Full-genome characterization and genetic analysis of a H9N2 virus in commercial broilers in Iran, 2017

Tropical Animal Health and Production - Since 1998, Iran’s poultry industry has faced several outbreaks of low pathogenic avian influenza H9N2. Tissue samples were collected from a broiler...     

Potential of willow and its genetically engineered associated bacteria to remediate mixed Cd and toluene contamination

Purpose

The purpose of this study was to investigate if bacteria with beneficial properties that were isolated from willow growing on a metal-contaminated site can be further equipped with genes coding for a specific degradation pathway to finally obtain transconjugants that can be inoculated in willow to improve phytoremediation efficiency of mixed contaminations.

Materials and methods

Cultivable rhizosphere bacteria and root endophytes were isolated from willow (cv. Tora) growing on a metal-contaminated soil. All isolated strains were tested for their metal resistance and potential to promote plant growth. The two most promising strains were selected and were equipped with the pTOM plasmid coding for toluene degradation. Both transconjugants were inoculated separately and combined in willow cuttings exposed to mixed Cd–toluene contamination, and their effect on phytotoxicity, Cd uptake, and toluene evapotranspiration was evaluated.

Results and discussion

Many of the isolated strains tested positive for the production of siderophores, organic acids, and indole acetic acid (IAA) and showed increased Cd resistance. The Cd-resistant, siderophore-producing rhizosphere strain Burkholderia sp. HU001 and the Cd-resistant root endophyte Pseudomonas sp. HU002, able to produce siderophores, organic acids, and IAA, were selected as receptors for conjugation with the toluene-degrading Burkholderia vietnamiensis BU61 as a donor of the pTOM-TCE plasmid. Although inoculation with the individual transconjugant strains had no effect on plant growth and negatively affected Cd uptake, their combined inoculation resulted in an increased shoot biomass upon Cd–toluene exposure did not affect Cd uptake and strongly reduced evapotranspiration of toluene to the atmosphere.

Conclusions

In this study, inoculation of willow with a consortium of plant-associated bacteria equipped with the appropriate characteristics resulted in an improved phytoremediation of a mixed Cd–toluene contamination: the degradation of toluene was improved leading to a decreased toxicity and evapotranspiration, while Cd uptake and translocation were not affected.     

Potassium release from sand,silt and clay fractions in calcareous soils of southern Iran

The release of non-exchangeable potassium from 24 calcareous soils of divergent mineralogy, from southern Iran, was examined. Sand, silt and clay particles were fractionated after dispersion with an ultrasonic probe. Samples were extracted with 0.01 M CaCl₂ for 30 successive 2-h periods. The clay fraction released the largest amount of K in each soil. Cumulative K released ranged from 175 to 723, 35 to 128, and 71 to 146 mg kg^?1 contributing 20–90, 4–39 and 2–54% for clay, silt and sand fractions, respectively. The lower proportion of K released from sand and silt fractions can be explained by the presence of a high content of CaCO₃ and quartz in these fractions. The release kinetics for the non-exchangeable K data showed that parabolic diffusion and power function were the best fitting kinetic models. This indicated that slow diffusion of K from the mica interlayer positions is the main rate-controlling process. Cumulative K released and constant b values of parabolic diffusion model correlated significantly with the mica content of the clay fraction.     

Novel cationic softener containing MCT reactive dyes for cotton: Simultaneous dyeing and functional finishing

The cationic softeners containing MCT (monochloro-s-triazinyl) reactive dyes were employed on the dyeing of cotton fabrics. The substantivity, exhaustion, and fixation of the dyes were investigated. It was found that these functional dyes could be effectively introduced to cotton fibers to achieve simultaneous coloration and functional finishing effects. All the dyed fabrics exhibited softening efficacy. The dyes offered excellent washing fastness on cotton substrate. Light fastnesses of the dyes on the substrate were poor.     

A PCR-based assay for differentiating A- and A*-type strains of Xanthomonas citri subsp. citri, the causal agent of Asiatic citrus canker

By applying A- and A*-type strains of Xanthomonas citri subsp. citri (Xcc) in a repetitive sequence-based polymerase chain reaction (rep-PCR), two DNA amplicons, one unique to each strain, were evaluated as a probe against the DNA of Xcc strains. Two pairs of primers derived from these amplicons were tested in a PCR analysis. The results confirmed that primers Ms⁺/Ms^? are useful for differentiating A-type from A*-type strains of Xcc. Also, a multiplex PCR with both set of primers can be used to distinguish three groups in Xcc populations: A-type strains and two subgroups of A* strains including Iranian and Thai A* strains.     

Effect of β-aminobutyric acid on resistance of tomato against Pectobacterium carotovorum subsp. carotovorum

Journal of Plant Diseases and Protection - Stem rot of tomato caused by Pectobacterium carotovorum subsp. carotovorum (Pcc) results in economic yield loss worldwide. Previous studies have...     

