Simple sequence repeats marker polymorphism in emmer wheat (<Emphasis Type="Italic">Triticum dicoccon</Emphasis> Schrank): Analysis of genetic diversity and differentiation

Genetic diversity was investigated in 73 accessions of emmer wheat (Triticum dicoccon Schrank) from 11 geographical regions using a set of 29 simple-sequence repeat (SSR or microsatellite) markers, representing at least two markers for each chromosome. The SSR primers amplified a total of 357 different alleles with an average of 12.31 alleles per locus. The number of fragments detected by each primer ranged between 6 (Xgwm1066) and 21 (Xgwm268). Null alleles were detected in nine of the 29 primers used. A high level of gene diversity index was observed. Across the 29 primers, gene diversity ranged from 0.60 (Xgwm46) to 0.94 (Xgwm655), with a mean of 0.82. There was a highly significant correlation (r=0.882; p<0.01) between gene diversity index and the number of loci, showing the number of loci per se is a strong indicator of diversity. Analysis of genetic diversity within and among eleven geographical regions revealed most of the genetic diversity of the total sample resided within regions. The coefficient of gene differentiation (Gst = 0.27) showed that the genetic variation within and among the 11 geographical regions was 73 and 27%, respectively. High value of mean number of alleles per locus was found in Iran (4.86) followed by Morocco (4.10) and Armenia (4.03). On the contrary, lower mean number of alleles per locus was detected in Yemen (2.83). The average gene diversity index across regions ranged from 0.52 (Slovakia) to 0.67 (Morocco) with an average of 0.60. Multivariate techniques of principal component analysis and clustering were employed to examine genetic relationship among the 73 emmer wheat accessions vis-à-vis geographical regions of collections. The genetic distance coefficients for all possible 55 pairs of regional comparisons ranged from 0.63 (between Iran and Armenia, Georgia and Azerbaijan, Georgia and Slovakia) to 0.97 (between Morocco and Yemen, Spain and Georgia, and Turkey and Iran) with a mean of 0.82. From the PCA results, a two dimensional plot of PC1 versus PC2 was constructed. The scatter plot of the first two principal components which explained altogether 27% of the total variation depicted the presence of a clear pattern of geographical differentiation except in few cases like accessions from Caucasian region. Similar pattern of genetic relationships among accessions was observed in cluster analysis. The study provided genetic information of emmer wheat in relation to geographical regions of origin. The information could be utilized in crop improvement, germplasm conservation programs, and in further investigation.     

Influence of land use in small karst watersheds on the chemical status of peloid sediments on the eastern Adriatic coast

Background, Aim and Scope  

Most of the cathment areas supplying water and mineral matter to the Adriatic bays with healing mud/peloids are affected by various degrees of human impact, i.e. activity that is introducing various types of contaminants to environment. The bays represent shallow marine depositional environments where organic-rich sediments accumulate. Investigations for balneological characterization of several localities along the Croatian coast have shown that these organic-rich sediments may be classified as healing mud, i.e. peloids. Healing mud due to its balneologic features is in treatment of various diseases and in improvement of the overall health conditions and general well-being. Various components of mud, particularly trace elements, could be absorbed through dermal contact. Therefore, the study of the abundance of such potentially toxic elements as As, Pb, Hg, Cd, Se, Sb, Cu, Zn in marine sediments used as healing mud is necessary in order to know their mobility and to avoid possible intoxications.     

Spatial and vertical distribution of <Superscript>137</Superscript>Cs in soils in the erosive area of southeastern Serbia (Pčinja and South Morava River Basins)

Purpose

The area of southeastern Serbia, the P?inja and South Morava River Basins, is under the influence of very strong erosion, and the aim of this study was to investigate the vertical and spatial distribution of the ¹³⁷Cs in the eroded soils of this area.

Materials and methods

Vertical soil profiles were collected with 5-cm increments from the uppermost layer down to 20, 25, 30, 40, and 50 cm of depth, depending on the thickness of the soil layers, i.e., down to the underlying parent rocks. Measurements of ¹³⁷Cs activity concentration were performed by using the HPGe gamma-ray spectrometer ORTEC-AMETEK (34 % relative efficiency and high resolution 1.65 keV at 1.33 MeV for ⁶⁰Co), from its gamma-ray line at 661.2 keV.

