharge the dog had no known complications of therapy, and had complete resolution of the anemia.
New or Unique Information Provided – Plasmapheresis was performed successfully with minimal complications. Because transfusion requirements appeared to be reduced, and the procedure was well tolerated, there may be a place for this modality in severe cases to act as a bridge until medical therapy takes full effect. Because of the cost of performing this therapy, and the potential requirement for multiple treatments, it should be reserved for selected patients.     

A Review of Probiotics in Shrimp Aquaculture

Development of shrimp aquaculture has been associated with increases in infectious diseases and environmental degradation. An effective alternative to chemicals and antibiotics used for the prevention of these problems is to administer probiotics into the rearing system. Three bacterial genera, Bacillus, Vibrio, and Pseudomonas, are commonly administered as probiotics in shrimp aquaculture. Candidate probiotics are species specific and need to be tested for their effectiveness for certain species in in vitro and in vivo. Supplementation into feed is more effective in conveying probiotics into animals compared to direct application into rearing systems. Overdosage or prolonged administration of probiotics can induce immunosuppression. A cell-density of 10⁵ colony-forming units (CFU) per ml is widely recommended. A combination of probiotics results in better outcomes for the host than individual probiotics. Probiotics improve water quality while reducing pathogenic bacteria. Probiotics show positive effects through an improvement in the physiological and immune responses of shrimps. Probiotics are increasingly becoming important and more common in any organic shrimp farming.     

Effects of stocking density on the nutrient budget and growth of the western king prawn (Penaeus latisulcatus Kishinouye) in a recirculating aquaculture system

Intensification in the commercial culture of prawns can have a significant impact on the water quality and hence on the survival, growth and the surrounding environment. The present study aims to evaluate the effects of stocking density on the water quality and performance of the western king prawns (Penaeus latisulcatus) and the nutrient budget of the culture environment. Four stocking densities of 4, 8, 16 and 32 prawns m^?2 were tested in 12 recirculating systems. Prawn weight and specific growth rate increased with decreasing stocking density, while the survival rate showed the reverse trend. The mean total ammonia nitrogen, nitrate nitrogen, total phosphorus and soluble reactive phosphorus were significantly higher (P<0.05) at the higher stocking density. The nutrient budget revealed that the prawns could assimilate only 9.34–20.13% nitrogen and 4.97–11.25% phosphorus of the total nutrient inputs. The drained water at harvest was the major sink of phosphorus and nitrogen at stocking densities of 4, 8 and 16, which accounted for 45.59–64.82% and 44.28–65.62% of the total inputs, respectively, while a significant proportion of nitrogen sunk into the sediment at 32 prawns m^?2. The study suggested that the stocking densities of western king prawns can be up to 16 prawns m^?2 in the recirculating water environment.     

Effects of variation in dietary contents of selenium and vitamin E on growth and physiological and haematological responses of yellowtail kingfish,Seriola lalandi

The effects of dietary selenium (Se) and vitamin E and their interaction in the nutrition of yellowtail kingfish, Seriola lalandi, were investigated. Six dietary treatments were prepared in a 3 × 2 factorial arrangement (not supplemented or supplemented with Se at 1 or 2 mg kg^?1 × supplemented with vitamin E at 40 or 180 mg kg^?1). A group of fish in triplicate were fed one of the six experimental diets for 6 weeks, and their growth performance, haematological and immune responses were measured. The results revealed positively interactive effects between dietary Se and vitamin E in yellowtail kingfish. Se significantly increased weight gain of fish fed diets low in vitamin E, but not high in vitamin E. Simultaneous supplementation of both micronutrients resulted in significant increase in serum bactericidal activity. There was no significant effect of Se or vitamin E on survival, feed intake, feed conversion ratio, haematocrit, white blood cell counts and fillet proximate composition. However, Se and vitamin E contents in fillets were significantly responsive to dietary Se and vitamin E, respectively. The supplemental level of Se at 2 mg kg^?1 significantly increased red blood cell counts and haemoglobin concentrations, while lysozyme activity in skin mucus was significantly stimulated by vitamin E. The findings of Se and vitamin E supplementation in this study can be applied to improve growth and health indices of yellowtail kingfish.     

