Variations in leaf mass per area according to N nutrition, plant age, and leaf position reflect ontogenetic plasticity in winter oilseed rape (Brassica napus L.)

Leaf mass per area (LMA) is a parameter the variability of which contributes to architectural plasticity. However its variations according to environment remain not completely understood. We hypothesise that LMA variations of winter oilseed rape (WOSR) follow an ontogenetic trajectory that can be modified by the environment. This was assessed at plant and leaf levels comparing four genotypes field-grown under different environmental conditions characterised by year and nitrogen nutrition. Leaves of the main stem of plants sampled between emergence and harvest were surfaced, oven-dried and weighed to calculate LMA of each individual leaf. At the plant level, LMA presented a common ontogenetic trajectory, which increases from seedling emergence to bolting and from then on decreases. Variations in LMA were related to the variations in plant demand, LMA decreased when demand increased. The trajectory was modified by low N nutrition that increased LMA but differently according to year and genotype, reflecting the plant plasticity. At the leaf level, variations for each individual leaf were related to the variations at the plant level. Plant plasticity and genotypic variability of the responses of LMA to N deficiency seemed to be related to differences in biomass allocation between leaves and stems.     

Cleaner fishes and shrimp diversity and a re‐evaluation of cleaning symbioses

Cleaning symbiosis has been documented extensively in the marine environment over the past 50 years. We estimate global cleaner diversity comprises 208 fish species from 106 genera representing 36 families and 51 shrimp species from 11 genera representing six families. Cleaning symbiosis as originally defined is amended to highlight communication between client and cleaner as the catalyst for cooperation and to separate cleaning symbiosis from incidental cleaning, which is a separate mutualism preceded by no communication. Moreover, we propose the term ‘dedicated’ to replace ‘obligate’ to describe a committed cleaning lifestyle. Marine cleaner fishes have dominated the cleaning symbiosis literature, with comparatively little focus given to shrimp. The engagement of shrimp in cleaning activities has been considered contentious because there is little empirical evidence. Plasticity exists in the use of ‘cleaner shrimp’ in the current literature, with the potential to cause significant confusion. Indeed, this term has been used incorrectly for the shrimp Infraorder Stenopodidea, involving three families, Stenopodidae, Palaemonidae and Hippolytidae, and to represent all members of Lysmata and Stenopus. Caution is expressed in the use of grey literature and anecdotal observations to generate data on cleaning interactions, due to the presence of species complexes. Interest in cleaning organisms as biological controls in aquaculture is increasing due to their value as an alternative to various chemical ectoparasite controls. Reports of the importance of cleaner organisms in maintaining a healthy reef ecosystem has also been increasing and we review the current biological knowledge on cleaner organisms, highlighting areas that are understudied.     

Isolation of alginate lyase‐producing bacteria and screening for their potential characteristics as abalone probionts.

This study is aimed at the isolation and screening of alginate lyase‐producing bacteria from the gastrointestinal tracts of hybrid abalone, Haliotis rubra x H. laevigata, as probiotic candidates. Six bacterial isolates were detected to produce alginate lyase. Of these, the isolate with the highest alginate‐lyase activity was identified as Enterobacter ludwigii strain EN‐119, displaying 99% similarity of 16S rDNA sequence. Further assays indicated that E. ludwigii showed good viability and stability when it was incorporated into manufactured pellets and stored at 4°C for 7 days. The isolate also had high tolerance of high salinity (35 mg/L), low pH in simulated stomach juice (5) and to simulated intestinal juice containing surfactants such as bile salts and gastric enzymes (pepsin and trypsin). Additionally, a short, preliminary study indicated that supplementation of E. ludwigii via manufactured pellets improved the total weight gain and specific growth rate of hybrid abalone. These results suggest that E. ludwigii is a potential probiont for shortening the culture period of hybrid abalone.     

