The ecoresponsive genome of Daphnia pulex

We describe the draft genome of the microcrustacean Daphnia pulex, which is only 200 megabases and contains at least 30,907 genes. The high gene count is a consequence of an elevated rate of gene duplication resulting in tandem gene clusters. More than a third of Daphnia's genes have no detectable homologs in any other available proteome, and the most amplified gene families are specific to the Daphnia lineage. The coexpansion of gene families interacting within metabolic pathways suggests that the maintenance of duplicated genes is not random, and the analysis of gene expression under different environmental conditions reveals that numerous paralogs acquire divergent expression patterns soon after duplication. Daphnia-specific genes, including many additional loci within sequenced regions that are otherwise devoid of annotations, are the most responsive genes to ecological challenges.     

Diurnal migration and responses to simulated rainfall in desert soil microarthropods and nematodes

Diurnal patterns of microarthropod abundance in surface leaf litter were related to its moisture content. Leaf litter moisture was nearly 7% by weight at 0800h but fell to less than 1% by mid-day. Oribatid and tydeid mites moved into litter in the early morning and back into the soil before mid-day. There were no significant differences in numbers of nematodes in litter or soil and 78–98% of the nematodes were anhydrobiotic (coiled) in soil and litter at all times sampled.Following simulated rainfall there were fewer microarthropods in litter at mid-day in the absence of marked decreases in soil and litter moisture content. During drying, there were gradual reductions in numbers and species diversity of litter microarthropods. Nematode numbers did not change as litter dried. Anhydrobiotic nematodes in the soil increased from 14% on day 1 to 85% on day 4. Between 24 and 36 h after simulated rainfall, the proportion of anhydrobiotic litter nematodes increased from 35 to 80%,.Within 1 h after simulated rainfall, there were marked increases in numbers and diversity of microarthropods in surface litter. No collembolans were extracted from dry litter controls but the wet litter was dominated by isotomid, sminthurid and onychiurid collembolans. There were increases in numbers and diversity of oribatid, tydeid and gamasid mites in the wet surface litter within l h after wetting compared to controls.     

Predicting the distributions of plant species at the regional scale: a hierarchical matrix model

This paper describes a model which links four levels in an ecological hierarchy using a series of matrices. The four levels are landscape, land cover type, community and species. Each matrix quantifies the probabilistic associations between entities in two adjacent levels in the hierarchy. A landscape classification (1 km resolution) provides a spatial element to the model enabling the distributions of species to be predicted and presented as maps within a geographical information system (GIS). Implementation of the model in Northern England is described. The distributions of 579 species of plants were predicted and compared with data from independent field surveys. The predicted distributions were found to be accurate for 59 % of species. The distributions of rare and non-native (introduced) species of plant were relatively poorly predicted. The potential of this approach to model plant species distributions is discussed.     

Voluntary Spawning of Captive Nassau Groupers Epinephelus striatus in a Concrete Raceway

Nassau groupers Epinephelus striatus held in a 37-m³ concrete raceway were conditioned to spawn 3 mo later than in their home waters. After being held in the raceway for 15 mo, four female and two male groupers spawned voluntarily over a 4-d period in March 1994, producing 10.3 million eggs. By December 1994, two females had been removed. During March 1995, one of the remaining two females spawned on three consecutive days (60 cm TL, 1,172,000 eggs) and the other only on the third day (47 cm TL, 488,000 eggs). In April 1995, three females (including one held in isolation for 6 mo, then replaced 6 d before the first spawn) produced more than 9.8 million eggs in 4 d. The isolated female spawned 8 d after being placed in a cage in the raceway and 4 d after release in the raceway.
Individual females spawned as many as nine times a day for 1–4 d. Spawning occurred from 3.5 d before until 8.5 d after the full moon. A 30-d interval elapsed between March and April 1995 spawning periods. Fertilization was in the range 83–100% and hatching 90–100%. Spawns occurred in a temperature range of 23.1–27.9 C; however, based on spawning frequency and volume and on egg development, 24–27 C seems most suitable. These results and other evidence support the view that Nassau groupers can be conditioned to spawn any month of the year, mainly by manipulating temperature.     

