A New Micromonospora Strain with Antibiotic Activity Isolated from the Microbiome of a Mid-Atlantic Deep-Sea Sponge

To tackle the growing problem of antibiotic resistance, it is essential to identify new bioactive compounds that are effective against resistant microbes and safe to use. Natural products and their derivatives are, and will continue to be, an important source of these molecules. Sea sponges harbour a diverse microbiome that co-exists with the sponge, and these bacterial communities produce a rich array of bioactive metabolites for protection and resource competition. For these reasons, the sponge microbiota constitutes a potential source of clinically relevant natural products. To date, efforts in bioprospecting for these compounds have focused predominantly on sponge specimens isolated from shallow water, with much still to be learned about samples from the deep sea. Here we report the isolation of a new Micromonospora strain, designated 28ISP2-46^T, recovered from the microbiome of a mid-Atlantic deep-sea sponge. Whole-genome sequencing reveals the capacity of this bacterium to produce a diverse array of natural products, including kosinostatin and isoquinocycline B, which exhibit both antibiotic and antitumour properties. Both compounds were isolated from 28ISP2-46^T fermentation broths and were found to be effective against a plethora of multidrug-resistant clinical isolates. This study suggests that the marine production of isoquinocyclines may be more widespread than previously supposed and demonstrates the value of targeting the deep-sea sponge microbiome as a source of novel microbial life with exploitable biosynthetic potential.     

Effect of buckwheat (Fagopyrum esculentum) on soil‐phosphorus availability and organic acids

As a cover crop, buckwheat (Fagopyrum esculentum) may increase soil‐P availability. Buckwheat was grown in low‐P and P‐fertilized field plots, and organic anions were measured in rhizosphere soil. Soil‐P availability was not affected by buckwheat, but the concentration of rhizosphere tartrate^2– was significantly higher (p < 0.005) in low‐P vs. P‐fertilized plots. This suggests that organic‐anion root exudation may have a role in buckwheat‐rhizosphere P dynamics.     

Characteristics of Modern Triticale Quality: The Relationship Between Carbohydrate Properties, α‐Amylase Activity,and Falling Number

Triticale is a high‐yielding cereal crop with potential to increase grain production for human consumption over the coming decades. Minimal targeted selection has been conducted to produce cultivars with α‐amylase, amylose, and nonstarch polysaccharide (NSP) content appropriate for a milling market. Nevertheless, genotypic variability exists. Standard quality screening methods used for wheat, including pasting properties, falling number, and quantification of α‐amylase activity were employed to assess the environmental and genotypic variability among modern triticale cultivars and to investigate the suitability of these tests for triticale. Samples of 11 triticale lines from four environments were compared with five wheat cultivars bred for various end uses. Triticale exhibited a greater range than wheat for most tested variables, and the ranges usually overlapped. Triticale exhibited higher NSP content, generally equivalent pasting properties, higher α‐amylase activity, and lower falling number on average compared with wheat checks. However, low falling number was not indicative of high α‐amylase activity; the relationship with NSP level and other factors is discussed, and caution is recommended for interpretation of previous research. Three cultivars with equivalent α‐amylase activity to wheat and two with partially waxy starch were identified. These findings have great significance for research and the emerging triticale milling market.     

Pathogenicity assays on Arabidopsis thaliana infected with Xanthomonas campestris pv. campestris seize aggressiveness variation at the race and isolate levels

European Journal of Plant Pathology - Black rot of crucifers caused by Xanthomonas campestris pv. campestris (Xcc) is one of the most destructive diseases affecting vegetable Brassica crops, as...     

Mapping and predicting a candidate gene for flesh color in watermelon

The color of watermelon flesh is an important trait determined by a series of carotenoids. Herein, we used Cream of Saskatchewan(pale yellow flesh) and PI 186490(white flesh) as parental materials for an F2 segregation and initial mapping using the bulked segregant analysis sequencing(BSA-seq) strategy. The BSA results revealed a flesh colorrelated QTL that spans approximately 2.45 Mb on chromosome 6. This region was preliminarily positioned in a 382-kb segment, and then narrowed down into a 66.8-kb segment with 1 260 F2 individuals. A total of nine candidate genes were in the fine mapping interval, but only Cla007528(encoding chlorophyllase) had non-synonymous mutations and was significantly expressed between the parental materials throughout flesh development. We also checked the expression patterns of the carotenoid metabolic pathway genes based on RNA-seq data and qRT-PCR validation. Three genes in the xanthophyll cycle(ClCHYB, ClNCED-1 and ClNCED-7) exhibited differential expression patterns between the two parental lines at different flesh color formation stages. ClPSY1, ClPDS, ClZDS, ClCHXE, ClCRTISO and ClLCYB also exhibited clearly different expression patterns accompanied by carotenoid accumulation.     

