A single progenitor population switches behavior to maintain and repair esophageal epithelium

Diseases of the esophageal epithelium (EE), such as reflux esophagitis and cancer, are rising in incidence. Despite this, the cellular behaviors underlying EE homeostasis and repair remain controversial. Here, we show that in mice, EE is maintained by a single population of cells that divide stochastically to generate proliferating and differentiating daughters with equal probability. In response to challenge with all-trans retinoic acid (atRA), the balance of daughter cell fate is unaltered, but the rate of cell division increases. However, after wounding, cells reversibly switch to producing an excess of proliferating daughters until the wound has closed. Such fate-switching enables a single progenitor population to both maintain and repair tissue without the need for a "reserve" slow-cycling stem cell pool.     

Acute and Chronic Effects of Nitrite on White Shrimp, Litopenaeus vannamei, Cultured in Low-Salinity Brackish Water

The marine white shrimp Litopenaeus vannamei is widely cultured. Recently, farmers have begun to culture this shrimp in low-salinity brackish water (< 6 g/L). The intensification of shrimp culture often results in occurrences of elevated nitrite concentration during the growing season. Nitrite is toxic to shrimp and exposure to high concentrations may cause retarded growth and mortalities. The current study was aimed at investigating the acute and chronic toxicity of nitrite to L. vannamei grown in low-salinity (2 g/L) brackish water. Studies of the 96-h EC50 and LC50 values of nitrite were performed to determine the acute toxicity, and an aquarium growth study (2 d post exposure to elevated nitrite concentrations) was conducted to evaluate the chronic effects of nitrite on shrimp production. The 96-h EC50 and LC50 values for juvenile L. vannamei grown in water of 2 g/L salinity was about 9 mg/L NO₂-N, suggesting a safe concentration for shrimp production in ponds to be less than 0.45 mgIL NO₂-N. Exposing shrimp to nitrite concentration of 4 mg/L for 2 d reduced their growth but did not affect their survival.     

Identification of malodorous, a wild species allele affecting tomato aroma that was aelected against during domestication

Vegetable cultivation favored the inclusion of pleasant aromas in the produce, whereas unpleasant aromas were selected against. Introgression lines, generated by hybridization of a cultivated tomato (Lycopersicon esculentum) to its wild relative L. pennellii, were used to map quantitative trait loci (QTL) that influence tomato aroma. A marked undesirable flavor was detected by taste panelists in L. pennellii fruits and was related to an introgressed segment from the short arm of chromosome 8. Analysis of the ripe fruits' volatiles of chromosome 8 introgressed lines revealed an up to 60-fold increase in the levels of 2-phenylethanol and phenylacetaldehyde, as compared to the cultivated tomato. This effect was associated with a 10 cM segment originating from the wild species. Although 2-phenylethanol and phenylacetaldehyde have favorable contribution to tomato aroma when present at low levels, phenylacetaldehyde has a nauseating objectionable aroma when present in levels >0.005 ppm. The loss of the ability to produce high levels of phenylacetaldehyde contributed to the development of desirable aroma of the cultivated tomato. The findings provide a genetic explanation for one of the aroma changes that occurred during the domestication of the tomato.     

Behaviour of ddt in three soils exposed to solar radiations under different conditions

Volatilization, mineralization, degradation and binding of soil-applied [¹⁴C]DDT were studied in three different soils from a tropical region of southern India subjected to solar irradiation and flooding for a period of 42 days. The soil types–red cotton soil, nursery soil and canal bank soil–differed in their organic carbon content, pH and texture. Under unflooded conditions, volatile losses were highest in the sandy canal bank soil. Flooding significantly enhanced volatilization, and this effect was maximal in the nursery soil, which had the highest organic carbon. The soils fully exposed to solar radiations in quartz tubes registered 1.5-1.8 times greater volatility. The volatilized organics contained appreciable quantities of DDE under both flooded and unflooded conditions. In addition, greater quantities of DDD volatilized from the flooded systems. The rate of formation of DDE was faster when soils were irradiated in quartz tubes. Mineralization remained minimal throughout the period of exposure and flooding the soil appeared to reduce further the [¹⁴C]carbon dioxide evolution. Canal bank soil exhibited the least mineralization and degradation. The data indicate that volatilization was significantly influenced by solar radiation and flooding to a much greater degree than by the differences in soil properties. Binding of DDT to soil was significantly increased by flooding the soil, thus leaving up to 33% of the initial DDT as bound residues in the nursery soil.     

