Current status of rodents on islands in the Gulf of California

On islands in the Gulf of California, many species and subspecies of rodents are relict species, restricted to the islands, and now considered extinct or verging on extinction. From 1991 to 1999, each island was surveyed and an average of 15 work-nights were spent on each island, for a total of 15,000 trap-nights. A Fourier series was used to estimate population density. Five native taxa are now considered extinct (Chaetodipus baileyi fornicatus, Peromyscus guardia mejiae, P. g. harbinsoni, P. pembertoni, and Neotoma bunkeri). Two species are at risk of extinction (Dipodomys insularis and Neotoma albigula varia). The most probable cause for extinction is the introduction of nonnative species, specifically cats. We believe that the most vulnerable rodent populations of the islands in the Gulf of California to non-native species are Neotoma lepida latirostra on Danzante island and Neotoma lepida abbreviata on San Francisco island, both in the state of Baja California Sur.     

Genetic variation of the durum wheat landrace Haurani from different agro-ecological regions

The durum wheat landrace Haurani (Triticum durum Desf.) is grown under contrasting climatic regions of Syria from Deir Ezzor, in the North-East (230 m altitude, 150 mm mean annual rainfall), to Qunaytra, in the South-West (1060 m altitude, 825 mm mean annual rainfall). In order to assess the genetic variation between and within Haurani populations, samples from eight provinces of Syria (Daraa, Damascus, Qunaytra, Deir Ezzor, Hassakeh, Aleppo, Homs and Hama) were analysed by RFLPs and seed storage proteins of glutenin subunits as markers. The analyses showed the presence of genetic polymorphisms in all populations with the highest values in those from Homs and Hassakeh. Moreover, the results point out differences in genetic distances between populations; some populations were further apart, such as Damascus and Aleppo, whereas others were closer to each other, for instance Homs and Hama. Cluster analysis identified two distinct groups of populations, characterized by geographical proximity, with similar rainfall and altitude. It is suggested that the similarity of landraces at locations close to each other might be the result of more frequent seed exchanges between farmers or of gene flow due to 5% estimated outcross rate of Haurani.     

Intensity of browsing on trees and shrubs under experimental variation of cattle stocking densities in southern Bolivia

Mountain forests are traditionally used for cattle grazing during the dry season in southern Bolivia. To evaluate browsing intensity and damage to young trees and shrubs, a forest grazing area was monitored for about 3 months in both 2006 and 2007. Three similar paddocks of about 3 ha each, consisting of grassland and forest in a ratio of about 1:3 were stocked with 0.9, 1.6 and 2.6 tropical livestock units per ha (equivalents of 250 kg of body weight), reflecting low, medium and high stocking densities. Six 5 m × 5 m plots were mapped out within each paddock in 2006. Three additional plots per paddock were added in 2007. Within plots, the individuals of 18 woody species were coded and evaluated weekly for intensity of browsing. Intensity was quantified using five-scale categories reflecting the proportions of plant tissue removed (0 = no browsing, 1 = 1–25%, 2 = 26–50%, 3 = 51–75% and 4 = 76–100%). Across all plant species, the average category of browsing intensity, as determined in the post-grazing evaluation, was affected (P < 0.001) by stocking density. Browsing intensity increased in an approximately linear manner from 1.58 to 2.18 and 2.77 with low, medium and high stocking density, respectively. There was no significant difference between years. Most woody species followed the same general response pattern to stocking density, although some species were only noticeably browsed at high stocking density while a few others were intensively browsed at all stocking densities. The onset of browsing on woody species was observed only after some weeks had passed, indicating that herbaceous plants were preferred as a forage resource. The proportion of fatally damaged individuals, as assessed about 8 months after grazing in 2006, were 10.6%, 8.6% and 11.4% for low, medium and high stocking density, respectively. The percentage of completely browsed individuals increased with stocking density, but 80% of those plant individuals recovered following a resting period of 8 months. However, although most woody species recovered from browsing and fatal damage was infrequent, long-term changes in woody plant species composition and structure caused by grazing cannot be excluded. High stocking density in particular may reduce the vigour of heavily browsed species.     

Species distribution models applied to plant species selection in forest restoration: are model predictions comparable to expert opinion?

An expert on local flora usually is the best option for plant species selection in most ecological restoration projects; although species selection often needs to be dealt with swiftly as well as on a limited budget, and obtaining the opinion of a local expert may not always be an economically viable alternative. In such cases, species distribution models (SDM) may offer a faster and more cost effective alternative. We asked six experts to rank native tree species according to their suitability at 24 forest sites. The predictive performance of the suitability rankings was evaluated by assessing their ability to discriminate present from absent species in the observed tree assemblages at each evaluation site. We used the area under the receiver operating characteristic curve to calculate the probability that the estimated suitability for a species present at a particular evaluation site is greater than the estimate for an absent species (both picked at random). Suitability rankings were also obtained from the predictions of SDM and the same procedure was used to estimate the predictive performance of the set of models at each site. The experts offered concordant suitability rankings at almost every evaluation site. There were no significant differences in the predictive performance of the SDM and four of the experts, although the SDM performed slightly better than the other two experts. Our results point to the suitability of the proposed species distribution modeling approach to obtain fast and cost effective recommendations for species selection in forest restoration projects.     

