Analysis of the triple gene block sequence in an important melon pathogen,Melon yellowing-associated virus

A novel viral disease of melon, caused by Melon yellowing-associated virus (MYaV), has become one of the most serious problems for melon production in Brazil. Despite its importance, little is known about the genome sequence of the virus. In this study, the triple gene block genomic region including the 3′-end region of an isolate of MYaV was elucidated (ca. 3.1 kb). Sweet potato chlorotic fleck virus, a newly suggested carlavirus species, was the most closely related virus with 62% nucleotide identity. The presence of two heptanucleotide-motifs for subgenomic RNA synthesis was confirmed in this sequence.     

Carbon Stocks and Fluxes in Rangelands of the Río de la Plata Basin

Grasslands are one of the most modified biomes on Earth. Land use changes had a large impact on carbon (C) stocks of grasslands. Understanding the impact of land use/land cover changes on C stocks and fluxes is critical to evaluate the potential of rangeland ecosystem as C sinks. In this article we analyze C stocks and fluxes across the environmental gradients of one of the most extensive temperate rangeland areas: the Río de la Plata Grasslands (RPG) in South America. The analysis summarizes information provided by field studies, remote sensing estimates, and modeling exercises. Average estimates of aboveground net primary production (ANPP) ranged from 240 to 316 g C· m^?2·yr^?1. Estimates of belowground NPP (BNPP) were more variable than ANPP and ranged from 264 to 568 g C· m^?2·yr^?1. Total Carbon ranged from 5 004 to 15 008 g C· m^?2. Plant biomass contribution to Total Carbon averaged 13% and varied from 9.5% to 27% among sites. The largest plant C stock corresponded to belowground biomass. Aboveground green biomass represented less than 7% of the plant C. Soil organic carbon (SOC) was concentrated in the slow and passive compartments of the organic matter. Active soil pool represented only 6.7% of the SOC. The understanding of C dynamics and stocks in the RPG grasslands is still partial and incomplete. Field estimates of ANPP and BNPP are scarce, and they are not based on a common measurement protocol. Remotely sensed techniques have the potential to generate a coherent and spatially explicit database on ANPP. However, more work is needed to improve estimates of the spatial and temporal variability of radiation use efficiency. The absence of a flux tower network restricts the ability to track seasonal changes in C uptake and to understand fine-scale controls of C dynamics.     

A model to simulate yield losses in winter wheat caused by weeds,for use in a weed management decision support system

The ‘within-season’ module of the Weed Manager decision support system (DSS) predicts the effect of twelve UK arable weeds on winter wheat yields and profitability. The model and decision algorithm that underpin the DSS are described and their performance discussed. The model comprises: (i) seedling germination and emergence, (ii) early growth, (iii) phenological development, (iv) herbicide and cultivation effects and (v) crop yield loss. Crop and weed emergence are predicted from the timing and method of cultivation, species biology, and the weather. Wheat and weeds compete for resources, and yield losses are predicted from their relative leaf area at canopy closure. Herbicides and cultural control methods reduce weed green area index, improving crop yield. A decision algorithm identifies economically successful weed management strategies based on model output. The output of the Weed Manager model and decision algorithm was extensively validated by experts, who confirmed the predicted responses to herbicide application were sufficiently accurate for practical use. Limited independent data were also used in the validation. The development of the module required integrating novel and existing approaches for simulating weed seedling establishment, plant development and decision algorithm design. Combining these within Weed Manager created a framework suitable for commercial use.     

Pedologic and geomorphic impacts of a tornado blowdown event in a mixed pine-hardwood forest

Biomechanical effects of trees on soils and surface processes may be extensive in forest environments. Two blowdown sites caused by a November 2005 tornado in the Ouachita National Forest, Arkansas allowed a case study examination of bioturbation associated with a specific forest blowdown event, as well as detailed examination of relationships between tree root systems, soils, and underlying bedrock. The sites occur within mixed shortleaf pine and hardwood forests. More than 95% of trees in the severe blowdown areas were either uprooted or suffered trunk break, with uprooting more common than breakage. Within the most heavily damaged areas all uprooted trees were pines, while all trees left standing were hardwoods. Root wads of uprooted trees had a mean surface area of about 3 m² and volume of about 2 m³, though individual sizes were quite variable. Nearly 4% of the ground surface area was affected by uprootings, with a soil volume equivalent to a disturbance of the entire surface area to a depth of 2.4 cm. Tree size (as measured by diameter at breast height) was significantly related to the area and volume of root wads (R² = 0.55, 0.71, respectively), with volume of uprooted soil varying as diameter to the ~ 3 power, suggesting that the timing of blowdown events relative to tree age or growth stage significantly influences the area of disturbance and the mass and volume of material involved. In 93% of cases the roots of the uprooted trees contacted or penetrated the underlying bedrock, and in all those cases bedrock was quarried by uprooting. Only 11% of the tree throws showed evidence of general lateral root turning at the soil–bedrock interface; in most cases roots penetrated bedrock along joints. The propensity for tree roots to penetrate bedrock joints, facilitate weathering, and excavate bedrock during uprooting supports the idea that tree roots play a predominant role in locally deepening soils.     