A new vision-based approach to differential spraying in precision agriculture

One of the objectives of precision agriculture is to minimize the volume of herbicides by using site-specific weed management systems. To reach this goal, two major factors need to be considered: (1) the similarity of spectral signatures, shapes, and textures between weeds and crops and (2) irregular distribution of weeds within the crop. This paper outlines an automatic computer vision method for detecting Avena sterilis, a noxious weed growing in cereal crops, and differential spraying to control the weed. The proposed method determines the quantity and distribution of weeds in the crop fields and applies a decision-making strategy for selective spraying, which forms the main focus of the paper. The method consists of two stages: image segmentation and decision-making. The image segmentation process extracts cells from the image as the low-level units. The quantity and distribution of weeds in the cell are mapped as area and structural based attributes, respectively. From these attributes, a multicriteria decision-making approach under a fuzzy context allows us to decide whether any given cell needs to be sprayed. The method was compared with other existing strategies.     

‘Microbigation’: delivery of biological control agents through drip irrigation systems

The uniform and precise application of microbial particles close to the target organism and to the plant to be protected can increase the success of a biological control treatment. The use of systems or technologies which are usually available in agriculture could influence the acceptability of biocontrol agents by farmers, and enlarge the market. A pilot system was realized using dripper lines, drippers, filters and other tools commonly used in irrigation and precision agriculture in the greenhouse to evaluate their suitability for applying and distributing microbial biocontrol agents. Conidial suspensions of marketed or marketable agents were used, i.e. Fusarium oxysporum, F. solani, Trichoderma harzianum and Paecilomyces lilacinus. The experiments carried out demonstrated that conidial suspensions (10⁶ conidia ml⁻¹) can pass through the drippers without causing clogging, regardless of their size, and remained viable. The term ‘microbigation’ is here proposed for this kind of microbial application technique.     

Evidence that the negative relationship between seed mass and relative growth rate is not physiological but linked to species identity: a within-family analysis of Scots pine

Seed mass and relative growth rate (RGR) are important determinants of early seedling growth, and hence seedling establishment. Although a positive interspecific relationship between seed mass and seedling dry mass is well established, much less is known about the relationships among seed mass, seedling mass and RGR within species. We examined relationships among seed mass, seedling mass and RGR within and among maternal plant lines of Scots pine (Pinus sylvestris L.). To assess the effects of seed mass and maternal origin on RGR, individual seeds from two seed crops (years 2004 and 2005) of ten maternal plants growing under nursery conditions were weighed and then germinated. Seed mass was strongly determined by maternal plant, and seedling mass was largely determined by seed mass, with a positive correlation between these variables both across and within maternal plants. In contrast, RGR was weakly related to seed mass, with no consistent pattern in the sign of the relationship. It is well known that species differ in RGR and that RGR is related to seed mass across species. Lack of consistent evidence for this relationship within maternal lines, and for Scots pine overall, suggests that the relationship is not directly causal, but reflects consistent evolutionary covariation in these two physiologically independent traits.     

The evolution of lentil (Lens culinaris Medik.) cultivation in Italy and its effects on the survival of autochthonous populations

At the beginning of the 20th Century Italy was one of the most important producers of lentil in the Mediterranean basin. Presently, this pulse is mainly cultivated in marginal areas of Central and Southern Italy and in some small islands. As a result of the reduced attention devoted to lentil, several autochthonous populations have disappeared together with the traditions related to their cultivation. Moreover, how long the cultivation of those still grown today will continue is unpredictable. Governmental and local associations have a time window for anticipating a possible epoch when to grow these landraces will be no longer profitable. In the last decades the Germplasm Institute of the National Research Council (Bari, Italy) and the Institut für Pflanzengenetik und Kulturpflanzenforschung (Gatersleben, Germany) have collected 63 lentil populations in Italy, presently stored ex situ. The evaluation of this collection has shown the existence of an appreciable morphological, agronomic and genetic diversity that could foster future breeding programmes. It is concluded that there is an urgent need to promote the survival of lentil populations in situ, since this will further support the adaptation and evolution of autochthonous genotypes in their original environments.     

Anaerobiosis in soybean root nodules under water stress

Soybean nodules subjected to water stress showed lowered C₂H₂ reducing activity and O₂ uptake, but enhanced CO₂ and ethanol evolution. Similar results were obtained with waterlogged nodules. The effects of stress could be partially or completely overcome by increaseing the O₂ supply. It is concluded that both water deficiency and excess may depress nitrogenase activity (C₂H₂ reduction) by restricting supplies of intermediates from aerobic pathways. At the same time fermentative pathways are stimulated and could lead to inhibitory concentrations of ethanol being produced. Both symbionts possess systems for ethanol production.