Protection of neonatal broiler chicks against Salmonella Typhimurium septicemia by DNA containing CpG motifs

Oligodeoxynucleotides (ODN) containing cytosine-phosphodiester-guanine (CpG-ODN) motifs have been shown to stimulate the innate immune system against a variety of bacterial and protozoan infections in a variety of vertebrate species. The objective of this study was to investigate the immunostimulatory effect of CpG-ODN in neonatal broilers against Salmonella Typhimurium septicemia. Day-old broiler chicks, or embryonated eggs that had been incubated for 18 days, received 50 microg of CpG-ODN, 50 microg of non-CpG-ODN, or saline. Four days after exposure to CpG-ODN or day 2 posthatch, 1 x 10(6) or 1 x 10(7) colony-forming units (cfu) of a virulent isolate of Salmonella Typhimurium was inoculated by the subcutaneous route in the neck. Clinical signs, pathology, bacterial isolations from the air sacs, and mortality were observed for 10 days following challenge with Salmonella Typhimurium. The survival rate of birds in groups receiving either non-CpG-ODN or saline following Salmonella Typhimurium infection was 40%-45%. In contrast, birds receiving CpG-ODN had significantly higher survival rate of 80%-85% (P < 0.0001). Bacterial loads and pathology were low in groups treated with CpG-ODN compared to the groups receiving saline or non-CpG-ODN. Colony-forming units of Salmonella Typhimurium in the peripheral blood were significantly lower in birds treated with CpG-ODN compared to the group that received saline. This is the first time that CpG-ODN has been demonstrated to have an immunoprotective effect against an intracellular bacterial infection in neonatal broiler chickens following in ovo delivery.     

Monitoring the occurrence of tomato bacterial spot and range of the causal agent Xanthomonas perforans in Iran

A 2‐year comprehensive field survey was conducted across major tomato‐growing areas of Iran. Two hundred and thirty‐four tomato fields and six tomato‐producing greenhouses were surveyed for the potential presence of bacterial spot disease. Five hundred and ninety‐six tomato samples with and without symptoms were analysed. While Xanthomonas spp. were found in association with tomato plants both with and without symptoms from five surveyed counties, the bacterial spot disease was observed only in plants from three of them. Only strains isolated from plants with symptoms induced disease symptoms on tomato, while those isolated from symptomless plants caused symptoms only on cabbage and common bean. None of the isolates caused disease symptoms on pepper and eggplant. Phylogenetic analysis showed that X. perforans is the causal agent of tomato bacterial spot in Iran, although X. campestris and X. axonopodis were also associated with symptomless tomato plants. All X. perforans isolates in this study were sensitive to streptomycin, copper sulphate and copper oxychloride at concentrations of 50 mg L^?1, 200 mg L^?1 and 0.8 g L^?1, respectively. Unlike the type strain of X. perforans, isolates in this study did not produce bacteriocin against other Xanthomonas spp., nor were they detected using the usual species‐specific primer pair Bs‐XpF/Bs‐XpR. This suggests an atypical nature of X. perforans strains in Iran, which leads to the hypothesis that X. perforans strains in Iran may have a separate origin to those causing disease epidemics elsewhere. The aggregated dispersal pattern of the diseased tomato fields signifies the seedborne introduction of the pathogen into the country.     

Effects of municipal wastewater on soil chemical properties in cultivating turfgrass using subsurface drip irrigation

Knowing the concentrations of the nutrient elements in soils is important due to their toxic effect on humans and the environment. The aims of this study were to assess the effects of water quality, depths, and distances of lateral installation on soil chemical properties during turfgrass cultivation. A field experiment was conducted using a Split-Split-Plot design based on the randomized complete block (RCB) design with two treatments (well water and wastewater) and eight sub-treatments (45 and 60 cm distance of the laterals and 15, 20, 25, and 30 cm depths of laterals) in three replicates on a sandy loam soil, in Shahrekord, Iran. Soil samples were collected from 0 to 30 and 30 to 60 cm depth for measuring nitrate (NO₃^?), electrical conductivity (EC), and pH at the end of the experiment. During the experiment, fecal coliform was also measured at the soil surface. Results indicated that by increasing lateral distance, NO₃^? level increased in both layers. With installing laterals in deeper levels, NO₃^? concentration decreased at the beginning, then increased in the first layer, whereas in the second layer, NO₃^? concentration decreased. In addition, installing laterals in deeper depth caused an increase in soil EC in the top layer, but a decrease in the lower layer. However, the results showed that there was no significant effect of the treatments (well water and wastewater) and the sub-treatments (distance and depths of laterals) on soil pH. The results also show that with increasing laterals depth, fecal coliform level decreased at the soil surface.