Antibiofilm potential of a tropical marine Bacillus licheniformis isolate: role in disruption of aquaculture associated biofilms

Microbial biofilms are important in aquaculture industries as they resist antibiotic treatments. In this study, we have investigated the antibiofilm potential of a tropical marine culture Bacillus licheniformis D1 (containing an antimicrobial protein BLDZ1) against two aquaculture associated pathogens namely, Vibrio harveyi and Pseudomonas aeruginosa. Both the test cultures formed biofilms on polystyrene and glass surfaces. The cell free supernatant (CFS) of B. licheniformis inhibited V. harveyi and P. aeruginosa biofilms on polystyrene surfaces up to around 80% and 78% respectively. In addition, the CFS disrupted pre‐formed biofilms of test cultures by about 73%. Fluorescence and scanning electron microscope analysis confirmed the antibiofilm potential of the CFS. The cell free supernatant displayed antiadhesive activity that inhibited the initial attachment of the bacteria during the process of biofilm formation. In addition, the CFS exhibited antimicrobial activity and mediated cell death via cytoplasmic membrane disruption.     

Effects of probiotics (Pseudomonas synxantha and Pseudomonas aeruginosa) on the growth, survival and immune parameters of juvenile western king prawns (Penaeus latisulcatus Kishinouye, 1896)

The effects of two selected probiotics ( Pseudomonas synxantha and Pseudomonas aeruginosa ) on the specific growth rate (SGR), survival and immune parameters of juvenile western king prawns ( Penaeus latisulcatus ) were examined for 84 days. Pseudomonas synxantha and P. aeruginosa were either applied into the rearing medium or supplemented in the formulated feed at a concentration of 10⁵ colony forming unit (CFU) mL⁻¹ for each probiotic. The results showed that applications of the probiotics resulted in no significant difference ( P >0.05) in the SGR and survival of the prawns, but significantly decreased the food conversion ratios ( P <0.05) compared with the control where no probiotics were applied. The supplement of the probiotics with the formulated feed enhanced the probiotic numbers in the intestines of the prawns and low bacteria numbers in the haemolymph. The prawns were significantly ( P <0.05) healthier, as indicated by the immune response obtained when both probiotics were given in combination compared with when individual probiotics were used. When applied singly, P. aeruginosa resulted in a higher health status of the prawns compared with P. synxantha . Overall, equal combinations (10⁵ CFU mL⁻¹) and volumes of P. synxantha and P. aeruginosa used as a supplement in the formulated feed resulted in an improvement in the health of the juvenile western king prawns.     

Effects of an oil-based substrate (The Water Cleanser™) and bacterial additives on nitrogen and phosphorous dynamics in freshwater crayfish (Cherax cainii,Austin and Ryan 2002) aquaculture

Two experiments were conducted to evaluate the efficacy of an oil-based substrate, The Water Cleanser? (TWC). The first experiment studied the effects two substrates of different oil composition (TWC, TWC?+), and a commercial bacterial additive (Bio-Aid) on concentrations of nitrogen and phosphorous in indoor aquaria. The second experiment studied the effects of TWC, a bacterial additive, and a combination (TWC?+?B) on concentrations of nitrogen and phosphorous, phytoplankton abundance and diversity in outdoor freshwater crayfish (Cherax cainii, Austin and Ryan, Invertebr Syst 16:357–367, 2002) tanks. In the first experiment, the concentration of TAN decreased more rapidly with Bio-Aid, whilst the maximum concentrations of NO₂-N and NO₃-N were reduced with the substrates. The concentration of orthophosphate was reduced in aquaria with TWC?+?. In the second experiment, concentrations of TAN, NO₂-N, NO₃-N and total phosphate were not significantly affected by TWC. After addition of TWC?+?B, there was a significant decrease in the concentrations of nitrate and total phosphate, and a higher abundance of phytoplankton was maintained than with other treatments. Additionally, a population Bacillus sp. was found on the substrate surface. TWC had no adverse effects on phytoplankton abundance or diversity, or C. cainii physiology, weight gain or survival. TWC and TWC?+?were effective bioremediators of eutrophic water, whilst a combination of TWC?+?B was effective in short term bioremediation and in promoting phytoplankton abundance in C. cainii tank culture.