Model studies on the photosensitized isomerization of bixin

The photosensitized isomerization reaction of the natural cis carotenoid bixin (methyl hydrogen 9'-cis-6, 6'-diapocarotene-6, 6'-dioate) with rose bengal or methylene blue as the sensitizer in acetonitrile/methanol (1:1) solution was studied using UV-vis spectroscopy, high-performance liquid chromatography (HPLC), and time-resolved spectroscopic techniques, such as laser-flash photolysis and singlet oxygen phosphorescence detection. In both N(2)- and air-saturated solutions, the main product formed was all-trans-bixin. The observed isomerization rate constants, k(obs), decreased in the presence of air or with increase in the bixin concentration, suggesting the participation of the excited triplet state of bixin, (3)Bix, as precursor of the cis--> trans process. On the other hand, bixin solutions in the absence of sensitizer and/or light did not degrade, indicating that the ground state of bixin is stable to thermal isomerization at room temperature. Time-resolved spectroscopic experiments confirmed the formation of the excited triplet state of bixin and its deactivation by ground state bixin and molecular oxygen quenching processes. The primary isomerization products only degraded in the presence of air and under prolonged illumination conditions, probably due to the formation of oxidation products by reaction with singlet molecular oxygen. An energy-transfer mechanism was used to explain the observed results for the bixin transformations, and the consequences for food color are discussed.     

Classification of cereal flours by chemometric analysis of MIR spectra

Different kinds of cereal flours submitted to various technological treatments were classified on the basis of their mid-infrared spectra by pattern recognition techniques. Classification in the wavelet domain was achieved by using the wavelet packet transform for efficient pattern recognition (WPTER) algorithm, which allowed singling out the most discriminant spectral regions. Principal component analysis (PCA) on the selected features showed an effective clustering of the analyzed flours. Satisfactory classification models were obtained both on training and test samples. Furthermore, mixtures of varying composition of the studied flours were distributed in the PCA space according to their composition.     

The elusiveness of coffee aroma: new insights from a non-empirical approach

Aroma is central to a pleasurable eating/drinking experience but is one of the most labile components of food. Coffee is an outstanding example. Attempts to avoid or control aroma degradation are often frustrated by ignorance of the microscopic mechanisms that are responsible for it. One of the processes most frequently invoked is radical formation, yet the identity of the radicals and their involvement in aroma degradation are poorly understood at the molecular level. Here a step forward in the fundamental understanding of this complex problem is taken by identifying the most relevant radicals and their products using first-principles calculations. Over 100 radicals originating from key aroma compounds found in coffee and other foods have been studied and classified according to an unambiguous criterion: their thermodynamic stability relative to common radical sources. This classification scheme predicts that most aroma molecules are resistant to both peroxidation and attack from phenolic antioxidants but are unstable with respect to radicals such as .OH. Dimers--generated from radical reactions--were also considered, and the most volatile species, which may further contribute to coffee aroma degradation, were focused on. Those--which are very few indeed--that have this potential have been identified.     

Interactions of prion proteins with soil

Prions, are proteinaceous particles recognized as the agents of a class of neurodegenerative disorders, called transmissible spongiform encephalopathies (TSE), or prion diseases. Epidemiological data suggest that TSE-contaminated environments may serve as source of infectivity, but there is no information about adsorption of prions onto soil. We carried out experiments by mixing, healthy, or scrapie-infected hamster brains homogenates with three types of soil suspended in different buffers: (i) two saline buffers, i.e., phosphate buffer solution (PBS) and CaCl₂ solution; (ii) a mix of nondenaturing detergents, i.e., Triton X-100 and sodium deoxycholate (DOC) solution; (iii) a non-ionic detergent, i.e., lauryl maltoside; (iv) two anionic detergents, i.e., Sarkosyl or sodium dodecyl sulphate (SDS); and (v) a chaotropic agent, i.e., urea. The unbound prion proteins were detected in the supernatants (after centrifugation of soil suspension) by Western blotting. Results clearly demonstrate that both the no infectious (PrP^C) and infectious (PrP^Sc) forms are adsorbed by all soils. Only 1% sodium dodecylsulphate (SDS) partially impeded the association of PrP^C, but not that of PrP^Sc with the sandy loam soil. Agents with different interacting properties towards hydrophilic and/or hydrophobic domains failed to extract PrP^Sc from sediments of soil-brain homogenate mixtures. The strong interaction of PrP^Sc with soil favors the accumulation of prions in soils, especially if amended with prion-containing organic fertilizers and/or whenever TSE-affected animal carcasses, placenta, and excreta in general are buried or laid at the soil surface.     