Subtilase cytotoxin encoding genes are present in human, sheep and deer intimin-negative, Shiga toxin-producing Escherichia coli O128:H2

Shiga toxin-producing Escherichia coli (STEC) O128:H2 is recognised worldwide to be an important non-O157 STEC associated with human illness and in particular with causing haemolytic uraemic syndrome. This serotype is commonly isolated from sheep and is being increasingly isolated from deer. We determined the virulence profile and genetic relationships of one human, six sheep and five deer intimin-negative STEC O128:H2 strains isolated in Spain over a 7-year period. Our goals were to establish the presence of other virulence-associated factors, such as SubAB, in intimin-negative STEC O128:H2 strains involved in human disease and in that case, to determine if sheep and/or deer represent a reservoir of SubAB-positive STEC O128:H2. All the strains lacked the eae gene and carried subtilase cytotoxin (SubAB) encoding genes (subAB) and tia genes, but not saa gene, suggesting the presence of the recently identified new variant of SubAB, encoded on a putative pathogenicity island together with tia. We report for the first time the presence of subtilase cytotoxin encoding genes in intimin-negative STEC O128:H2 strains pathogenic for humans and how this finding might explain their clinical relevance despite neither carrying eae nor stx subtypes associated with severe clinical outcomes, but only stx1c and stx2b. Multilocus sequence typing analysis revealed that STEC O128:H2 strains from sheep and deer belong to the clonal lineage of STEC O128:H2 strains involved in diarrhoeal and haemorrhagic diseases in humans. Our results indicate that sheep and deer represent a reservoir of SubAB-positive STEC O128:H2 strains and thus a potential source of human infection.     

Proteome-determined type-specific proteins of Mycobacterium avium subspecies paratuberculosis

Mycobacterium avium subspecies paratuberculosis (M. a. paratuberculosis) is a pathogen of ruminants, causing paratuberculosis (characterized by severe emaciation). The disease is endemic in many countries including the UK and places a severe economic burden on the global livestock industry. Two types of M. a. paratuberculosis can be classified by pulsed-field electrophoresis (I/III and II), which are phenotypically distinct and appear to have different host preferences. Proteomes of Type I and Type II M. a. paratuberculosis were analyzed by 2-D gel electrophoresis to determine if any significant differences existed between the subtypes. Seven different strains of Type I and 18 strains of Type II were analyzed and compared to detect type-specific differences. These 'type-specific' differences existed regardless of growth phase and were also exhibited in cells isolated directly from pathogenic lesions. Twenty-three spots predominated on the Type I profile, from which 17 proteins were identified. Twenty-one spots predominated on the Type II profile, from which 16 proteins were identified. None of the proteins identified as differentially represented on the profiles of Type I or Type II corresponded to open reading frames of the defining genomic regions as previously described for the Type I (sheep) and Type II (cattle). Sequence polymorphisms existing in Type I and II strains were identified in some open reading frames or regulatory regions of genes that correspond to proteins expressed in a type-specific fashion. The consequence of these is discussed in relation to protein expression and their impact on the type phenotype is discussed.     

A stochastic approach for analysis of the influence of white spot disease, zootechnical parameters, water quality, and management factors on the variability of production of shrimp Litopenaeus vannamei cultivated under intensive commercial conditions

We investigated the variability of shrimp Litopenaeus vannamei production by incorporating stochastic elements into deterministic stock models and determined the contribution that white spot disease, zootechnical parameters, water quality, and alternative management strategies have on variability. The model was calibrated for intensive shrimp cultivation in the State of Nayarit, Mexico. Mean annual production increased as a consequence of improved management from 8000 kg ha⁻¹ to 22,000 kg ha⁻¹ when cultivation was not affected by the disease and from 3200 kg ha⁻¹ to 10,400 kg ha⁻¹ when the disease affected production. When simultaneously considering both cases, mean annual production increased from 6300 kg ha⁻¹ to 16,800 kg ha⁻¹. White spot disease was a major factor determining variability of production. Shrimp production was particularly sensitive to levels of dissolved oxygen when management was inadequate, while final weight and mortality rate of shrimp were more sensitive when management improved. Water temperature and salinity had intermediate importance, and mortality caused by the disease and the time when mortality occurred had intermediate or low relevance. Improving management increased shrimp production and diminished variability. The duration of cultivation and stocking density were the most important management variables controlling variability of production when cultivation was affected by the white spot disease. When the disease was not present, pond size and duration of cultivation were the main factors affecting production. Starting time of aeration had relatively lower importance in determining variability, while the stochastic values of dissolved oxygen, in contrast, became most important. These results call for studies on improving aeration management to reduce variability of dissolved oxygen in ponds.     

Physiological responses of pink abalone Haliotis corrugata (Gray, 1828) exposed to different combinations of temperature and salinity

Physiological responses of pink abalone Haliotis corrugata were determined under different temperature and salinity conditions. Oxygen consumption rate was not affected by temperature and salinity. Ammonium excretion of pink abalone was inversely related to salinity. The O:N ratio indicated that abalone maintained in lower salinities had an interval of 4.9–7.7, which is indicative of a protein‐dominated metabolism, whereas the O:N in 35‰ was 28.8–35.5 for both temperatures, suggesting that carbohydrates were used as energy substrate. Haemolymph osmolality of abalone exposed to 20 and 24 °C was slightly hyperiso‐osmoconformic in salinity ranges of 20–35‰. The results of this study suggested that for optimized culture, pink abalone should be cultivated at 24 °C at a salinity of 35‰.