Comparison of two short DNA barcoding loci (COI and COII) and two longer ribosomal DNA genes (SSU & LSU rRNA) for specimen identification among quarantine root-knot nematodes (Meloidogyne spp.) and their close relatives

Root-knot nematodes (Meloidogyne spp.) are important pests of numerous crops worldwide. Some members of this genus have a quarantine status, and accurate species identification is required to prevent further spreading. DNA barcoding is a method for organism identification in non-complex DNA backgrounds based on informative motifs in short DNA stretches (≈600 bp). As part of the EU 7th Framework project QBOL, 15 Meloidogyne species were chosen to compare the resolutions offered by two typical DNA barcoding loci, COI and COII, with the distinguishing signals produced by two ribosomal DNA genes (small and large subunit rDNA; SSU?≈?1,700 and LSU?≈?3,400 bp). None of the four markers distinguished between the tropical species Meloidogyne incognita, M. javanica and M. arenaria. Taking P ID (Liberal) values ≥0.93 as a measure for species delimitation, the four mtDNA and rDNA markers performed well for the tropical Meloidogyne species complex, M. enterolobii, M. hapla, and M. maritima. Within cluster III A (Holterman et al. Phytopathology, 99, 227–235, 2009), SSU rDNA did not offer resolution at species level. Both mtDNA loci COI and COII did, whereas for LSU rDNA a longer fragment (≥700 bp) is required. The high level of mitochondrial heteroplasmy recently reported for M. chitwoodi (Humphreys-Pereira and Elling Nematology, 15, 315–327, 2013) was not found in the populations under investigation, suggesting this could be a regional phenomenon. For identification of RKNs, we suggest the combined use of SSU rDNA with one of three other markers presented here.     

Expression and mode of inheritance of resistance in coffee to leaf miner Perileucoptera coffeella

The coffee leaf miner (Perileucoptera coffeella, Guérin-Méneville), is the most serious pest on coffee in Brazil. Coffee varieties with resistance to this pest have been developed in Brazil using genes from the Coffea racemosa Lour. species. Resistance to P. coffeella was studied in C. racemosa and in advanced breeding populations derived from BC3 and BC4 generations through artificial infestation of coffee leaves (laboratory) and natural infestation (greenhouse). Based on an analysis of variance carried out with notes attributed to lesions, two weeks after egg hatching, C. racemosa plants and BC4 progenies were classified in 3 groups according to their degree of resistance to the insect. The age of the leaves seemed to play a role in the expression of resistance of C. racemosa and of BC4 progenies to P. coffeella. The data seemed to show that resistance to P. coffeella derived from C. racemosa can be best explained by two complementary dominant genes. Segregations for resistance assessed in families obtained by selfing or open pollination or by back-crossing with a susceptible variety were similar to the expected segregation of 9 resistant: 7 susceptible or 1 resistant: 3 susceptible, respectively. The symbols Lm1, lm1, Lm2 and lm2 are proposed for the alleles. Consequences for breeding coffee varieties with resistance are discussed.     

Long-term organic farming fosters below and aboveground biota: Implications for soil quality, biological control and productivity

Organic farming may contribute substantially to future agricultural production worldwide by improving soil quality and pest control, thereby reducing environmental impacts of conventional farming. We investigated in a comprehensive way soil chemical, as well as below and aboveground biological parameters of two organic and two conventional wheat farming systems that primarily differed in fertilization and weed management strategies. Contrast analyses identified management related differences between “herbicide-free” bioorganic (BIOORG) and biodynamic (BIODYN) systems and conventional systems with (CONFYM) or without manure (CONMIN) and herbicide application within a long-term agricultural experiment (DOK trial, Switzerland). Soil carbon content was significantly higher in systems receiving farmyard manure and concomitantly microbial biomass (fungi and bacteria) was increased. Microbial activity parameters, such as microbial basal respiration and nitrogen mineralization, showed an opposite pattern, suggesting that soil carbon in the conventional system (CONFYM) was more easily accessible to microorganisms than in organic systems. Bacterivorous nematodes and earthworms were most abundant in systems that received farmyard manure, which is in line with the responses of their potential food sources (microbes and organic matter). Mineral fertilizer application detrimentally affected enchytraeids and Diptera larvae, whereas aphids benefited. Spider abundance was favoured by organic management, most likely a response to increased prey availability from the belowground subsystem or increased weed coverage. In contrast to most soil-based, bottom-up controlled interactions, the twofold higher abundance of this generalist predator group in organic systems likely contributed to the significantly lower abundance of aboveground herbivore pests (aphids) in these systems. Long-term organic farming and the application of farmyard manure promoted soil quality, microbial biomass and fostered natural enemies and ecosystem engineers, suggesting enhanced nutrient cycling and pest control. Mineral fertilizers and herbicide application, in contrast, affected the potential for top-down control of aboveground pests negatively and reduced the organic carbon levels. Our study indicates that the use of synthetic fertilizers and herbicide application changes interactions within and between below and aboveground components, ultimately promoting negative environmental impacts of agriculture by reducing internal biological cycles and pest control. On the contrary, organic farming fosters microbial and faunal decomposers and this propagates into the aboveground system via generalist predators thereby increasing conservation biological control. However, grain and straw yields were 23% higher in systems receiving mineral fertilizers and herbicides reflecting the trade-off between productivity and environmental responsibility.     