Detection and identification of aquatic mycobacteria in formalin-fixed, paraffin-embedded fish tissues

The isolation of mycobacteria from field samples is problematic, and isolation of the bacterium is sometimes not even attempted. The detection of mycobacteria through traditional histology using formalin‐fixed, paraffin‐embedded (FFPE) tissues is neither sensitive nor specific. However, detection of mycobacterial DNA from FFPE specimens, suspected of being infected with mammalian mycobacteriosis, is a routine clinical procedure. In the present study, a polymerase chain reaction (PCR)‐based method was used to detect and identify mycobacteria in FFPE specimens sampled from fish suspected of being infected with fish mycobacteriosis. A total of 45 fish tissue samples, comprising of 12 tissue samples obtained from experimentally infected fish and the remainder from fish naturally infected with mycobacteria, were analysed using a PCR protocol which amplifies a fragment of the mycobacterial 65 kDa heat‐shock protein (hsp65) gene. PCR‐restriction enzyme analysis and/or sequencing were employed to further analyse the PCR amplicons. The PCR results were compared with those obtained by histology and culture. Mycobacterial DNA was detected in 34 of the 45 samples examined, of which 16 samples (47%) showed granulomatous reactions on histological examination. Using histology as the gold standard, no false‐negative PCR results were obtained. Also, considering the presence or absence of granulomas as a diagnostic criterion, the sensitivity and specificity of PCR in 42 of the FFPE tissues were 16/16 (100%) and 8/26 (～30.8%), respectively. Corresponding microbiological cultures were available for 15 cases, of which 13 were pure Mycobacterium cultures. Of these, 13 were PCR positive (100% sensitivity and 50% specificity). The PCR‐based methods used here proved sensitive, specific and rapid for the detection of mycobacteria in routinely processed paraffin wax‐embedded and formalin‐fixed histological samples, and the results of the study suggest that this method has potential use in retrospective epidemiological studies.     

Age-related trends in red spruce foliar plasticity in relation to declining productivity

Phenotypic plasticity in needle morphology with increasing tree size and age was investigated by comparing four age classes of red spruce (Picea rubens Sarg.) ranging from juvenile (3-12 years old) to mature (over 100 years old). With increase in tree age there were significant increases in leaf mass per unit area (LMA), mesophyll and vascular bundle area as a percentage of total needle cross-sectional area, and stomatal density. Within the vascular bundle, both xylem cross-sectional area and tracheid lumen area increased significantly, whereas air space as a percentage of total cross-sectional area decreased. These morphological changes were associated with a significant decrease in photosynthetic capacity and stomatal conductance, and an increase in (13)C enrichment. Although both photosynthetic capacity and whole-tree conductance decreased significantly between age classes 3 and 12 years, they did not differ between age classes 53 and 127 years, even though needle (13)C enrichment was significantly greater in the 127-year age class. Thus there appear to be compensatory mechanisms that maintain photosynthetic capacity as trees increase in size and vascular complexity, which in red spruce and other species, may affect leaf hydraulic conductance. Although increased LMA may contribute to reduced photosynthetic capacity in red spruce, similar relationships are not seen in other conifers.     

Nitrogen allocation and the fate of absorbed light in 21-year-old Pinus radiata

We investigated effects of nitrogen (N) fertilizer and canopy position on the allocation of N to Rubisco and chlorophyll as well as the distribution of absorbed light among thermal energy dissipation, photochemistry, net CO2 assimilation and alternative electron sinks such as the Mehler reaction and photorespiration. The relative reduction state of the primary quinone receptor of photosystem II (QA) was used as a surrogate for photosystem II (PSII) vulnerability to photoinactivation. Measurements were made on needles from the lower, mid and upper canopy of 21-year-old Pinus radiata D. Don trees grown with (N+) and without (N0) added N fertilizer. Rubisco was 45 to 60% higher in needles of N+ trees than in needles of N0 trees at all canopy positions. Chlorophyll was approximately 80% higher in lower- and mid-canopy needles of N+ trees than of N0 trees, but only approximately 20% higher in upper-canopy needles. Physiological differences between N+ and N0 trees were found only in the lower- and mid- canopy positions. Needles of N+ trees dissipated up to 30% less light energy as heat than needles of N0 trees and had correspondingly more reduced QA. Net CO2 assimilation and the proportions of electrons used by alternative electron sinks such as the Mehler reaction and photorespiration were unaffected by N treatment regardless of canopy position. We conclude that the application of N fertilizer mainly affected the biochemistry and light-use physiology in lower- and mid-canopy needles by increasing the amount of chlorophyll and hence the amount of light harvested. This, however, did not improve photochemistry or safe dissipation, but increased PSII vulnerability to photoinactivation, an effect with likely significant consequences during sunflecks or sudden gap formation.     