Results and discussion

The mean ¹³⁷Cs activity concentration across all 18 soil profiles (for all soil layers) was found to be 20 Bq kg^?1. In the greatest number of soil profiles, the ¹³⁷Cs activity concentration was generally highest in the first soil layer (0–5 cm) and decreased with soil depth, while in a few soil profiles, the peak of either the ¹³⁷Cs activity concentration occurred in the second soil layer (5–10 cm) or the ¹³⁷Cs activity concentration was almost equal throughout the entire soil profile. The mean ¹³⁷Cs activity concentration in the first soil layer (0–5 cm) was found to be 61 Bq kg^?1, and the high coefficient of variation of 92 % pointed out high spatial variability and large range of the ¹³⁷Cs activity concentrations in the study area.

Conclusions

The obtained results indicate that in the greatest number of soil profiles, ¹³⁷Cs is present in the upper layers, with concentration decreasing with depth, as is typical in uncultivated soil. Its spatial distribution was very uneven among the surface soil layers of the investigated sites. One of the main reasons for such pattern of ¹³⁷Cs in the study area may be soil erosion. Additional investigations which would support this hypothesis are required.

     

Clay amendment to sandy soil—effect of clay concentration and ped size on nutrient dynamics after residue addition

Purpose

Crop growth on sandy soils can be increased by claying. In modified sandy soils, the added clay is in the form of peds ranging in size from millimetres to centimetres creating a highly non-uniform matrix where ped size could influence nutrient availability and organic C binding. The aim of the study was to determine the effect of clay addition rate and ped size in residue amended sandy soil on soil respiration, nutrient availability and organic C retention.

Materials and methods

In this study, clay peds of 1, 2 or 3 mm size derived from a clay-rich Vertosol (73 % clay) were added to a sandy soil (3 % clay) at clay addition rates of 10 and 20 % w/w. After the addition of ground faba bean residue (C/N 37) at 10 g kg^?1, the soils were incubated for 45 days at 80 % of water-holding capacity.

Results and discussion

Clay addition had no consistent effect on cumulative respiration, but reduced NH₄ ⁺ availability with a greater reduction at 20 % compared to 10 % clay and with 1 and 2 mm compared to 3 mm peds. Sandy soil with clay peds had a greater maximum NH₄ ⁺ and P sorption capacity than sandy soil alone, and sorption capacity was higher at 20 % compared to 10 % clay addition and greater with 1 mm compared to 3 mm peds. Retrieval of clay peds at the end of the experiment showed ped breakdown during the experiment but also the formation of larger peds. Compared to the <53 μm fraction added at the start of the experiment, the total organic carbon (TOC) content of the <53 μm fraction was increased up to nearly two fold, particularly in the smaller peds (1 and 2 mm).

Conclusions

When sandy soils are amended with clay, N availability and organic C binding depend on both clay addition rate and ped size.

     

Amendment of sulfate with Se into soils further reduces methylmercury accumulation in rice

Purpose

Both selenium (Se) and sulfate could largely affect methylmercury (MeHg) dynamics and phytoavailability in soil-rice systems, while their combined effects are less understood. Here, we aimed at exploring the potential effects of sulfate on MeHg accumulation in rice in the presence of Se.

Materials and methods

Rice was cultivated in inorganic Hg-spiked soils amended with Se only (selenite/selenate, “Se treatments”) or Se and sulfate (“Se?+?Sulfate treatments”). Soil parameters (e.g., pH and redox potential (Eh)), MeHg concentrations in soils, as well as MeHg or Se accumulation in rice plants were quantified during the rice growth period.

Results and discussion

Soil MeHg concentrations were generally comparable between Se?+?Sulfate and Se treatments. However, MeHg uptake by rice plants in Se?+?Sulfate treatments was 9–31 % lower than those in Se treatments, possibly due to the increased soil pH and formation of iron sulfides, which may reduce MeHg phytoavailability under sulfate amendment. Furthermore, sulfate input enhanced Se accumulation in root (especially in the presence of selenate), which could be responsible for the increased MeHg distribution in root and thus lower MeHg distribution in grain. Consequently, the reduced plant uptake of MeHg together with the decreased MeHg distribution in grain resulted in decline of grain MeHg concentrations in Se?+?Sulfate treatments (8–31 % lower compared to Se treatments).

Conclusions

Our results suggest that sulfate input with Se could further reduce MeHg accumulation in rice, which improved mechanistic understanding of MeHg behaviors in soil-rice systems.

     

Cadmium contamination of sediments in the water reservoirs in Silesian Upland (southern Poland)

Purpose

Cadmium (Cd) is considered a toxic element and its concentrations are relevant to human health and the environment. Therefore, the purpose of the study was to determine the extent to which the bottom sediments of water bodies (artificial lakes and ponds) in the Silesian Upland in southern Poland are contaminated with Cd; an attempt was also made to determine the factors that condition spatial differences in the concentration of this element between individual water bodies in the region.