Analysis of association between various fertility indicators and production traits in Mehsana buffaloes

Tropical Animal Health and Production - Female fertility in domestic animals in India has exhaustively suffered owing to indiscriminate breeding with single objective of increasing milk production....     

Virulence repertoire of Shiga toxin-producing Escherichia coli (STEC) and enterotoxigenic Escherichia coli (ETEC) from diarrhoeic lambs of Arunachal Pradesh,India

A total of 107 faecal samples were collected from diarrhoeic lambs of high altitude terrains (2,000 to 5,000 m above the mean sea level) of Tawang and West Kameng districts of Arunachal Pradesh, India. Total 234 Escherichia coli were isolated and further subjected to PCR for the study of virulence repertoire characteristics of Shiga toxin-producing E. coli (STEC) and enterotoxigenic E. coli (ETEC). Out of the 234 isolated E. coli, 32% were found positive for STEC, and 9% were carrying virulence gene for ETEC. The isolated STEC serogroups were O159, O127, O120, O113, O60, O30, O25, O8 and O2. Of all the 74 STEC strains, PCR showed that 18% isolates carried stx ₁ , 26% possessed stx ₂ and 47% produced positive amplicon for both. Other virulent attributes like intimin (eaeA), enterohaemolysin (ehxA) and STEC auto-agglutinating adhesin (saa) were present in 18%, 43% and 44% of the isolates, respectively. The isolated ETEC serogroups were O172, O170, O159, O146, O127, O120, O113, O86, O75, O60, O30, O25, O8, O2, OR and OUT. Of the 22 ETEC-positive isolates, 23%, 18% and 4.5% possessed the gene only for LT, STa and STb, respectively, whereas 54% carried genes for both LT and STb. Some serogroups of E. coli like O159, O127, O120, O113, O60, O30, O25, O8 and O2 possessed genes for both Shiga toxin and enterotoxin. This study is the first report of ETEC isolation from diarrhoeic lambs in India. The moderately high proportion of STEC and ETEC in the diarrhoeic lambs implicated that these animals are important reservoir of STEC and ETEC. This is really a grave concern for the ‘brokpas’ and nomads (shepherds) who share a close relationship with this animals for their livelihood. This study also indicates that ETEC may be a major cause for frequent diarrhoeal episodes in lambs of this region.     

An improved protocol for efficient transformation and regeneration of diverse indica rice cultivars

Background

Common bean (Phaseolus vulgaris L.) is a crop of economic and nutritious importance in many parts of the world. The lack of genomic resources have impeded the advancement of common bean genomics and thereby crop improvement. Although concerted efforts from the "Phaseomics" consortium have resulted in the development of several genomic resources, functional studies have continued to lag due to the recalcitrance of this crop for genetic transformation.

Results

Here we describe the use of a bean pod mottle virus (BPMV)-based vector for silencing of endogenous genes in common bean as well as for protein expression. This BPMV-based vector was originally developed for use in soybean. It has been successfully employed for both protein expression and gene silencing in this species. We tested this vector for applications in common bean by targeting common bean genes encoding nodulin 22 and stearoyl-acyl carrier protein desaturase for silencing. Our results indicate that the BPMV vector can indeed be employed for reverse genetics studies of diverse biological processes in common bean. We also used the BPMV-based vector for expressing the green fluorescent protein (GFP) in common bean and demonstrate stable GFP expression in all common bean tissues where BPMV was detected.

Conclusions

The availability of this vector is an important advance for the common bean research community not only because it provides a rapid means for functional studies in common bean, but also because it does so without generating genetically modified plants. Here we describe the detailed methodology and provide essential guidelines for the use of this vector for both gene silencing and protein expression in common bean. The entire VIGS procedure can be completed in 4-5 weeks.