Effects of photoperiod on growth, carcass composition, prolactin, growth hormone and cortisol in prepubertal and postpubertal Holstein heifers

Effects of photoperiod on growth, carcass composition and serum concentrations of prolactin, growth hormone and cortisol were determined in prepubertal and postpubertal Holstein heifers. Forty-two prepubertal (avg body wt 84 +/- 3.0 kg) and 42 postpubertal (avg body wt 303 +/- 7.1 kg) Holstein heifers were utilized. Ten prepubertal and 10 postpubertal heifers were slaughtered before treatment began to obtain initial carcass data. The remaining 32 prepubertal and 32 postpubertal heifers were paired by body weight and randomly assigned to short-day (8 h of light: 16 h of dark) or long-day (16 h of light: 8 h of dark) photoperiods. After exposure to treatments for an average of 139 d, 10 prepubertal and 10 postpubertal heifers from each photoperiod treatment were slaughtered. In prepubertal heifers, photoperiod did not affect (P greater than .10) average daily body weight gain, carcass weight, carcass composition, accretion of carcass fat and carcass protein, or serum concentrations of prolactin, growth hormone or cortisol. However, prepubertal heifers exposed to long-day photoperiods had reduced (P less than .01) urinary N tau-methylhistidine excretion compared with heifers given short-day photoperiods. Postpubertal heifers exposed to short-day photoperiods had greater average body weight daily gain than animals exposed to long-day photoperiods. Although there was no effect of photoperiod (P greater than .10) on carcass or fat depot weights, postpubertal heifers exposed to short days had greater (P = .06) percentages of fat and reduced (P = .07) percentages of protein in the soft tissue of the 9-10-11 rib sections. Fat accretion was greater (P less than .05) in carcasses of postpubertal heifers exposed to short days than heifers given long-day photoperiods, but there was no effect (P greater than .10) of photoperiod on protein accretion. Photoperiod did not affect serum concentrations of growth hormone and cortisol, but serum prolactin tended (P less than .10) to be greater in postpubertal heifers exposed to long days. Under the conditions of this experiment, we conclude that exposure to short-day photoperiods stimulated body weight gain and fat accretion in postpubertal but not prepubertal Holstein heifers.     

Effects of intermittent injections of LHRH on specific binding of 125I-labeled gonadotropins to granulosa and theca, and concentrations of steroids in serum and ovarian follicles during postpartum anovulation in suckled beef cows

To examine ovarian follicular response to low-dose injections of luteinizing hormone-releasing hormone (LHRH), 32 anovulatory, suckled beef cows were allotted to one of four treatment groups and injected with either saline or 500 ng LHRH every 2 h for 48 or 96 h, starting 21.4 +/- .4 d after parturition. Two hours after the last injection of LHRH, cows were ovariectomized and 10 to 15 ovarian follicles per pair of ovaries were removed and categorized by diameter as small (1.0 to 3.9 mm), medium (4.0 to 7.9 mm) or large (greater than or equal to 8.0 mm). Injections of LHRH did not affect (P greater than .10) steroid levels in small follicles or numbers of gonadotropin receptors in small and medium follicles. Concentrations of progesterone in fluid of medium follicles increased 1.5-fold (P less than .05) after 96 h of LHRH, whereas concentrations of estradiol and androstenedione were unchanged. In fluid of large follicles, concentrations of progesterone were fourfold greater (P less than .05) in LHRH-treated than in control cows at 48 h, but by 96 h progesterone was twofold greater (P less than .05) in control than LHRH-treated cows. In large follicles, concentrations of estradiol were unchanged (P greater than .10) after 48 h of LHRH injections but after 96 h estradiol was twofold greater (P less than .05) in LHRH-treated than control cows. Increased concentrations of estradiol in large follicles coincided with increased numbers of binding sites for human chorionic gonadotropin (hCG) but not follicle stimulating hormone (FSH) in granulosa and theca.(ABSTRACT TRUNCATED AT 250 WORDS)     

A survey of pesticide usage against leatherjackets (Tipula species) in south-west scotland in 1975

A survey of 2000 farms in south-west Scotland revealed that 3.5% of the cereal area had been treated with pesticides for the control of leatherjackets (Tipula spp.) in 1975. A small area of recently established grass and some turnip fields were also treated. DDT and gamma-HCH were the most commonly used compounds with an estimated use respectively of 1863 and 376 kg of active ingredient. Pesticide usage in 1975 appeared to have been consistent with the generally low leatherjacket population in that year.