Materials and methods

Measurements of the Cd content in bottom sediments were carried out in 35 water bodies in southern Poland in 2011 and 2012. Depending on the surface area and morphometric characteristics, from two to nine samples representative in terms of sediment thickness were collected in each water body. Cadmium concentrations were determined for 92 0.25 g aliquots using the TD-ICP method.

Results and discussion

Cadmium content in all samples (0.7–580.0 mg kg^?1) was higher than the natural range of concentrations for this element in the Earth’s crust (0.1–0.3 mg kg^?1) and the geochemical background for Poland (0.5 mg kg^?1) and, with a few exceptions, was also higher than the preindustrial concentration (1.0 mg kg^?1) and the regional geochemical background (2.5 mg kg^?1). Adopting natural Cd concentrations in the Earth’s crust (0.1–0.3 mg kg^?1) as the baseline for the geoaccumulation index (I_geo), the sediments examined can be classified as extremely and heavily contaminated (and moderately contaminated in a small number of cases). The assessment of sediment quality based on I_geo, with the regional geochemical background (2.5 mg kg^?1) adopted as the baseline, results in non-contaminated and moderately contaminated sediments being dominant with a far smaller number of heavily and extremely contaminated ones.

Conclusions

In the case of several water bodies, Cd concentrations were at record levels that have not been found anywhere else in the world. On the basis of the I_geo, sediments of varying quality were found—from virtually uncontaminated to extremely contaminated. The I_geo index as an indicator of the quality of bottom sediments is a measure that requires careful interpretation, especially when different concentration levels regarded as natural are used for determining its value.

     

Regional Sediment Deficits in the Dutch Lowlands: Implications for Long-Term Land-Use Options (8 pp)

Background, Aim and Scope   Coastal and river plains are the surfaces of depositional systems, to which sediment input is a parameter of key-importance. Their habitation and economic development usually requires protection with dikes, quays, etc., which are effective in retaining floods but have the side effect of retarding sedimentation in their hinterlands. The flood-protected Dutch lowlands (so-called dike-ring areas) have been sediment-starved for up to about a millennium. In addition to this, peat decomposition and soil compaction, brought about by land drainage, have caused significant land subsidence. Sediment deficiency, defined as the combined effect of sediment-starvation and drainage-induced volume losses, has already been substantial in this area, and it is expected to become urgent in view of the forecasted effects of climate change (sea-level rise, intensified precipitation and run-off). We therefore explore this deficiency, compare it with natural (Holocene) and current human sediment inputs, and discuss it in terms of long-term land-use options. Materials and Methods: We use available 3D geological models to define natural sediment inputs to our study area. Recent progress in large-scale modelling of peat oxidation and compaction enables us to address volume loss associated with these processes. Human sediment inputs are based on published minerals statistics. All results are given as first-order approximations. Results: The current sediment deficit in the diked lowlands of the Netherlands is estimated at 136 ± 67 million m3/a. About 85% of this volume is the hypothetical amount of sediment required to keep up with sea-level rise, and 15% is the effect of land drainage (peat decomposition and compaction). The average Holocene sediment input to our study area (based on a total of 145 km3) is ~14 million m3/a, and the maximum (millennium-averaged) input ~26 million m3/a. Historical sediment deficiency has resulted in an unused sediment accommodation space of about 13.3 km3. Net human input of sediment material currently amounts to ~23 million m3/a. Discussion: As sedimentary processes in the Dutch lowlands have been retarded, the depositional system's natural resilience to sea-level rise is low, and all that is left to cope is human countermeasure. Preserving some sort of status quo with water management solutions may reach its limits in the foreseeable future. The most viable long-term solutions therefore seem a combination of allowing for more water in open country (anything from flood-buffer zones to open water) and raising lands that are to be built up (enabling their lasting protection). As to the latter, doubling or tripling the use of filling sand in a planned and sustained effort may resolve up to one half of the Dutch sediment deficiency problems in about a century. Conclusions: Conclusions, Recommendations and Perspectives. We conclude that sediment deficiency – past, present and future – challenges the sustainable habitation of the Dutch lowlands. In order to explore possible solutions, we recommend the development of long-term scenarios for the changing lowland physiography, that include the effects of Global Change, compensation measures, costs and benefits, and the implications for long-term land-use options. Recommendations and Perspectives: -     

Variation in primitive landraces of common bean (<Emphasis Type="Italic">Phaseolus vulgaris</Emphasis> L.) from Argentina