Isolation and biochemical characterization of a basic myrosinase from ripe Crambe abyssinica seeds,highly specific for epi-progoitrin

On the basis of previous studies on the mechanism-based inhibition, activation, and active site structure of myrosinase(s) isolated from Sinapis alba and other cruciferous seeds, crambe myrosinase shows uncommon properties and behavior. For this reason homogeneous crambe myrosinase was isolated and investigated to establish the most important physicochemical features, including kinetic properties determined with the epimers progoitrin (R) and epi-progoitrin (S) as substrates, with and without ascorbate as an activator. The results of this study demonstrate that crambe myrosinase is highly specific for epi-progoitrin due to a better stabilization of the enzyme-substrate complex. This stabilization is caused by additional hydrogen bonding that only epi-progoitrin can set up between its hydroxyl group and a suitable residue in the hydrophobic pocket where the "docking" of the glucosinolates side chain takes place.     

The mtDNA legacy of the Levantine early Upper Palaeolithic in Africa

Sequencing of 81 entire human mitochondrial DNAs (mtDNAs) belonging to haplogroups M1 and U6 reveals that these predominantly North African clades arose in southwestern Asia and moved together to Africa about 40,000 to 45,000 years ago. Their arrival temporally overlaps with the event(s) that led to the peopling of Europe by modern humans and was most likely the result of the same change in climate conditions that allowed humans to enter the Levant, opening the way to the colonization of both Europe and North Africa. Thus, the early Upper Palaeolithic population(s) carrying M1 and U6 did not return to Africa along the southern coastal route of the "out of Africa" exit, but from the Mediterranean area; and the North African Dabban and European Aurignacian industries derived from a common Levantine source.     

Genetic variant BDNF (Val66Met) polymorphism alters anxiety-related behavior

A common single-nucleotide polymorphism in the brain-derived neurotrophic factor (BDNF) gene, a methionine (Met) substitution for valine (Val) at codon 66 (Val66Met), is associated with alterations in brain anatomy and memory, but its relevance to clinical disorders is unclear. We generated a variant BDNF mouse (BDNF(Met/Met)) that reproduces the phenotypic hallmarks in humans with the variant allele. BDNF(Met) was expressed in brain at normal levels, but its secretion from neurons was defective. When placed in stressful settings, BDNF(Met/Met) mice exhibited increased anxiety-related behaviors that were not normalized by the antidepressant, fluoxetine. A variant BDNF may thus play a key role in genetic predispositions to anxiety and depressive disorders.     

Ozone fumigation of Quercus ilex L. slows down leaf litter decomposition with no detectable change in leaf composition

Context

The evaluation of changes in litter decomposition rate due to increasing trend in tropospheric ozone is an emerging field of investigation, providing relevant information on long-term forest ecosystem sustainability.

Aims

This research aims to clarify the effects of ozone exposure on Quercus ilex leaf chemical composition and decomposition slow down.

Methods

Young plants were fumigated in growth chambers at a cumulative dose of 17.15 ppm h. To assess the fumigation effectiveness, stomatal conductance and net photosynthesis were monitored. Leaves were analysed for C, N, S, Ca, Mg, K, Fe, Zn, Mn, total soluble sugars, starch, acid-detergent fibre (ADF), lignin and cellulose prior to the incubation in litter bags in mesocosms, and during decomposition along 395 days.

Results

Ozone-exposed leaves showed a significant reduction in net photosynthesis and stomatal conductance but did not differ from control leaves in all the chemical parameters analysed. Nevertheless, leaf decomposition rate was lower in treated leaves. The main differences between the models describing the mass loss in exposed and control leaves were played by ADF for exposed leaves and by lignin for control leaves, as well as by N, that showed a greater contribution in the model for the exposed leaves.

Conclusion

Ozone fumigation of Q. ilex results in leaf litter decomposition slowing down, mainly due to ADF joint dynamics with the other variables describing mass decay, even if no detectable changes in initial leaf composition occur.     

Quantifying plant species diversity in a Natura 2000 network: Old ideas and new proposals

Assessing the effects of the spatial components on species diversity in a network of protected areas represents an important step for assessing its conservation “capacity”. A clear evaluation on how α-, β-, and γ-diversity are partitioned among and within spatial scales can help to drive manager decisions and provide method for monitoring species diversity. Moving from these concepts, a probabilistic sample of plant species composition was here applied for quantifying plant species diversity within the Sites of Community Importance (SCIs) of the Natura 2000 network in the Siena Province. All analyses were performed separately for all species and those species defined as “focal” (included in regional, national or continental “red” lists). The results indicated that species richness of the SCIs differed from one location to another one independently from the sampling efforts. Diversity partitioning indicated that most of the flora diversity within the network was given by larger-scale β-diversity, i.e. the differences in species composition among SCIs. β-diversity was then decomposed in two components: β_Area (due to the differences in area among SCIs) and β_Replacement (due to the compositional differences across SCIs). β_Area was particularly important for all species, while β_Replacement was the most important factor for focal species. The consequent implications for monitoring and nature conservation strategies are discussed.