Growth Effects of Governmental Policies: A Comparative Analysis in a Multi‐Country Context

The potential interactions among governmental policies, investments andeconomic growth are complex and manifold. This paper will perform a systematic comparative analysis of the various economic insights that are currently available on these complex relationships, both theoretically (by a selective literature review) and empirically (by reviewing the empirically obtained insights). Despite the wide variety of potential theoretical relationshipsbetween government expenditures, taxation and growth, most empirical analyses are restricted to simple linear regressions of growth on some measure of government expenditures. We will indicate directions for future empirical research that may enrich our knowledge about the complex relationship between fiscal policies and economic growth, not only nationally but also regionally.     

Assessment of a low virulence Australian isolate of Anaplasma marginale for pathogenicity, immunogenicity and transmissibility by Boophilus microplus

A 14-year-old cow (Dawn) born and kept in a Boophilus microplus-free region gave birth to a calf, which showed the presence of an Anaplasma marginale infection after splenectomy. The calf's grand dam was from a B. microplus infected area and we assume the infection originated via the transplacental route over two generations. An isolate, prepared from the calf, had similar or lower pathogenicity as Anaplasma centrale, and previously exposed steers were resistant to challenge by four A. marginale field isolates. Two attempts to transmit the isolate using B. microplus were unsuccessful. Our results indicate that Dawn A. marginale may be a useful vaccine in Australia and warrants larger scale validation of its safety and potency locally as well as of the protection it affords against African and New World isolates.     

Regeneration patterns in boreal Scots pine glades linked to cold-induced photoinhibition

Regeneration patterns of Pinus sylvestris L. juveniles in central Siberian glades were studied in relation to cold-induced photoinhibition. Spatial distribution of seedlings in different height classes revealed higher seedling densities beneath the canopy than beyond the canopy, and significantly higher densities of seedlings < 50 cm tall on the north side of the trees. These patterns coincided with differences in light conditions. Compared with plants on the north side of canopy trees (north-exposed), photosynthetic photon flux (PPF) received by plants on the south side of canopy trees (south-exposed) was always higher, making south-exposed plants more susceptible to photoinhibition, especially on cool mornings. Chlorophyll fluorescence data revealed lower photochemical efficiency and increased non-photochemical quenching of small (20-50 cm in height), south-exposed seedlings from spring to early autumn, indicating increased excitation pressure on photosynthesis. Maximum rate of oxygen evolution was less in south-exposed plants than in north-exposed plants. Increased pools of xanthophyll cycle pigments and formation of the photoprotective zeaxanthin provided further evidence for the higher susceptibility to photoinhibition of south-exposed seedlings. A linear mixed model analysis explained many of the physiological differences observed in seedlings according to height class and aspect with early morning temperature and PPF as predictors. The link between photoinhibition and differential distribution of seedlings by height class suggests that photoinhibition, together with other environmental stresses, decreases the survival of small, south-exposed P. sylvestris seedlings, thereby significantly affecting the regeneration pattern of central Siberian pine glades.     

Effects of Alkalinity and External Sulphate and Phosphorus Load on Water Chemistry in Enclosures in an Eutrophic Shallow Lake

As a result of changes in hydrology, the former mesotrophic, shallow lake Naardermeer, has been eutrophicated during the last decades. To compensate for shortage of water, eutrophicated water with different chemical characteristics has been supplied. In order to determine the effects of alkalinity, acidity and external sulphate and phosphorus load on eutrophication processes, developments in water chemistry have been studied in enclosures. A decrease of the phosphorus load of the lake did not improve water quality on the short term. This observation was confirmed by this enclosure experiment. Reduction of alkalinity did improve water quality, particularly by reductions of turbidity and chlorophyll-a content. The significant increase in sulphate load in the water layer led to deterioriation of the water quality and an increased biomass of sessile algae by internal eutrophication, probably as a result of increased sulphate reduction in the sediment. Therefore, it seems that lowering of sulphate concentrations in the inlet water after the removal of phosphorus is necessary to improve the water chemistry. The best option, however, is to restore the former hydrological conditions after which the system will be fed only by seepage of groundwater poor in nutrients and sulphate.     

Modeling desorption kinetics of a persistent organic pollutant from field aged sediment using a bi-disperse particle size distribution

Purpose  

With the predicted climate change, it is expected that the chances of river flooding increase. During flood events, sediments will resuspend and when sediments are polluted, contaminants can be transferred to the surrounding water. In this paper we discuss a numerical intraparticle diffusion model that simulates desorption of dieldrin from a suspension of contaminated porous sediment particles with a well-characterized particle size distribution. The objective of this study was to understand the desorption rate (flux) of dieldrin from a suspension of field-aged sediment at different hydraulic retention times (HRT) of the aqueous phase and to elaborate the effect of particle-size distribution on mass transfer.     

Molecular sorting by electrical steering of microtubules in kinesin-coated channels

Integration of biomolecular motors in nanoengineered structures raises the intriguing possibility of manipulating materials on nanometer scales. We have managed to integrate kinesin motor proteins in closed submicron channels and to realize active electrical control of the direction of individual kinesin-propelled microtubule filaments at Y junctions. Using this technique, we demonstrate molecular sorting of differently labeled microtubules. We attribute the steering of microtubules to electric field-induced bending of the leading tip. From measurements of the orientation-dependent electrophoretic motion of individual, freely suspended microtubules, we estimate the net applied force on the tip to be in the picoNewton range and we infer an effective charge of 12 e- per tubulin dimer under physiological conditions.