The phenotypic variation found in four common bean (Phaseolus vulgaris L.) complex primitive landraces, among a group of accessions collected in Northwestern Argentina in several missions is described, with particular attention to the wide diversity found in some small areas. It is presented a hypothesis about the maintenance of such diversity in bean mixtures or complex primitive landraces that grow close to their wild relative. Wide diversity regarding to seed type and plant characteristics was displayed by the landraces MCM-SV (composed of 11 lines), MCM-292 (14 lines), MCM-298 (5 lines) and VAV-3716 (14 lines). Food uses of dry seed and fresh pod seemed to be more relevant than the aesthetic use although all of them were presumably considered by humans for centuries resulting in the current phenotypes of these complex primitive landraces. Additionally, some weedy types (intermediate between wild and domesticated types) were detected in the landracesMCM-292 and MCM-298. The four complex landraces described consisted of highly diverse mixtures and they could play a role in breeding to enlarge the genetic basis of domesticated bean varieties belonging to the Andean gene pool.     

Effects of No. 2 fuel oil water-soluble-fractions on growth and reproduction in Neanthes arenaceodentata (Polychaeta: annelida)

Effects of water-soluble-fractions (WSFs) from No. 2 Fuel Oil on growth and reproduction in a laboratory strain of Neanthes arenaceodentata were studied in experiments simulating conditions of acute and chronic sublethal exposure. Effects were defined relative to concentrations of diaromatic hydrocarbons (naphthalenes) and total dissolved hydrocarbons. Hatching of metatrochophore larvae was inversely related to WSF concentration and to the length of time larvae were exposed prior to hatching. Growth of larvae into juveniles was unaffected by low concentrations. Inhibition of larval growth by higher WSF concentrations was reversible upon return of larvae to hydrocarbon-free sea water. Growth of juveniles into adult polychaetes was inversely related to concentration. Rate of development to the feeding juvenile stage was not affected by WSF in three successive generations of continuously exposed polychaetes. Oocyte maturation rates in the four WSF concentrations (2.5, 5, 10, 2507o) increased with each successive generation. All concentrations suppressed fecundity in each generation. Survival to the 32-segment juvenile stage (brood mortality) was inversely related to concentration in first generation animals. Brood mortality in all WSF concentrations decreased with successive generations thereafter. Levels of naphthalenes in worms declined with each generation. Naphthalenes concentrations in third generation animals was very similar to those of exposure media.     

Source of polynuclear aromatic hydrocarbons found in sediment in a region of expanding sugarcane cultivation of São Paulo State,Brazil

Purpose

Polycyclic aromatic hydrocarbons (PAHs) are unintentional products that are classified as persistent toxic substances. The goal of the present study was to generate data on the presence of 15 priority PAHs that are found in surface sediment and core sediment in the region of the Turvo/Grande watershed, São Paulo State, Brazil, which is an area of expanding sugarcane cultivation, and to correlate these data with the sources of these PAHs and the guiding values for sediment quality analysis.

Materials and methods

Surface sediments and sediment cores were sampled during the rainy and dry seasons in February and July 2010. The extraction of PAHs from sediments was performed using a Soxhlet extractor, and then the extract was cleaned according to the methods of the US EPA 3630C (US EPA 1996) using a silica gel column. Quantification was performed using high performance liquid chromatography with fluorescence detection.

Results and discussion

The concentrations of all 15 PAHs decreased as the depth of the sediment core increased. Overall, the concentrations decreased along the sediment core; however, the RTURARG (region predominantly used for planting sugarcane and livestock) during the rainy season and the CAPRP sampling site (located at part of the Preto River dam) during the dry season showed increased concentrations in the first few sediment fractions, and then the concentrations decreased. Higher concentrations were observed in urban locations, and the concentration of naphthalene was higher than the probable effect level (PEL) determined by the Canadian environmental agency. The obtained diagnostic ratios indicate that the sediment from areas with an abundance of sugarcane was a pyrolytic source of PAHs, which indicates a contribution from burning straw to the PAH concentrations in those areas.

Conclusions

For all sampling sites and all PAHs, we found a decreasing trend in PAH concentrations with increasing sediment core depth, and the locations, such as CAPRP, that experienced a higher level of human activity had the highest total concentrations of PAHs. These locations were the only areas in which the PAH naphthalene was found in higher concentrations than the PEL. The diagnostic ratios reveal that regions with sugarcane plantations had predominantly pyrolytic sources of PAHs, indicating the contribution of PAHs from sugarcane straw burning.