Exploitation shifted trophic ecology and habitat preferences of Mediterranean and Black Sea bluefin tuna over centuries

During recent decades, the health of ocean ecosystems and fish populations has been threatened by overexploitation, pollution and anthropogenic-driven climate change. Due to a lack of long-term ecological data, we have a poor grasp of the true impact on the diet and habitat use of fishes. This information is vital if we are to recover depleted fish populations and predict their future dynamics. Here, we trace the long-term diet and habitat use of Atlantic bluefin tuna (BFT), Thunnus thynnus, a species that has had one of the longest and most intense exploitation histories, owing to its tremendous cultural and economic importance. Using carbon, nitrogen and sulphur stable isotope analyses of modern and ancient BFT including 98 archaeological and archival bones from 11 Mediterranean locations ca. 1st century to 1941 CE, we infer a shift to increased pelagic foraging around the 16th century in Mediterranean BFT. This likely reflects the early anthropogenic exploitation of inshore coastal ecosystems, as attested by historical literature sources. Further, we reveal that BFT which migrated to the Black Sea–and that disappeared during a period of intense exploitation and ecosystem changes in the 1980s–represented a unique component, isotopically distinct from BFT of NE Atlantic and Mediterranean locations. These data suggest that anthropogenic activities had the ability to alter the diet and habitat use of fishes in conditions prior to those of recent decades. Consequently, long-term data provide novel perspectives on when marine ecosystem modification began and the responses of marine populations, with which to guide conservation policy.     

Tyrannosaur life tables: an example of nonavian dinosaur population biology

The size and age structures for four assemblages of North American tyrannosaurs-Albertosaurus, Tyrannosaurus, Gorgosaurus, and Daspletosaurus-reveal a pronounced, bootstrap-supported pattern of age-specific mortality characterized by relatively high juvenile survivorship and increased mortality at midlife and near the maximum life span. Such patterns are common today in wild populations of long-lived birds and mammals. Factors such as predation and entrance into the breeding population may have influenced tyrannosaur survivorship. This survivorship pattern can explain the rarity of juvenile specimens in museum collections.     

Variation in Surrogate Breeding Habitat Quality Between Continuously Grazed Rangelands and Late-Cut Hayfields for a Threatened Grassland Birds

Rangelands and hayfields provide a large portion of remaining surrogate habitat for many species of declining grassland birds in North America. We compared late-cut hayfields and continuously grazed pastures at low to moderate cattle densities for providing suitable breeding habitat in eastern Canada for the nationally threatened Bobolink (Dolichonyx oryzivorus). To examine the quality of both habitats, we conducted point counts and monitored 87 nests during the 2015 and 2016 breeding seasons. Bobolink abundance and daily survival rate (DSR) of nests were modeled sequentially by habitat and sex as a function of vegetation structure, prey availability, and agricultural management. Year and habitat were the strongest predictors of abundance. When analyzed separately for pastures and hayfields, vegetation height was most important for female abundance in pastures while pasture size was most important for males. Nests in hayfields had significantly higher daily survival (DSR = 0.98 ± 0.01) than nests in pastures (DSR = 0.94 ± 0.01). Nesting success was highest in hayfields with taller vegetation, while in pastures, no microhabitat variable showed a clear relationship with DSR. Within pastures, cattle stocking densities of ≤ 1 animal units (AU) · ha^? 1 were not related to DSR. This study provides evidence that late-cut hay is of highest quality, but that small-scale beef farms with low to moderate stocking densities are suitable targets for conservation efforts of Bobolinks in eastern North America.     

Differentiation of viable, apoptotic and necrotic cells in bronchoalveolar lavage fluid of normal horses and horses with recurrent airway obstruction

Proinflammatoric cytokines are released extracellularly during necrosis. These lead to inflammation and destruction of surrounding tissues. The aim of this study was to compare the number of viable, apoptotic and necrotic cells in the bronchoalveolar lavage fluid (BALF) of normal horses and horses with recurrent airway obstruction (RAO) and to determine if fluorescence microscopy is a reliable method for this examination. A group of six normal horses and a group of ten horses with RAO were examined. Samples were assessed using annexin-V and propidium iodide immunofluorescence assay and examined by fluorescence microscopy (16 horses) and flow cytometry (nine of 16 horses). We found no significant differences in percentages of apoptotic and viable cells between both groups. The number of necrotic cells was significantly increased in horses with RAO counted by fluorescence microscopy. Cells with high granularity and macrophages had a significantly higher percentage of necrotic cells than lymphocytes. There was a good agreement between both methods. No significant differences were detected. The correlation between both methods is significant. Higher amounts of necrotic cells in the bronchial lumina of horses with RAO could be a reason for tissue damage and continuous lung tissue inflammation. Fluorescence microscopy was applicable for examination of BALF. Therapy should be aimed at the reduction of necrotic cells in the bronchial lumina. Further studies are required to find ways to reduce inflammatory cell infiltration and necrosis in bronchial lumina.