Changes in soil N and P availability in a Pinus canariensis fire chronosequence

Fire induces changes in ecosystem nutrient regimes and can cause major losses of N and P. Much has been written about the effect of fire on nutrient availability in soil; most studies have been concerned with the short-term effects of shock. The primary objective of our study was to discover the effect of forest fires on long-term N and P availability, for which we used the ion exchange membrane method in a chronosequence of forest fires (1987, 1990, 1994, 1998, 2000 and 2005). The study was conducted on the island of La Palma (Canary Islands, Spain) in October 2006. We hypothesized that a rapid increase in nutrient availability would occur after the fire, followed by a reduction due to erosion and leaching, and then gradual recovery and an eventual return to initial levels. NH₄-N, NO₃-N and mineral-N availability peaked significantly 1 year after the fire. However, 5 years after the fire the N levels were similar to those found on unburned land. P availability decreased significantly a year after the fire, but gradually recovered over time. The N and P availability ratio increased significantly after the fire, falling during the chronosequence, with the lowest levels found on the unburned land. These results confirm that fire produces (a) a rapid and short-term increase in N availability, without a long-term decline, and (b) a long-term reduction in P availability, which tends to recover over time after the fire.     

Trophic polymorphism among Arctic charr Salvelinus alpinus L., from Loch Ericht, Scotland

Abstract— This article examines the morphology and ecology of Arctic charr Salvelinus alpinus in Loch Ericht, Scotland, Gill netting revealed that two forms of charr existed within the loch, a pale form and a colored form. Multivariate analysis of nine size-corrected morphometric measurements of the head region revealed that pale and colored charr differed significantly in the size and shape of the head characteristics and that both groups were easily discriminated on the basis of these characteristics. Stomach contents showed that the colored form fed predominantly on zooplankton and the pale form mainly consumed benthic macro-invertebrates, with larger pale individuals consuming other fish. On the basis of diet and morphology, the terms planktivorous and piscivorous were adopted for the two forms respectively. Length at age also distinguished the two groups, with piscivorous charr being smaller than colored charr up to age 8+ then surpassing the maximum length attained by planktivorous charr at ages of 9+ and above. The results are discussed in relation to other instances of sympatric morphs of Arctic charr.     

Habitat use of age 0 Alabama shad in the Pascagoula River drainage, USA

Mickle PF, Schaefer JF, Adams SB, Kreiser BR. Habitat use of age 0 Alabama shad in the Pascagoula River drainage, USA. Ecology of Freshwater Fish 2010: 19: 107–115. © 2009 John Wiley & Sons A/S
Abstract – Alabama shad ( Alosa alabamae ) is an anadromous species that spawns in Gulf of Mexico drainages and is a NOAA Fisheries Species of Concern. Habitat degradation and barriers to migration are considered contributing factors to range contraction that has left just the Pascagoula River drainage population in Mississippi. We studied juvenile life history and autecology in three rivers within the drainage. We collected fish, habitat and physicochemical data in three habitat types (sandbar, open channel and bank) from June to October 2004–2006. Sandbar habitat was favoured by smaller individuals early in the year. Catch per unit effort (CPUE) decreased through the summer as larger fish began occupying bank and open channel habitat. The most parsimonious model of abundance included year and river variables, while patterns of presence and absence were best explained by river, habitat type and physiochemical variables. While all three rivers in the drainage contained Alabama shad, fish were less abundant and had lower condition values in the Chickasawhay River. Earlier work suggested the Alabama shad may gradually move downstream towards the Gulf of Mexico in their first year. However, we found no evidence of this and captured large fish high in the drainage late in the year.     

Introgressive hybridization between native and non‐local steelhead (Oncorhynchus mykiss) of hatchery origin

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